Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 125 6e-24
seq8 116 3e-21
seq6 113 4e-20
seq3 100 2e-16
seq9 98.7 9e-16
seq5 93.3 4e-14
seq1007 91.5 1e-13
seq11 89.7 4e-13
>seq10
Length=33665772
Score = 125 bits (138), Expect = 6e-24
Identities = 157/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||||||||| | |||||| | ||||| || ||||||| | ||||| || || ||
Sbjct 14516247 ATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTCC 14516188
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| ||||| || |||| || |||| ||| || ||||| || |||||||| |||||
Sbjct 14516187 GATACTATTGATAATGTGAAAGCTAAAATTCAA-GATAAAGAGGGTATTCCACCGGACCA 14516129
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | || ||||| || ||||||||||| |||| |||||| | | || |||||
Sbjct 14516128 GCAAAGGTTAATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTTGCGGACTACAA 14516069
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||| || || || ||||| || || | |||||
Sbjct 14516068 TATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 14516036
>seq8
Length=35439739
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || ||| |||
Sbjct 1222286 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCT 1222227
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| ||| ||| ||||| || || |||||||| |||||
Sbjct 1222226 GACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 1222167
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || |||| ||||| ||||| || | || || | |||||| ||| ||||||||||
Sbjct 1222166 CAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATTACAAT 1222107
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || ||||| || || | |||||
Sbjct 1222106 ATTCAGAAGGAGTCCACTCTTCACCTGGTGCT 1222075
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | ||||| || ||||||| |||| || ||| ||
Sbjct 1222514 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1222455
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || || || || || |||||
Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1222395
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | || |||| ||||| ||| ||| || ||
Sbjct 1222394 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 1222335
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| || || ||||| || ||| | ||||| || || || |||||
Sbjct 1222334 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGG 1222288
>seq6
Length=34899179
Score = 113 bits (124), Expect = 4e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 25024 CCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAA 25083
||||||| ||||||| | || || ||| || ||||||||||| ||||| ||
Sbjct 13154341 CCGGTAAGACCATCACCCTTGAGGTTGAGAGCTCGGACACTATCGACAATGTGAAGGCAA 13154400
Query 25084 AAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAAC 25143
| || ||||| || || ||||| || ||||| ||| || | || ||||| ||||| |
Sbjct 13154401 AGATACAGGACAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATCTTTGCTGGCAAGC 13154460
Query 25144 AATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATT 25203
|||| || |||| ||||| ||| || || ||||| || || ||||| || || || |
Sbjct 13154461 AATTGGAGGATGGCCGCACCTTGGCTGACTATAATATCCAGAAGGAATCTACCCTCCACT 13154520
Query 25204 TAGTGCTAAGGCTAAGAGGAGG 25225
| ||||| ||||| || |||||
Sbjct 13154521 TGGTGCTGAGGCTCAGGGGAGG 13154542
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| || || | || || || ||||||| | || || ||| ||
Sbjct 13154544 ATGCAAATTTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 13154603
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||||||||| ||||| ||| || ||||| || || || ||||| ||||||
Sbjct 13154604 GACACTATCGACAATGTGAAGGCAAAGATACAGGACAAGGAGGGAATCCCACCAGACCAA 13154663
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || || || | || |||| ||||| ||| || || ||
Sbjct 13154664 CAGAGGCTAATCTTTGCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAAC 13154723
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || |||||||| || ||
Sbjct 13154724 ATCCAGAAGGAATCCACTCTTCA 13154746
>seq3
Length=30470407
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | || || || | ||||| |||| |||||||||||
Sbjct 5991201 ATGCAGATCTTCGTGAAGACTCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCGTCG 5991142
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || ||| || || || || || || ||||||||
Sbjct 5991141 GACACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCAG 5991082
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || |||||||| || || | || |||| ||||| | | || ||||||
Sbjct 5991081 CAGCGCCTCATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGCACCCTCGCGGACTACAAT 5991022
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || ||||| || ||
Sbjct 5991021 ATCCAGAAGGAGTCCACCCTCCA 5990999
>seq9
Length=34148863
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | ||||| || |||| || | || |||||| ||
Sbjct 33541209 ATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTCG 33541268
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| || ||| ||||| || ||||||||||| || ||
Sbjct 33541269 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33541328
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || || || || |||| || | ||||| ||| ||||||||
Sbjct 33541329 CAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGCACCCTGGCAGATTACAAC 33541388
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || |||||||| || || | |||||
Sbjct 33541389 ATTCAGAAGGAATCCACCCTTCACCTGGTGCT 33541420
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || |||| || | || |||||| ||
Sbjct 33549195 ATGCAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTCG 33549136
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| ||| ||| ||||| || ||||||||||| || ||
Sbjct 33549135 GACACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33549076
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| || || || | || || | ||||| ||| ||||||||
Sbjct 33549075 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAAC 33549016
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || |||||||| || || | |||||
Sbjct 33549015 ATTCAGAAGGAATCCACCCTTCACCTGGTGCT 33548984
>seq5
Length=29377369
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || | ||||| | ||||| ||| ||| ||| |||| || ||| ||
Sbjct 457525 ATGCAAATCTTCATCAAGACCCTTACCGGCAAAACCACCACCCTCGAGGTCGAGAGCTCG 457584
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| |||||| ||||| || || ||||| || || || || |||||
Sbjct 457585 GACACCATCGAGAATGTGAAGGCTAAGATGCAAGACAAGGAGGGTATCCCTGTGGACCAG 457644
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|| || | || ||||||||||| ||||| ||||||| ||||| | | |||||||
Sbjct 457645 CAAAGGCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTAGCCGATTACTCC 457704
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGT 25207
|| || || ||||| || || ||||| ||
Sbjct 457705 ATCCACAAGGAATCTACCCTTCATTTGGT 457733
>seq1007
Length=1704909
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051
||||| ||||| || || || ||||| | ||||| || | || || |||| |||||
Sbjct 32534 CGGAAAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATTACCCTCGAGGTGGA 32475
Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111
||| || ||| | ||||| | ||| || ||| ||||| ||||||||||| |
Sbjct 32474 GTCATCGGACGCCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCTCA 32415
Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171
||||| |||||| | || || ||||| || || | || || | ||||| | | |||
Sbjct 32414 GGACCAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTCGCCGA 32355
Query 25172 TTACAATATTCAAAAAGAATCCACGCTACA 25201
||||| || || || || ||||| || ||
Sbjct 32354 CTACAACATCCAGAAGGAGTCCACCCTCCA 32325
>seq11
Length=25514024
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || | ||||| | || |||||||||||
Sbjct 15140937 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCG 15140878
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || ||| ||||| || || || || || |||||
Sbjct 15140877 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 15140818
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || ||||| || || | || || | ||||| | | ||| || ||
Sbjct 15140817 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 15140758
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || | |||||
Sbjct 15140757 ATCCAGAAGGAGTCTACCCTCCACCTGGTGCT 15140726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433289663878085
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