Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 367 2e-96 seq6 343 3e-89 >seq9 Length=34148863 Score = 367 bits (406), Expect = 2e-96 Identities = 523/729 (72%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| || ||||| |||| |||||||| ||| | | |||||| Sbjct 33079136 CTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCTTCATG 33079195 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 33079196 CGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 33079255 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA-GCG 42601 | ||||| ||| ||||| || || ||| |||| ||| || ||| |||| ||| | Sbjct 33079256 ATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAG 33079315 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || | | || ||| | ||||| || || | ||| | || ||||| |||||||| Sbjct 33079316 TATC-GCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGC 33079374 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 || ||||||||| | || || | |||| |||| | || || ||||| || Sbjct 33079375 CCTTCGCTGGATCGA---TTCCTCCGGCTCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTG 33079431 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||||||||||||||||||| || ||||| | | ||||||||||||||| | | | Sbjct 33079432 CGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGCGCTATCTTCTGGCTCAAG-AAACGCG 33079490 Query 42782 GTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | | |||||||| ||||||||||| |||||||||||| | | |||||||| || || Sbjct 33079491 GCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACT 33079550 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGG 42900 | ||||| |||||||||| ||| |||| |||| | |||||| || |||| || Sbjct 33079551 GCGACTTCGCCTGCCTCC---TCTACAGCCTCCTCCGCAACAAGCTGTCCGAGGAAGCGG 33079607 Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC----ACGCAGTCG 42956 ||||||| ||| | |||| || || || |||||| ||||||| || ||||| Sbjct 33079608 TCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACGCA---- 33079663 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 || || || | || ||||| |||||| || |||||| || |||||||| ||| ||| Sbjct 33079664 CTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTG 33079723 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||||| || || | | |||| | | || | ||| || | ||||||| Sbjct 33079724 GCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCTTC 33079783 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| ||||||| || |||| ||| ||||||| ||||||||| | || | | Sbjct 33079784 GACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTGGGC 33079843 Query 43137 GACTACCAG 43145 || |||||| Sbjct 33079844 GAGTACCAG 33079852 Score = 352 bits (390), Expect = 5e-92 Identities = 517/725 (71%), Gaps = 10/725 (1%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| ||| ||||||||| ||| || |||||||| Sbjct 1096565 CTTGCCTTCTTCGCCGCCTCAGACGGCATCGTCCTTGAGAACCTCGCCGCCCGGTTCATG 1096624 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || || ||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 1096625 CGCGACGTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 1096684 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||||||| ||||| || || ||| |||| |||||| ||| || | |||| Sbjct 1096685 ATCCACTCTGAGATGTACTCCCTCCTCCTCGACACCTACATCAAGGACCCTGACGAGAAG 1096744 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | | || ||| ||||| |||||| | |||| || ||||| |||||||| Sbjct 1096745 ACCCGTCTCTTCCGAGCCATCGAGACGGTCCCCTCTGTCGCCCGAAAGGCCGACTGGGCC 1096804 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 || |||||| || | ||| | |||| | |||| | | || ||||| || Sbjct 1096805 CTGCGCTGGATTGAATCTTCCGGC---TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGT 1096861 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781 |||||||| ||||||||||| ||| ||||| | | ||||| ||||||||| || || Sbjct 1096862 GTCGAGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGC 1096921 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || ||||| || ||||||||||||||||| || ||| | | |||||||| || ||| | Sbjct 1096922 CTC-ATGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCATTG 1096980 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||| |||||||||| ||| |||| |||| | |||||| ||| |||| || || Sbjct 1096981 CGACTTCGCCTGCCTCC---TCTACAGCCTCCTCCGCAACAAGCTGTCGGAGGACCGTGT 1097037 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 |||||||||| | | || || || || |||||| |||||| | | | || || Sbjct 1097038 CCGGGCCATCGTTGCCGACGCTGTCGACATCGAGCGGGAGTTTGTTTGTGACGCCCTTCC 1097097 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 ||| |||| ||||| |||||| |||||| ||| || ||||||| ||| || ||||| Sbjct 1097098 CGTAGCCCTCGTCGGGATGAACGGCGACCTTATGAGCCAGTACATAGAGTTTGTGGCCGA 1097157 Query 43022 CCATCT-CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || || | || | || |||||| | | | | | ||||||||||| Sbjct 1097158 CCGCCTGCTTGAGTCA-CTGGGTCACGGTAAGATGTTTGGGGTGGTCAACCCCTTCGACT 1097216 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| ||||||| || |||| ||||| ||||| ||||| ||| | || | || | Sbjct 1097217 GGATGGAGCTCATCTCGCTGCAGGGGAAGACGAACTTCTTCGAAAAGAGGGTTGGAGATT 1097276 Query 43141 ACCAG 43145 ||||| Sbjct 1097277 ACCAG 1097281 >seq6 Length=34899179 Score = 343 bits (380), Expect = 3e-89 Identities = 595/854 (70%), Gaps = 17/854 (2%) Strand=Plus/Plus Query 42299 CATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCT 42358 ||||||| | |||||||||||| | |||| ||||||||| |||||| | ||||| Sbjct 4328184 CATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCAGAGGAGGTGGACCT 4328243 Query 42359 GGCCAAGGACACGGCCGGCTGGGAGTCACTGTCT----GAGAACGAAAAGTTTTTCCTCA 42414 | | |||| || ||| || ||| | || || |||| ||| || Sbjct 4328244 GTCGCCGGACCTCTCCCAGTGGCAG-CACCGCCTCTCCGACGACGAGCGCCACTTCGTCT 4328302 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 || | || ||||| || |||||||| |||||||| ||| |||||||||||| || Sbjct 4328303 CCCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCC 4328362 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||||| || || || | ||||| ||| ||||||||| |||||||| || | Sbjct 4328363 GCTTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAA 4328422 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCG 42594 | |||||| | ||||| ||| ||||| || || ||| | ||||||||| ||| |||| Sbjct 4328423 TCGAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCG 4328482 Query 42595 TCGAGC-GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGC 42652 || | || || || ||| | || || || || | |||||| || |||||| Sbjct 4328483 ACGTGAAGTTTCGC-CTCTTCCACGCGATCGACACCGT-CCCTGCCGTCGCCCGGAAGGC 4328540 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGC 42712 || ||||| ||| | ||||| ||| | ||| | | |||| |||| | || || || Sbjct 4328541 CGAATGGGCTCTCCAATGGATTGAGTCTTCCGGCTCC---TTCGCCGAGCGACTCGTCGC 4328597 Query 42713 CTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAA 42772 ||| || ||||||||||||||| ||||| ||| ||||| | |||||||||||||||| Sbjct 4328598 CTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAA 4328657 Query 42773 GCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | || || || |||||||| ||||||||||| ||||| |||||| | | ||||||| Sbjct 4328658 GAAGCGCGGCCTC-ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 4328716 Query 42832 GGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA 42891 | || || | |||||||| |||||||| | | ||| |||| | |||||| ||| Sbjct 4328717 GCCTTCACTGCGACTTTGCTTGCCTCCTTTAC---GGCCTCCTCCGCAACAAGCTCTCCG 4328773 Query 42892 AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGC 42951 |||| ||||||||| ||| | | || ||||| || |||||| ||||||| || Sbjct 4328774 AGGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATCGAGCGGGAGTTCGTCTGCG 4328833 Query 42952 AGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGT 43011 | | |||||||| | || ||||| ||||| | ||||||| || |||||||| ||| Sbjct 4328834 ACGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTCATGAGCCAGTACATCGAGT 4328893 Query 43012 ACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCC 43071 |||||||||| || || | | |||| | || | ||| | || Sbjct 4328894 TTGTCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAAATGTACGGGGTCTCCAACC 4328953 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | ||||||| ||||| ||||||| || |||| ||||||||||| |||||||| | | Sbjct 4328954 CTTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGG 4329013 Query 43132 TCGCCGACTACCAG 43145 ||| || |||||| Sbjct 4329014 TCGGTGAGTACCAG 4329027 Score = 334 bits (370), Expect = 1e-86 Identities = 520/729 (71%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| |||||||| ||| ||||||||||| || |||||||| Sbjct 15336593 CTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCGGCCCGGTTCATG 15336652 Query 42483 AAAGAGGTGCAGTACTT--TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 || || ||| ||| |||||| ||| |||||||||||||||||| || || |||| Sbjct 15336653 CGCGACGTCCAG--CTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCTATCGAGA 15336710 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG- 42599 || | ||||||||| |||| | || ||| |||| |||||| ||| |||| |||| Sbjct 15336711 ACATCCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGA 15336770 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC-ATCAAGAAGAAGGCGGACTG 42658 || | | || ||| | ||||| || || | |||| | || ||||| || || Sbjct 15336771 AGTCTC-GCCTCTTCCATGCCATTGACACCGT-CCCTCCTGTCGCCCGCAAGGCCGAGTG 15336828 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 |||||| ||||||||| | | | || |||| |||| | || || ||||| | Sbjct 15336829 GGCGCTACGCTGGATCGAATCCTCTGTCTCA---TTCGCCGAGCGCCTCGTTGCCTTCGC 15336885 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 | ||||||||| |||||||||| ||| ||||| | ||||||||||||||||| || Sbjct 15336886 CTGCGTCGAGGGAGTCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCG 15336945 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| || ||||| || ||||||||||| ||||| |||||| | | |||||||| || | Sbjct 15336946 AGGCCTC-ATGCCGGGTCTCACCTTCTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCC 15337004 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | ||||| |||||||||| ||| || | || | |||||| ||| || | | Sbjct 15337005 ACTGCGACTTCGCCTGCCTCC---TCTACAGTCTTCTTCGCAACAAGCTCTCCGAGTACC 15337061 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT-CG 42956 | ||||| | ||| | | || ||||| || |||||| ||| ||| || ||| | | Sbjct 15337062 GTGTCCGTGAAATCGTTGCCGATGCCGTTGACATCGAGCGGGAATTCGTC-TGCAATGCC 15337120 Query 42957 CTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTC 43016 ||||| || |||| ||||| ||||| |||||||||| | |||| ||| ||| ||| Sbjct 15337121 CTGCCGGTCGCCCTTGTCGGGATGAATGGCGACCTCATGAGTCAGTATATCGAGTTCGTG 15337180 Query 43017 GCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 ||||||| || || | | | ||| | | ||| || | ||||||| Sbjct 15337181 GCCGACCGCCTGCTTGGAGCGCTAGGTTACGAAAAGTTGTACGGGGCGGCCAACCCCTTC 15337240 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| ||||||| || |||| ||||| ||||| ||||||||| | |||| | Sbjct 15337241 GACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGC 15337300 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 15337301 GACTACCAG 15337309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944253513021840