Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 125 6e-24 seq8 116 3e-21 seq6 113 4e-20 seq3 100 2e-16 seq9 98.7 9e-16 seq5 93.3 4e-14 seq1007 91.5 1e-13 seq11 89.7 4e-13 >seq10 Length=33665772 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| | |||||| | ||||| || ||||||| | ||||| || || || Sbjct 14516247 ATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTCC 14516188 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || |||| || |||| ||| || ||||| || |||||||| ||||| Sbjct 14516187 GATACTATTGATAATGTGAAAGCTAAAATTCAA-GATAAAGAGGGTATTCCACCGGACCA 14516129 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| || ||||||||||| |||| |||||| | | || ||||| Sbjct 14516128 GCAAAGGTTAATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTTGCGGACTACAA 14516069 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || | ||||| Sbjct 14516068 TATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 14516036 >seq8 Length=35439739 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| ||| Sbjct 1222286 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCT 1222227 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| ||||| || || |||||||| ||||| Sbjct 1222226 GACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 1222167 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||| ||||| || | || || | |||||| ||| |||||||||| Sbjct 1222166 CAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATTACAAT 1222107 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || | ||||| Sbjct 1222106 ATTCAGAAGGAGTCCACTCTTCACCTGGTGCT 1222075 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | ||||| || ||||||| |||| || ||| || Sbjct 1222514 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1222455 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1222395 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| ||||| ||| ||| || || Sbjct 1222394 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 1222335 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| || ||| | ||||| || || || ||||| Sbjct 1222334 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 1222288 >seq6 Length=34899179 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 25024 CCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAA 25083 ||||||| ||||||| | || || ||| || ||||||||||| ||||| || Sbjct 13154341 CCGGTAAGACCATCACCCTTGAGGTTGAGAGCTCGGACACTATCGACAATGTGAAGGCAA 13154400 Query 25084 AAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAAC 25143 | || ||||| || || ||||| || ||||| ||| || | || ||||| ||||| | Sbjct 13154401 AGATACAGGACAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATCTTTGCTGGCAAGC 13154460 Query 25144 AATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATT 25203 |||| || |||| ||||| ||| || || ||||| || || ||||| || || || | Sbjct 13154461 AATTGGAGGATGGCCGCACCTTGGCTGACTATAATATCCAGAAGGAATCTACCCTCCACT 13154520 Query 25204 TAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| ||||| || ||||| Sbjct 13154521 TGGTGCTGAGGCTCAGGGGAGG 13154542 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || || ||||||| | || || ||| || Sbjct 13154544 ATGCAAATTTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 13154603 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| ||| || ||||| || || || ||||| |||||| Sbjct 13154604 GACACTATCGACAATGTGAAGGCAAAGATACAGGACAAGGAGGGAATCCCACCAGACCAA 13154663 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | || |||| ||||| ||| || || || Sbjct 13154664 CAGAGGCTAATCTTTGCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAAC 13154723 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || |||||||| || || Sbjct 13154724 ATCCAGAAGGAATCCACTCTTCA 13154746 >seq3 Length=30470407 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || | ||||| |||| ||||||||||| Sbjct 5991201 ATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCGTCG 5991142 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| || || || || || || |||||||| Sbjct 5991141 GACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCAG 5991082 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||| || || | || |||| ||||| | | || |||||| Sbjct 5991081 CAGCGCCTCATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGCACCCTCGCGGACTACAAT 5991022 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 5991021 ATCCAGAAGGAGTCCACCCTCCA 5990999 >seq9 Length=34148863 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || |||| || | || |||||| || Sbjct 33541209 ATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTCG 33541268 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || ||||||||||| || || Sbjct 33541269 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33541328 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || || || || |||| || | ||||| ||| |||||||| Sbjct 33541329 CAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGCACCCTGGCAGATTACAAC 33541388 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || | ||||| Sbjct 33541389 ATTCAGAAGGAATCCACCCTTCACCTGGTGCT 33541420 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || |||||| || Sbjct 33549195 ATGCAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTCG 33549136 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| ||||| || ||||||||||| || || Sbjct 33549135 GACACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33549076 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || || || | || || | ||||| ||| |||||||| Sbjct 33549075 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAAC 33549016 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || |||||||| || || | ||||| Sbjct 33549015 ATTCAGAAGGAATCCACCCTTCACCTGGTGCT 33548984 >seq5 Length=29377369 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || | ||||| | ||||| ||| ||| ||| |||| || ||| || Sbjct 457525 ATGCAAATCTTCATCAAGACCCTTACCGGCAAAACCACCACCCTCGAGGTCGAGAGCTCG 457584 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||| || || ||||| || || || || ||||| Sbjct 457585 GACACCATCGAGAATGTGAAGGCTAAGATGCAAGACAAGGAGGGTATCCCTGTGGACCAG 457644 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || ||||||||||| ||||| ||||||| ||||| | | ||||||| Sbjct 457645 CAAAGGCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTAGCCGATTACTCC 457704 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || ||||| || || ||||| || Sbjct 457705 ATCCACAAGGAATCTACCCTTCATTTGGT 457733 >seq1007 Length=1704909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 ||||| ||||| || || || ||||| | ||||| || | || || |||| ||||| Sbjct 32534 CGGAAAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATTACCCTCGAGGTGGA 32475 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| || ||| | ||||| | ||| || ||| ||||| ||||||||||| | Sbjct 32474 GTCATCGGACGCCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCA 32415 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| |||||| | || || ||||| || || | || || | ||||| | | ||| Sbjct 32414 GGACCAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGA 32355 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||| || || || || ||||| || || Sbjct 32354 CTACAACATCCAGAAGGAGTCCACCCTCCA 32325 >seq11 Length=25514024 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || | ||||| | || ||||||||||| Sbjct 15140937 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCG 15140878 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 15140877 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 15140818 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || || | ||||| | | ||| || || Sbjct 15140817 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 15140758 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 15140757 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCT 15140726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433289663878085