Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 2e-13 seq4874 89.7 6e-13 seq10 89.7 6e-13 seq7 89.7 6e-13 seq2 89.7 6e-13 seq6 87.8 2e-12 seq8 86.0 7e-12 seq1020 84.2 2e-11 seq9 84.2 2e-11 seq5 84.2 2e-11 seq4421 82.4 9e-11 >seq3 Length=30470407 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 26879480 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTTAGAGAGCG 26879539 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 26879540 TGGGTTCAAATCCCACTTCTGACA 26879563 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/96 (81%), Gaps = 6/96 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 7803824 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 7803767 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||||||| || ||||| |||||| || |||| Sbjct 7803766 GCGTGGGTTCAAATCCCACTTCTGACATTTTTTTAT 7803731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/94 (82%), Gaps = 4/94 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 26879652 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 26879711 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| || ||||| ||||| |||||| || Sbjct 26879712 TGGGTTCAAATCCCACTTCTGAC--ATTATTCTT 26879743 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 26718870 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTGAGAGAGCG 26718929 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 26718930 TGGGTTCAAATCCCACTTCTGACA 26718953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 8/105 (8%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 7807563 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 7807506 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||||| || ||||| ||||| ||| ||| | |||||| Sbjct 7807505 GCGTGGGTTCAAATCCCACTTCTGAC--ATTTTTAATATAATTTT 7807463 >seq4874 Length=2737 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2025 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2082 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| | |||||||||| Sbjct 2083 TTCAAATCCCACAGCTGTC-AATTATTATT 2111 >seq10 Length=33665772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/98 (82%), Gaps = 8/98 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 31750372 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 31750429 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT--ATTATT 126357 ||||||||| || ||||| |||||||| | |||||| Sbjct 31750430 CGTGGGTTCAAATCCCACTTCTGACAAAATAAATTATT 31750467 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/98 (82%), Gaps = 8/98 (8%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 31752914 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 31752857 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT--ATTATT 126357 ||||||||| || ||||| |||||||| | |||||| Sbjct 31752856 CGTGGGTTCAAATCCCACTTCTGACAAAATAAATTATT 31752819 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/111 (78%), Gaps = 9/111 (8%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||| | || | Sbjct 31750957 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTTGTGAGAGGG 31751014 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA--TTATTATTGGAATT-TTTGTT 126369 ||||||||| || ||||| ||||||| ||||||| | || |||||| Sbjct 31751015 CGTGGGTTCAAATCCCACTTTTGACAAAATATATTATTTTATTTATTTGTT 31751065 >seq7 Length=28617404 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/110 (79%), Gaps = 8/110 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3408650 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3408707 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 |||||||||| || ||||| ||||| |||||| || ||| | | ||| Sbjct 3408708 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTCATGAAATGTATTTTG 3408755 >seq2 Length=22054697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321 || || ||| |||||||||||||||||||||||||||||| | |||||| || | | Sbjct 16226026 TAGAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 16225969 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||||| || |||||| ||| ||||||| Sbjct 16225968 CGTGGGTTCAAATCCCACAGCTGTCAAATTA 16225938 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321 || || ||| |||||||||||||||||||||||||||||| | |||||| || | | Sbjct 17836507 TAGAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 17836450 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTA 126352 ||||||||| || |||||| ||| ||||||| Sbjct 17836449 CGTGGGTTCAAATCCCACAGCTGTCAAATTA 17836419 >seq6 Length=34899179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| | ||| ||||||| Sbjct 11138424 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGTCCGAACGG--GCGTGGG 11138367 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 11138366 TTCAAATCCCACAGCTGTCAAA 11138345 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 11158981 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 11158924 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 11158923 TTCAAATCCCACAGCTGTCAAA 11158902 >seq8 Length=35439739 Score = 86.0 bits (94), Expect = 7e-12 Identities = 84/106 (79%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 29588942 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 29589001 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| ||||| | |||| ||| ||||||| || Sbjct 29589002 TGGGTTCAAATCCCACTTCTGAC-ATTTATAATTTTAATTTTTTTT 29589046 >seq1020 Length=767776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 338613 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 338670 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 338671 CGTGGGTTCAAATCCCACTTCTGACA 338696 >seq9 Length=34148863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 32204183 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 32204240 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 32204241 CGTGGGTTCAAATCCCACTTCTGACA 32204266 >seq5 Length=29377369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 546574 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 546631 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| || |||||| ||| |||| Sbjct 546632 GGGTTCAAATCCCACAGCTGTCAAA 546656 >seq4421 Length=17649 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 17310 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 17367 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||| || |||||| ||| || || |||| Sbjct 17368 GGGTTCAAATCCCACAGCTGTCAGTTTTTTAT 17399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556810271843160