Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 1e-13 seq8 84.2 2e-11 >seq5 Length=29377369 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || || ||||| ||| |||| ||| | || Sbjct 457756 ATGCAAATTTTTGTCAAAACCCTCACCGGAAACACCATCACCCTGGAGGTGGAGAGCTCA 457815 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || ||| | ||| ||||||| ||| || || || ||||| | ||| | | Sbjct 457816 GACACGATCGCCAATCTTAAAGCAAAGATCCATGACAAGGAGGGCATCTCACCGG---AT 457872 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || |||||||| || ||||| || || ||| ||| ||| ||| ||| Sbjct 457873 CAGCAGAGGCTCATCTTTGCCGGGAAACAGCTCGAGGATGGCCGCACTCTGGACGACTAC 457932 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 | |||||||||||||| |||||||| |||| Sbjct 457933 AGCATTCAGAAGGAATCCACTCTTCACCTGGT 457964 >seq8 Length=35439739 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| ||||||||||||||||| || || || || || ||||||||| Sbjct 1222171 ACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTCGAGGACGGTCGCACCCTGGCCGATT 1222112 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||||||||||| || |||||||| |||| Sbjct 1222111 ACAATATTCAGAAGGAGTCCACTCTTCACCTGGT 1222078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358093117034686