Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq9 96.9 3e-15 seq1 84.2 2e-11 >seq8 Length=35439739 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || || | ||||||||||||||| ||| ||||||||||||||| || || || Sbjct 1222287 ACCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGC 1222346 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || || | |||||||||||||| || || | |||||| ||| || Sbjct 1222347 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGG 1222406 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | || ||| |||||| || || ||||| | | | || | || | ||| Sbjct 1222407 GATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCG-AGCTCTCGA 1222465 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| || || ||||||||||| ||||| Sbjct 1222466 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| |||||||||||| |||||| ||||||||| ||||||||||| || Sbjct 4858223 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4858164 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | || ||||| ||||| || || | ||||| ||| ||| Sbjct 4858163 AGAGTG-CGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGG 4858105 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 4858104 GATGCCCTCCTTGTCC 4858089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || |||||| |||||||||||||||||| || || | ||| Sbjct 26900818 AGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGG 26900877 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||| ||||| || || || |||||||||||| ||| | || ||| Sbjct 26900878 CCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCC 26900937 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 |||||| ||| || ||| | | ||| | | || | ||||| |||| || Sbjct 26900938 TTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGT 26900996 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || || || || ||||| ||||| ||||| || Sbjct 26900997 GATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 26901038 >seq9 Length=34148863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| ||| ||||||||||||||||||||||||| ||| Sbjct 33548978 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGC 33549037 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| || ||||| ||||| | |||||||||| || | | ||| Sbjct 33549038 CCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCC 33549097 Query 34030 TTGTCC 34035 |||||| Sbjct 33549098 TTGTCC 33549103 >seq1 Length=27573629 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| ||||| | ||| Sbjct 19376105 AGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGC 19376164 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||| ||||||||||| ||||||||||| ||| ||| | | ||| Sbjct 19376165 CCGTCCTCGAGCTGCTTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCC 19376224 Query 34030 TTGTCC 34035 |||||| Sbjct 19376225 TTGTCC 19376230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397027272261718