Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq9 367 2e-96
seq6 343 3e-89
>seq9
Length=34148863
Score = 367 bits (406), Expect = 2e-96
Identities = 523/729 (72%), Gaps = 18/729 (2%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||| || ||||| |||| |||||||| ||| | | ||||||
Sbjct 33079136 CTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCTTCATG 33079195
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| || ||| | ||||| ||| |||||||||||||||||| ||||| ||||||
Sbjct 33079196 CGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 33079255
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA-GCG 42601
| ||||| ||| ||||| || || ||| |||| ||| || ||| |||| ||| |
Sbjct 33079256 ATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAG 33079315
Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661
|| | | || ||| | ||||| || || | ||| | || ||||| ||||||||
Sbjct 33079316 TATC-GCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGC 33079374
Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721
|| ||||||||| | || || | |||| |||| | || || ||||| ||
Sbjct 33079375 CCTTCGCTGGATCGA---TTCCTCCGGCTCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTG 33079431
Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781
||||||||||||||||||||| || ||||| | | ||||||||||||||| | | |
Sbjct 33079432 CGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGGCTCAAG-AAACGCG 33079490
Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840
| | |||||||| ||||||||||| |||||||||||| | | |||||||| || ||
Sbjct 33079491 GCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACT 33079550
Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900
| ||||| |||||||||| ||| |||| |||| | |||||| || |||| ||
Sbjct 33079551 GCGACTTCGCCTGCCTCC---TCTACAGCCTCCTCCGCAACAAGCTGTCCGAGGAAGCGG 33079607
Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC----ACGCAGTCG 42956
||||||| ||| | |||| || || || |||||| ||||||| || |||||
Sbjct 33079608 TCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACGCA---- 33079663
Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016
|| || || | || ||||| |||||| || |||||| || |||||||| ||| |||
Sbjct 33079664 CTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTG 33079723
Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076
||||||| || || | | |||| | | || | ||| || | |||||||
Sbjct 33079724 GCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCTTC 33079783
Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136
|||| |||||| ||||||| || |||| ||| ||||||| ||||||||| | || | |
Sbjct 33079784 GACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTGGGC 33079843
Query 43137 GACTACCAG 43145
|| ||||||
Sbjct 33079844 GAGTACCAG 33079852
Score = 352 bits (390), Expect = 5e-92
Identities = 517/725 (71%), Gaps = 10/725 (1%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||| |||||||| ||| ||||||||| ||| || ||||||||
Sbjct 1096565 CTTGCCTTCTTCGCCGCCTCAGACGGCATCGTCCTTGAGAACCTCGCCGCCCGGTTCATG 1096624
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| || ||| | ||||| ||| |||||||||||||||||| ||||| ||||||
Sbjct 1096625 CGCGACGTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 1096684
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||||||| ||||| || || ||| |||| |||||| ||| || | ||||
Sbjct 1096685 ATCCACTCTGAGATGTACTCCCTCCTCCTCGACACCTACATCAAGGACCCTGACGAGAAG 1096744
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| | | || ||| ||||| |||||| | |||| || ||||| ||||||||
Sbjct 1096745 ACCCGTCTCTTCCGAGCCATCGAGACGGTCCCCTCTGTCGCCCGAAAGGCCGACTGGGCC 1096804
Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
|| |||||| || | ||| | |||| | |||| | | || ||||| ||
Sbjct 1096805 CTGCGCTGGATTGAATCTTCCGGC---TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGT 1096861
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781
|||||||| ||||||||||| ||| ||||| | | ||||| ||||||||| || ||
Sbjct 1096862 GTCGAGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGC 1096921
Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841
|| ||||| || ||||||||||||||||| || ||| | | |||||||| || ||| |
Sbjct 1096922 CTC-ATGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCATTG 1096980
Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901
||||| |||||||||| ||| |||| |||| | |||||| ||| |||| || ||
Sbjct 1096981 CGACTTCGCCTGCCTCC---TCTACAGCCTCCTCCGCAACAAGCTGTCGGAGGACCGTGT 1097037
Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961
|||||||||| | | || || || || |||||| |||||| | | | || ||
Sbjct 1097038 CCGGGCCATCGTTGCCGACGCTGTCGACATCGAGCGGGAGTTTGTTTGTGACGCCCTTCC 1097097
Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021
||| |||| ||||| |||||| |||||| ||| || ||||||| ||| || |||||
Sbjct 1097098 CGTAGCCCTCGTCGGGATGAACGGCGACCTTATGAGCCAGTACATAGAGTTTGTGGCCGA 1097157
Query 43022 CCATCT-CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080
|| || | || | || |||||| | | | | | |||||||||||
Sbjct 1097158 CCGCCTGCTTGAGTCA-CTGGGTCACGGTAAGATGTTTGGGGTGGTCAACCCCTTCGACT 1097216
Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140
|||||| ||||||| || |||| ||||| ||||| ||||| ||| | || | || |
Sbjct 1097217 GGATGGAGCTCATCTCGCTGCAGGGGAAGACGAACTTCTTCGAAAAGAGGGTTGGAGATT 1097276
Query 43141 ACCAG 43145
|||||
Sbjct 1097277 ACCAG 1097281
>seq6
Length=34899179
Score = 343 bits (380), Expect = 3e-89
Identities = 595/854 (70%), Gaps = 17/854 (2%)
Strand=Plus/Plus
Query 42299 CATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358
||||||| | |||||||||||| | |||| ||||||||| |||||| | |||||
Sbjct 4328184 CATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCAGAGGAGGTGGACCT 4328243
Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTCACTGTCT----GAGAACGAAAAGTTTTTCCTCA 42414
| | |||| || ||| || ||| | || || |||| ||| ||
Sbjct 4328244 GTCGCCGGACCTCTCCCAGTGGCAG-CACCGCCTCTCCGACGACGAGCGCCACTTCGTCT 4328302
Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474
|| | || ||||| || |||||||| |||||||| ||| |||||||||||| ||
Sbjct 4328303 CCCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCC 4328362
Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534
| |||||| || || || | ||||| ||| ||||||||| |||||||| || |
Sbjct 4328363 GCTTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAA 4328422
Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594
| |||||| | ||||| ||| ||||| || || ||| | ||||||||| ||| ||||
Sbjct 4328423 TCGAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCG 4328482
Query 42595 TCGAGC-GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGC 42652
|| | || || || ||| | || || || || | |||||| || ||||||
Sbjct 4328483 ACGTGAAGTTTCGC-CTCTTCCACGCGATCGACACCGT-CCCTGCCGTCGCCCGGAAGGC 4328540
Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712
|| ||||| ||| | ||||| ||| | ||| | | |||| |||| | || || ||
Sbjct 4328541 CGAATGGGCTCTCCAATGGATTGAGTCTTCCGGCTCC---TTCGCCGAGCGACTCGTCGC 4328597
Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772
||| || ||||||||||||||| ||||| ||| ||||| | ||||||||||||||||
Sbjct 4328598 CTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAA 4328657
Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831
| || || || |||||||| ||||||||||| ||||| |||||| | | |||||||
Sbjct 4328658 GAAGCGCGGCCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 4328716
Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891
| || || | |||||||| |||||||| | | ||| |||| | |||||| |||
Sbjct 4328717 GCCTTCACTGCGACTTTGCTTGCCTCCTTTAC---GGCCTCCTCCGCAACAAGCTCTCCG 4328773
Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951
|||| ||||||||| ||| | | || ||||| || |||||| ||||||| ||
Sbjct 4328774 AGGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATCGAGCGGGAGTTCGTCTGCG 4328833
Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011
| | |||||||| | || ||||| ||||| | ||||||| || |||||||| |||
Sbjct 4328834 ACGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTCATGAGCCAGTACATCGAGT 4328893
Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071
|||||||||| || || | | |||| | || | ||| | ||
Sbjct 4328894 TTGTCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAAATGTACGGGGTCTCCAACC 4328953
Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131
| ||||||| ||||| ||||||| || |||| ||||||||||| |||||||| | |
Sbjct 4328954 CTTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGG 4329013
Query 43132 TCGCCGACTACCAG 43145
||| || ||||||
Sbjct 4329014 TCGGTGAGTACCAG 4329027
Score = 334 bits (370), Expect = 1e-86
Identities = 520/729 (71%), Gaps = 18/729 (2%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||| || |||||||| |||||||| ||| ||||||||||| || ||||||||
Sbjct 15336593 CTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCGGCCCGGTTCATG 15336652
Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540
|| || ||| ||| |||||| ||| |||||||||||||||||| || || ||||
Sbjct 15336653 CGCGACGTCCAG--CTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCTATCGAGA 15336710
Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG- 42599
|| | ||||||||| |||| | || ||| |||| |||||| ||| |||| ||||
Sbjct 15336711 ACATCCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGA 15336770
Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC-ATCAAGAAGAAGGCGGACTG 42658
|| | | || ||| | ||||| || || | |||| | || ||||| || ||
Sbjct 15336771 AGTCTC-GCCTCTTCCATGCCATTGACACCGT-CCCTCCTGTCGCCCGCAAGGCCGAGTG 15336828
Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718
|||||| ||||||||| | | | || |||| |||| | || || ||||| |
Sbjct 15336829 GGCGCTACGCTGGATCGAATCCTCTGTCTCA---TTCGCCGAGCGCCTCGTTGCCTTCGC 15336885
Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777
| ||||||||| |||||||||| ||| ||||| | ||||||||||||||||| ||
Sbjct 15336886 CTGCGTCGAGGGAGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCG 15336945
Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837
||| || ||||| || ||||||||||| ||||| |||||| | | |||||||| || |
Sbjct 15336946 AGGCCTC-ATGCCGGGTCTCACCTTCTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCC 15337004
Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897
| | ||||| |||||||||| ||| || | || | |||||| ||| || | |
Sbjct 15337005 ACTGCGACTTCGCCTGCCTCC---TCTACAGTCTTCTTCGCAACAAGCTCTCCGAGTACC 15337061
Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT-CG 42956
| ||||| | ||| | | || ||||| || |||||| ||| ||| || ||| | |
Sbjct 15337062 GTGTCCGTGAAATCGTTGCCGATGCCGTTGACATCGAGCGGGAATTCGTC-TGCAATGCC 15337120
Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016
||||| || |||| ||||| ||||| |||||||||| | |||| ||| ||| |||
Sbjct 15337121 CTGCCGGTCGCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTG 15337180
Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076
||||||| || || | | | ||| | | ||| || | |||||||
Sbjct 15337181 GCCGACCGCCTGCTTGGAGCGCTAGGTTACGAAAAGTTGTACGGGGCGGCCAACCCCTTC 15337240
Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136
|||| |||||| ||||||| || |||| ||||| ||||| ||||||||| | |||| |
Sbjct 15337241 GACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGC 15337300
Query 43137 GACTACCAG 43145
|||||||||
Sbjct 15337301 GACTACCAG 15337309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944253513021840
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