Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq8 100 2e-16
seq9 96.9 3e-15
seq1 84.2 2e-11
>seq8
Length=35439739
Score = 100 bits (110), Expect = 2e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| || || | ||||||||||||||| ||| ||||||||||||||| || || ||
Sbjct 1222287 ACCTCCCCTGAGTCTCAGCACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGC 1222346
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
||| || | || || | |||||||||||||| || || | |||||| ||| ||
Sbjct 1222347 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGG 1222406
Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078
| || ||| |||||| || || ||||| | | | || | || | |||
Sbjct 1222407 GATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCG-AGCTCTCGA 1222465
Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|||| || || || || ||||| || || ||||||||||| |||||
Sbjct 1222466 CCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCAT 1222514
Score = 95.1 bits (104), Expect = 1e-14
Identities = 104/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || |||| |||||||||||| |||||| ||||||||| ||||||||||| ||
Sbjct 4858223 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 4858164
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || |||| || | || ||||| ||||| || || | ||||| ||| |||
Sbjct 4858163 AGAGTG-CGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGG 4858105
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 4858104 GATGCCCTCCTTGTCC 4858089
Score = 87.8 bits (96), Expect = 1e-12
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || || || || || |||||| |||||||||||||||||| || || | |||
Sbjct 26900818 AGGCGGAGGACGAGGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGG 26900877
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || |||| ||||| ||||| || || || |||||||||||| ||| | || |||
Sbjct 26900878 CCATCCTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCC 26900937
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088
|||||| ||| || ||| | | ||| | | || | ||||| |||| ||
Sbjct 26900938 TTGTCCTGAATCTTGGCCTTCA-CGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGT 26900996
Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130
|| || || || || || || ||||| ||||| ||||| ||
Sbjct 26900997 GATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCATCTT 26901038
>seq9
Length=34148863
Score = 96.9 bits (106), Expect = 3e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || |||||||| ||||| ||| ||||||||||||||||||||||||| |||
Sbjct 33548978 AGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGC 33549037
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| |||| ||||| || ||||| ||||| | |||||||||| || | | |||
Sbjct 33549038 CCGTCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCC 33549097
Query 34030 TTGTCC 34035
||||||
Sbjct 33549098 TTGTCC 33549103
>seq1
Length=27573629
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || || || || || || ||| ||||||||| |||||||| ||||| | |||
Sbjct 19376105 AGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGC 19376164
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| || | ||||| ||||||||||| ||||||||||| ||| ||| | | |||
Sbjct 19376165 CCGTCCTCGAGCTGCTTCCCGGCAAATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCC 19376224
Query 34030 TTGTCC 34035
||||||
Sbjct 19376225 TTGTCC 19376230
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397027272261718
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |