Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq10 129 5e-25 seq5 123 2e-23 seq9 120 3e-22 seq8 113 4e-20 seq6 105 6e-18 seq1 105 6e-18 seq11 91.5 1e-13 >seq10 Length=33665772 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || |||| ||| | ||||| || || |||| |||||||| ||| | | Sbjct 14516248 GATGCAAATATTCATTAAGACTCTCACCGGCAAGACCATCACCCTTGAAGTTGAATCTTC 14516189 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || | ||| ||||||||||| || |||||||||||||| || || Sbjct 14516188 CGATACTATTGATAATGTGAAAGCTAAAATTCAAGATAAAGAGGGTATTCCACCGGACCA 14516129 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | | || ||||| || ||||| ||||||||| |||||| | | || ||||| Sbjct 14516128 GCAAAGGTTAATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTTGCGGACTACAA 14516069 Query 22398 CATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 14516068 TATCCAGAAGGAGTCCACC 14516050 >seq5 Length=29377369 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | ||||| || || |||| || || ||||| | | | Sbjct 457755 GATGCAAATTTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTC 457814 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | | | || | ||| ||| || || ||||||||||| || |||| ||||| Sbjct 457815 AGACACGATCGCCAATCTTAAAGCAAAGATCCATGACAAGGAGGGCATCTCACCGGATCA 457874 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || |||||||| |||||| | |||||| |||||| | ||| |||| Sbjct 457875 GCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTACAG 457934 Query 22398 CATTCAAAAAGAATCCAC 22415 |||||| || |||||||| Sbjct 457935 CATTCAGAAGGAATCCAC 457952 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || | || || | ||||| ||||| ||| || || || || | | | Sbjct 457525 ATGCAAATCTTCATCAAGACCCTTACCGGCAAAACCACCACCCTCGAGGTCGAGAGCTCG 457584 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || ||||||||||||||||| || || || Sbjct 457585 GACACCATCGAGAATGTGAAGGCTAAGATGCAAGACAAGGAGGGTATCCCTGTGGACCAG 457644 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||||||||| || || || ||| ||||||| | |||||||| | Sbjct 457645 CAAAGGCTCATCTTTGCCGGCAAGCAATTGGAAGATGGCCGCACCTTAGCCGATTACTCC 457704 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | ||||| || || || | || || || Sbjct 457705 ATCCACAAGGAATCTACCCTTCATTTGGTAATGAGACTCCGGGGGGG 457751 >seq9 Length=34148863 Score = 120 bits (132), Expect = 3e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 22238 CTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCA 22297 |||| ||||| || || |||| ||||| ||||| | | | || ||| | ||| || | | Sbjct 33549404 CTTTGACCGGGAAGACCATCACCCTTGAGGTGGAGAGCTCGGACACCATCGACAATGTAA 33549345 Query 22298 AACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCG 22357 | || ||||| ||||||||||||||||| || || || ||| | || || ||||| | Sbjct 33549344 AGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAGCAAAGGCTCATCTTTGCTG 33549285 Query 22358 GCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 |||| ||| | |||||| ||||||| | | |||||||||||||| || || || ||| Sbjct 33549284 GCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATTCAGAAGGAGTCTACC 33549226 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || | ||||| || || | || | || ||||| | | | Sbjct 33541209 ATGCAGATCTTTGTTAAGACCCTCACCGGGAAGACCATTACCTTGGAGGTGGAGAGCTCG 33541268 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| |||||||| ||||| Sbjct 33541269 GACACGATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33541328 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || || || ||| ||||||| ||||||| | | ||||||||| Sbjct 33541329 CAGAGGCTCATCTTCGCTGGGAAGCAGCTAGAGGACGGCCGCACCCTGGCAGATTACAAC 33541388 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||||||| Sbjct 33541389 ATTCAGAAGGAATCCACC 33541406 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || | || || || || | || | || ||||| | | Sbjct 33549195 ATGCAGATCTTTGTTAAGACGCTCACAGGGAAGACCATTACCTTGGAGGTGGAGAGTTCG 33549136 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || || ||||||||||| |||||||| ||||| Sbjct 33549135 GACACGATTGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 33549076 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || || ||| | ||||| |||||| | | ||||||||| Sbjct 33549075 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGACGGGCGCACCCTGGCAGATTACAAC 33549016 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || ||||||||| Sbjct 33549015 ATTCAGAAGGAATCCACC 33548998 >seq8 Length=35439739 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | || || || ||| |||| || || |||||| | Sbjct 26901038 AAGATGCAGATCTTCGTGAAGACGCTGACGGGGAAGACGATCACCCTCGAGGTGGAATCG 26900979 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | ||| | | || || ||||| ||||||||||| || || || ||| Sbjct 26900978 TCGGACACGATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCGGAT 26900919 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | |||||| ||| ||| || |||| ||| Sbjct 26900918 CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGAACCCTCGCCGACTAC 26900859 Query 22396 AACATTCAAAAAGAATCCAC 22415 |||||||| || || ||||| Sbjct 26900858 AACATTCAGAAGGAGTCCAC 26900839 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| || || || || | | | Sbjct 1222514 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTCG 1222455 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| || || || || || Sbjct 1222454 GACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1222395 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | |||||| ||||||| | |||| || ||| Sbjct 1222394 CAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTATAAC 1222335 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || |||||| | ||| | || || || | | |||||| Sbjct 1222334 ATTCAGAAGGAGTCCACCCTTCATCTGGTGCTGAGACTCAGGGGAGGT 1222287 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | ||||| || || | || | || || |||| | Sbjct 4857767 AGATGCAGATCTTTGTGAAGACCCTCACCGGGAAGACCATAACCTTGGAGGTCGAAAGCT 4857826 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || | || || || || ||||||||||| || || || || | Sbjct 4857827 CTGACACCATCGACAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 4857886 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | || || ||||| ||||| ||| | ||||| |||||| || |||| |||| Sbjct 4857887 AGCAAAGGCTCATCTTTGCAGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCCGACTACA 4857946 Query 22397 ACATTCAAAAAGAATCCACC 22416 ||||||| || || |||||| Sbjct 4857947 ACATTCAGAAGGAGTCCACC 4857966 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || ||||| | || || || || |||| || || || ||| || Sbjct 1223459 AGATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTAGAGGTTGAATCCT 1223400 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | ||| || | || || || |||||||||||||| || || ||||| | Sbjct 1223399 CCGACACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGGATCCCCCCCGACC 1223340 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || || || || || ||| | || || ||||||| | |||| || | Sbjct 1223339 AGCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTATA 1223280 Query 22397 ACATTCAAAAAGAATCCACC 22416 ||||||| || || |||||| Sbjct 1223279 ACATTCAGAAGGAGTCCACC 1223260 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || | | | Sbjct 1222286 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTGGAGGTTGAGAGCTCT 1222227 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| || || |||||||||||||||||||| || || Sbjct 1222226 GACACGATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGTATTCCACCGGACCAG 1222167 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||| ||| | ||||| |||||| | |||||||||| Sbjct 1222166 CAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATTACAAT 1222107 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || ||||| Sbjct 1222106 ATTCAGAAGGAGTCCAC 1222090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| || || || || ||||| | || || || |||||||| Sbjct 1222658 AAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAACAGAGGCTGATCTTCGCCGGCAAG 1222599 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| ||||||| | |||| || |||||||| || || |||||| Sbjct 1222598 CAGCTCGAGGATGGCCGCACCTTGGCCGACTATAACATTCAGAAGGAGTCCACC 1222545 >seq6 Length=34899179 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | || || || || ||||||| || || || | | | Sbjct 13154543 GATGCAAATTTTTGTGAAAACCCTCACGGGGAAGACCATCACTCTGGAGGTTGAGAGCTC 13154602 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| || | || ||| || || ||||||||||| || ||||| || || Sbjct 13154603 GGACACTATCGACAATGTGAAGGCAAAGATACAGGACAAGGAGGGAATCCCACCAGACCA 13154662 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| || || ||| | |||||| ||||| | | || || || Sbjct 13154663 ACAGAGGCTAATCTTTGCGGGTAAGCAGCTCGAGGATGGGCGCACACTGGCAGACTATAA 13154722 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || |||||||| Sbjct 13154723 CATCCAGAAGGAATCCAC 13154740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 22244 CCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAA 22303 ||||||| || |||| ||||| || || | | | || || | ||| || | || || Sbjct 13154341 CCGGTAAGACCATCACCCTTGAGGTTGAGAGCTCGGACACTATCGACAATGTGAAGGCAA 13154400 Query 22304 AAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAAC 22363 | || || ||||||||||| ||||| || || || || | || || ||||| ||||| | Sbjct 13154401 AGATACAGGACAAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATCTTTGCTGGCAAGC 13154460 Query 22364 AGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATT 22423 | || |||||| ||||||| | | || || || || || || ||||| ||| | || | Sbjct 13154461 AATTGGAGGATGGCCGCACCTTGGCTGACTATAATATCCAGAAGGAATCTACCCTCCACT 13154520 Query 22424 TAGT 22427 | || Sbjct 13154521 TGGT 13154524 >seq1 Length=27573629 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || || || | ||||| || ||| |||| || || ||||| | Sbjct 19376325 AAGATGCAGATCTTCGTGAAGACCCTCACCGGGAAGACGATCACCCTCGAGGTGGAGTCT 19376266 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || ||||||||||| || || || || Sbjct 19376265 TCGGACACCATCGACAACGTCAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCGGAC 19376206 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || ||||||||||| || ||| | ||||| |||||| || | || ||| Sbjct 19376205 CAGCAGCGCCTCATATTTGCCGGGAAGCAGCTCGAGGACGGGCGCACCCTCGCAGACTAC 19376146 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 19376145 AACATCCAGAAGGAGTCCACC 19376125 >seq11 Length=25514024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || || ||| |||| ||||| ||||| | | Sbjct 15140937 ATGCAGATCTTCGTGAAGACTTTGACGGGGAAGACGATCACCCTTGAGGTGGAGTCGTCG 15140878 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || ||||||||||| || || || || || Sbjct 15140877 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 15140818 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| ||||||| || |||| || ||| Sbjct 15140817 CAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGCCGCACCCTCGCCGACTATAAC 15140758 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 15140757 ATCCAGAAGGAGTCTACC 15140740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419690867057335