Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3 91.5 2e-13
seq4874 89.7 6e-13
seq10 89.7 6e-13
seq7 89.7 6e-13
seq2 89.7 6e-13
seq6 87.8 2e-12
seq8 86.0 7e-12
seq1020 84.2 2e-11
seq9 84.2 2e-11
seq5 84.2 2e-11
seq4421 82.4 9e-11
>seq3
Length=30470407
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/84 (85%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||||| | | | |||||
Sbjct 26879480 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 26879539
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 26879540 TGGGTTCAAATCCCACTTCTGACA 26879563
Score = 89.7 bits (98), Expect = 6e-13
Identities = 78/96 (81%), Gaps = 6/96 (6%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 7803824 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7803767
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356
|||||||||| || ||||| |||||| || ||||
Sbjct 7803766 GCGTGGGTTCAAATCCCACTTCTGACATTTTTTTAT 7803731
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/94 (82%), Gaps = 4/94 (4%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||||
Sbjct 26879652 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 26879711
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||| || ||||| ||||| |||||| ||
Sbjct 26879712 TGGGTTCAAATCCCACTTCTGAC--ATTATTCTT 26879743
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||||
Sbjct 26718870 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 26718929
Query 126324 TGGGTTCGAACCCCACACCTGACA 126347
||||||| || ||||| ||||||
Sbjct 26718930 TGGGTTCAAATCCCACTTCTGACA 26718953
Score = 84.2 bits (92), Expect = 2e-11
Identities = 83/105 (79%), Gaps = 8/105 (8%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 7807563 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 7807506
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
|||||||||| || ||||| ||||| ||| ||| | ||||||
Sbjct 7807505 GCGTGGGTTCAAATCCCACTTCTGAC--ATTTTTAATATAATTTT 7807463
>seq4874
Length=2737
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/90 (83%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 2025 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2082
Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357
||| || |||||| ||| | ||||||||||
Sbjct 2083 TTCAAATCCCACAGCTGTC-AATTATTATT 2111
>seq10
Length=33665772
Score = 89.7 bits (98), Expect = 6e-13
Identities = 80/98 (82%), Gaps = 8/98 (8%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 31750372 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 31750429
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT--ATTATT 126357
||||||||| || ||||| |||||||| | ||||||
Sbjct 31750430 CGTGGGTTCAAATCCCACTTCTGACAAAATAAATTATT 31750467
Score = 89.7 bits (98), Expect = 6e-13
Identities = 80/98 (82%), Gaps = 8/98 (8%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 31752914 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 31752857
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT--ATTATT 126357
||||||||| || ||||| |||||||| | ||||||
Sbjct 31752856 CGTGGGTTCAAATCCCACTTCTGACAAAATAAATTATT 31752819
Score = 82.4 bits (90), Expect = 9e-11
Identities = 87/111 (78%), Gaps = 9/111 (8%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||| | || |
Sbjct 31750957 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTTGTGAGAGGG 31751014
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA--TTATTATTGGAATT-TTTGTT 126369
||||||||| || ||||| ||||||| ||||||| | || ||||||
Sbjct 31751015 CGTGGGTTCAAATCCCACTTTTGACAAAATATATTATTTTATTTATTTGTT 31751065
>seq7
Length=28617404
Score = 89.7 bits (98), Expect = 6e-13
Identities = 87/110 (79%), Gaps = 8/110 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 3408650 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3408707
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370
|||||||||| || ||||| ||||| |||||| || ||| | | |||
Sbjct 3408708 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTCATGAAATGTATTTTG 3408755
>seq2
Length=22054697
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321
|| || ||| |||||||||||||||||||||||||||||| | |||||| || | |
Sbjct 16226026 TAGAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 16225969
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTA 126352
||||||||| || |||||| ||| |||||||
Sbjct 16225968 CGTGGGTTCAAATCCCACAGCTGTCAAATTA 16225938
Score = 89.7 bits (98), Expect = 6e-13
Identities = 75/91 (82%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321
|| || ||| |||||||||||||||||||||||||||||| | |||||| || | |
Sbjct 17836507 TAGAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 17836450
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTA 126352
||||||||| || |||||| ||| |||||||
Sbjct 17836449 CGTGGGTTCAAATCCCACAGCTGTCAAATTA 17836419
>seq6
Length=34899179
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| | ||| |||||||
Sbjct 11138424 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAACGG--GCGTGGG 11138367
Query 126328 TTCGAACCCCACACCTGACAAA 126349
||| || |||||| ||| ||||
Sbjct 11138366 TTCAAATCCCACAGCTGTCAAA 11138345
Score = 82.4 bits (90), Expect = 9e-11
Identities = 68/82 (83%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 11158981 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 11158924
Query 126328 TTCGAACCCCACACCTGACAAA 126349
||| || |||||| ||| ||||
Sbjct 11158923 TTCAAATCCCACAGCTGTCAAA 11158902
>seq8
Length=35439739
Score = 86.0 bits (94), Expect = 7e-12
Identities = 84/106 (79%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 29588942 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 29589001
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||||||| || ||||| ||||| | |||| ||| ||||||| ||
Sbjct 29589002 TGGGTTCAAATCCCACTTCTGAC-ATTTATAATTTTAATTTTTTTT 29589046
>seq1020
Length=767776
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 338613 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 338670
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 338671 CGTGGGTTCAAATCCCACTTCTGACA 338696
>seq9
Length=34148863
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 32204183 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 32204240
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 32204241 CGTGGGTTCAAATCCCACTTCTGACA 32204266
>seq5
Length=29377369
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 546574 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 546631
Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349
|||||| || |||||| ||| ||||
Sbjct 546632 GGGTTCAAATCCCACAGCTGTCAAA 546656
>seq4421
Length=17649
Score = 82.4 bits (90), Expect = 9e-11
Identities = 74/92 (80%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 17310 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 17367
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTAT 126356
|||||| || |||||| ||| || || ||||
Sbjct 17368 GGGTTCAAATCCCACAGCTGTCAGTTTTTTAT 17399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556810271843160
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