Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq11 86.0 5e-12 seq9 84.2 2e-11 >seq8 Length=35439739 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||| | || || ||| || || || || || Sbjct 26900838 CGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCC 26900897 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||||||||| || ||||| || ||||| || ||||| |||||| || Sbjct 26900898 GGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 26900957 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||||| | ||||| || || | ||| | ||| || || ||||| || Sbjct 26900958 CACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGT 26901017 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 26901018 CTTCACGAAGATCTGCAT 26901035 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||||| || | ||| | || || || || |||||||| || ||| Sbjct 1222285 ATACCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCG 1222344 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || || ||||||| | ||| ||||||||| Sbjct 1222345 GCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGA 1222404 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | ||||| | | ||| Sbjct 1222405 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCG 1222464 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||| ||||| || ||||| |||||||| Sbjct 1222465 ACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||| || | ||| | ||| || || || || |||||||||||| | ||| || Sbjct 4858214 AGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGG 4858155 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||||| || ||||| || || ||||||| | || |||||||| || ||||| || Sbjct 4858154 CCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCC 4858095 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| || | | || | ||||| | | ||||| |||| ||| Sbjct 4858094 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCCGAGCTCTCGACCTCCAAGGTA 4858035 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | || || || || ||||| || || || ||||||||| Sbjct 4858034 ATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCATG 4857996 >seq11 Length=25514024 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | |||||| || || || || || || Sbjct 16241445 GTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGCTTGCCC 16241504 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | || |||||||| ||||||||||| ||||| |||||| || Sbjct 16241505 GCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTC 16241564 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | ||||| || | ||| | ||| || ||||| || || Sbjct 16241565 ACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGTC 16241624 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 16241625 TTCACAAAGATCTGCAT 16241641 >seq9 Length=34148863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || |||||||||||||| || || || || || || || || ||| Sbjct 33541405 GTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCGTCCTCTAGCTGCTTCCCA 33541346 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| || ||||| ||||| || || ||||| ||||| || Sbjct 33541345 GCGAAGATGAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTG 33541286 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | || || |||| ||| | || || ||||| || || Sbjct 33541285 ACGTTGTCGATCGTGTCCGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCGGTGAGGGTC 33541226 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || ||||| ||||||||| || Sbjct 33541225 TTAACAAAGATCTGCATGCCT 33541205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420097231103508