Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 163 3e-35
seq1035 149 7e-31
seq4 134 2e-26
seq9 131 2e-25
seq1024 105 8e-18
seq1063 93.3 5e-14
seq10 84.2 2e-11
>seq1382
Length=172696
Score = 163 bits (180), Expect = 3e-35
Identities = 247/343 (72%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 166573 CACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCA--GGTGTATTCGGTGGGT 166630
||||||||||| ||||| || || | ||| | ||| |||| ||||||||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 166631 CACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACT 166689
| || ||| || ||||| || | || || || | | | | || | || ||||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACT 123615
Query 166690 GAAACTGAGTCT-CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAG----AGACCTACA 166744
|||| || ||| || | | ||||||| || ||||||||||||| |||| ||||
Sbjct 123616 GAAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACA 123674
Query 166745 ACA-----TCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799
| | | || |||||||||||||| || | || ||||| ||||||| ||| ||
Sbjct 123675 ATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTT 123734
Query 166800 CAACAACTCTCGCTCG--CTGCACTTC--TTCCTCGCAGCATGGCCTGTTGTCGGTATCT 166855
|||||||||||||| || || | ||| | ||||| ||||| ||| | |||||||
Sbjct 123735 CAACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 166856 GGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAA 166898
|| | || ||| | ||| ||||||||||||| |||||||||||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1035
Length=594915
Score = 149 bits (164), Expect = 7e-31
Identities = 276/400 (69%), Gaps = 34/400 (9%)
Strand=Plus/Plus
Query 167774 TTTGGTGTTGCAGCGATATTTAGAT---TCCTACTATTCCTACAGGGTTTCCATAACTGG 167830
|||||||| ||||| |||||| ||| |||| ||||| || | | |||| |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGG 237052
Query 167831 ACGCTCAACCCTTTCCATATGATGGGAGTTGCTG-GTATCCTAGGCGGTGCATTGCTTTC 167889
||| | |||||||| |||||||||||||| | |||| |||||| ||| |||| |
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAGTAT--TAGGCGCTGCTCTGCTATG 237110
Query 167890 TGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGA----GCAAGCAA 167945
|| || |||||| | ||| | || ||| | | ||||||||| | |||| |
Sbjct 237111 CGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATAC 237166
Query 167946 ACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTA 168005
| ||| | || ||| | | ||||| | || || |||||||| |||||||||||||
Sbjct 237167 ATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTA 237226
Query 168006 ACCGATTCTGGTCTCAAAT-----TTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCA 168060
|||| || ||||| ||||| ||| || ||||||| |||||| ||||||
Sbjct 237227 ACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG----- 237281
Query 168061 CTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATT--GGTATCA-- 168116
| ||||| |||| || | || | || | |||| ||| ||||| |||| |
Sbjct 237282 ---CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAG 237338
Query 168117 TCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTC 168156
||||||| || || ||||| ||||| |||||||| || ||
Sbjct 237339 TCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378
>seq4
Length=30051516
Score = 134 bits (148), Expect = 2e-26
Identities = 132/169 (78%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 166869 TGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGA 166928
|||| ||||||||||||| |||||||| || |||||||| |||||||| ||| | | ||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 166929 TGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGT-- 166986
||||||||||||| | || || ||| ||| || |||| |||||| ||| |||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 166987 --ATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCT 167033
||||||||||| || || ||||||||||| ||||||||| | || ||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq9
Length=34148863
Score = 131 bits (144), Expect = 2e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 166414 CTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCA 166473
|| |||||||||||||||||| || ||||| || || ||||||||||| || | ||
Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009
Query 166474 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATC 166533
|| ||| || |||| ||| | |||||||| ||||||||| | ||||| | || ||
Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069
Query 166534 AGTGGCACCTTCAACTACATG-CTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCC 166592
| ||| ||||||| |||| |||| || | ||||| ||||||||||| ||||| |
Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128
Query 166593 CTTCCATATGCTGGGTGTAGCAGGTGTATTC 166623
| || ||| | |||||| | |||||||||
Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1024
Length=717246
Score = 105 bits (116), Expect = 8e-18
Identities = 75/86 (87%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 166948 AACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGT 167007
||||||||||| ||| || ||||||||||| || ||||||||||||||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 167008 AATGCTCACAACTTCCCTCTGGATCT 167033
|||||||||||||||||||| || ||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
>seq1063
Length=431445
Score = 93.3 bits (102), Expect = 5e-14
Identities = 214/317 (68%), Gaps = 19/317 (6%)
Strand=Plus/Minus
Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595
||| || ||| ||| |||| |||| || | ||||| ||||||||||| ||||| | ||
Sbjct 54202 TGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAACATCCTTATGCATCTATT 54143
Query 166596 CCATATGCTGGGTGTAGCA--GGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGC 166653
|| ||| | |||||||| ||||||||||| | || | | ||||| ||
Sbjct 54142 TCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAGTA----CTATGCATGGT 54092
Query 166654 AGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCT-CAAAACTATGG 166712
| || || | || || | || | |||||||| || || | | | |
Sbjct 54091 TCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACGAATCCGCGTTAGCAAG- 54033
Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGACCT-ACAACA-----TCGTGGCTGCTCATGGTTA 166766
| || || ||| |||| |||||||| | |||| | | || ||||||||||||||
Sbjct 54032 TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTATTGTAGCTGCTCATGGTTA 53973
Query 166767 CTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTT 166826
|| | || ||||||||||||| ||| |||||||||||||| || | || |||||
Sbjct 53972 TTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTT 53913
Query 166827 CCTCGCAGCATGGCCTG 166843
| | || || |||||||
Sbjct 53912 CTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 84.2 bits (92), Expect = 2e-11
Identities = 212/317 (67%), Gaps = 19/317 (6%)
Strand=Plus/Plus
Query 166536 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTT 166595
||| || ||||||| |||| |||| ||||| ||||| ||||||||||| ||||| | ||
Sbjct 4332918 TGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAACATCCTTATGCATCTATT 4332977
Query 166596 CCATATGCTGGGTGTAG--CAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGC 166653
|| ||| | ||||||| | ||||||||||| | || | | ||||| ||
Sbjct 4332978 TCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAGT----ACTATGCATGGT 4333028
Query 166654 AGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGT-CTCAAAACTATGG 166712
| || | || | || || | || | |||||||| || | | | | | |
Sbjct 4333029 TCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACGAATCCGCGTTAGCA-AG 4333087
Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA-----CATCGTGGCTGCTCATGGTTA 166766
| || || ||| |||| |||||||| ||||| ||| || | ||||||||||||
Sbjct 4333088 TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCATTGTAGTTGCTCATGGTTA 4333147
Query 166767 CTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTT 166826
|| | || ||| || |||||| ||| ||||||||||| || || |||||
Sbjct 4333148 TTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTCGACTTCTTGACATTTCTT 4333207
Query 166827 CCTCGCAGCATGGCCTG 166843
| | || || |||||||
Sbjct 4333208 CTTGGCTGCGTGGCCTG 4333224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567180530786400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |