Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq1382 163 3e-35 seq1035 149 7e-31 seq4 134 2e-26 seq9 131 2e-25 seq1024 105 8e-18 seq1063 93.3 5e-14 seq10 84.2 2e-11 >seq1382 Length=172696 Score = 163 bits (180), Expect = 3e-35 Identities = 247/343 (72%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 166573 CACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCA--GGTGTATTCGGTGGGT 166630 ||||||||||| ||||| || || | ||| | ||| |||| ||||||||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 166631 CACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACT 166689 | || ||| || ||||| || | || || || | | | | || | || |||||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615 Query 166690 GAAACTGAGTCT-CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAG----AGACCTACA 166744 |||| || ||| || | | ||||||| || ||||||||||||| |||| |||| Sbjct 123616 GAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACA 123674 Query 166745 ACA-----TCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 | | | || |||||||||||||| || | || ||||| ||||||| ||| || Sbjct 123675 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTT 123734 Query 166800 CAACAACTCTCGCTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATCT 166855 |||||||||||||| || || | ||| | ||||| ||||| ||| | ||||||| Sbjct 123735 CAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 166856 GGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 166898 || | || ||| | ||| ||||||||||||| ||||||||||| Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1035 Length=594915 Score = 149 bits (164), Expect = 7e-31 Identities = 276/400 (69%), Gaps = 34/400 (9%) Strand=Plus/Plus Query 167774 TTTGGTGTTGCAGCGATATTTAGAT---TCCTACTATTCCTACAGGGTTTCCATAACTGG 167830 |||||||| ||||| |||||| ||| |||| ||||| || | | |||| ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGG 237052 Query 167831 ACGCTCAACCCTTTCCATATGATGGGAGTTGCTG-GTATCCTAGGCGGTGCATTGCTTTC 167889 ||| | |||||||| |||||||||||||| | |||| |||||| ||| |||| | Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAGTAT--TAGGCGCTGCTCTGCTATG 237110 Query 167890 TGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGA----GCAAGCAA 167945 || || |||||| | ||| | || ||| | | ||||||||| | |||| | Sbjct 237111 CGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATAC 237166 Query 167946 ACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTA 168005 | ||| | || ||| | | ||||| | || || |||||||| ||||||||||||| Sbjct 237167 ATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTA 237226 Query 168006 ACCGATTCTGGTCTCAAAT-----TTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCA 168060 |||| || ||||| ||||| ||| || ||||||| |||||| |||||| Sbjct 237227 ACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG----- 237281 Query 168061 CTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATT--GGTATCA-- 168116 | ||||| |||| || | || | || | |||| ||| ||||| |||| | Sbjct 237282 ---CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAG 237338 Query 168117 TCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTC 168156 ||||||| || || ||||| ||||| |||||||| || || Sbjct 237339 TCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378 >seq4 Length=30051516 Score = 134 bits (148), Expect = 2e-26 Identities = 132/169 (78%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 166869 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGA 166928 |||| ||||||||||||| |||||||| || |||||||| |||||||| ||| | | || Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 166929 TGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGT-- 166986 ||||||||||||| | || || ||| ||| || |||| |||||| ||| ||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 166987 --ATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCT 167033 ||||||||||| || || ||||||||||| ||||||||| | || || Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq9 Length=34148863 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 166414 CTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 166473 || |||||||||||||||||| || ||||| || || ||||||||||| || | || Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009 Query 166474 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATC 166533 || ||| || |||| ||| | |||||||| ||||||||| | ||||| | || || Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069 Query 166534 AGTGGCACCTTCAACTACATG-CTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCC 166592 | ||| ||||||| |||| |||| || | ||||| ||||||||||| ||||| | Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128 Query 166593 CTTCCATATGCTGGGTGTAGCAGGTGTATTC 166623 | || ||| | |||||| | ||||||||| Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1024 Length=717246 Score = 105 bits (116), Expect = 8e-18 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 166948 AACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGT 167007 ||||||||||| ||| || ||||||||||| || ||||||||||||||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 167008 AATGCTCACAACTTCCCTCTGGATCT 167033 |||||||||||||||||||| || || Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq1063 Length=431445 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/317 (68%), Gaps = 19/317 (6%) Strand=Plus/Minus Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 ||| || ||| ||| |||| |||| || | ||||| ||||||||||| ||||| | || Sbjct 54202 TGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAACATCCTTATGCATCTATT 54143 Query 166596 CCATATGCTGGGTGTAGCA--GGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGC 166653 || ||| | |||||||| ||||||||||| | || | | ||||| || Sbjct 54142 TCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAGTA----CTATGCATGGT 54092 Query 166654 AGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCT-CAAAACTATGG 166712 | || || | || || | || | |||||||| || || | | | | Sbjct 54091 TCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACGAATCCGCGTTAGCAAG- 54033 Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGACCT-ACAACA-----TCGTGGCTGCTCATGGTTA 166766 | || || ||| |||| |||||||| | |||| | | || |||||||||||||| Sbjct 54032 TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTATTGTAGCTGCTCATGGTTA 53973 Query 166767 CTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTT 166826 || | || ||||||||||||| ||| |||||||||||||| || | || ||||| Sbjct 53972 TTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTT 53913 Query 166827 CCTCGCAGCATGGCCTG 166843 | | || || ||||||| Sbjct 53912 CTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 212/317 (67%), Gaps = 19/317 (6%) Strand=Plus/Plus Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595 ||| || ||||||| |||| |||| ||||| ||||| ||||||||||| ||||| | || Sbjct 4332918 TGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAACATCCTTATGCATCTATT 4332977 Query 166596 CCATATGCTGGGTGTAG--CAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGC 166653 || ||| | ||||||| | ||||||||||| | || | | ||||| || Sbjct 4332978 TCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAGT----ACTATGCATGGT 4333028 Query 166654 AGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGT-CTCAAAACTATGG 166712 | || | || | || || | || | |||||||| || | | | | | | Sbjct 4333029 TCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACGAATCCGCGTTAGCA-AG 4333087 Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA-----CATCGTGGCTGCTCATGGTTA 166766 | || || ||| |||| |||||||| ||||| ||| || | |||||||||||| Sbjct 4333088 TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCATTGTAGTTGCTCATGGTTA 4333147 Query 166767 CTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTT 166826 || | || ||| || |||||| ||| ||||||||||| || || ||||| Sbjct 4333148 TTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTCGACTTCTTGACATTTCTT 4333207 Query 166827 CCTCGCAGCATGGCCTG 166843 | | || || ||||||| Sbjct 4333208 CTTGGCTGCGTGGCCTG 4333224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567180530786400