Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq9 131 4e-25
seq6 127 5e-24
>seq9
Length=34148863
Score = 131 bits (144), Expect = 4e-25
Identities = 292/436 (67%), Gaps = 2/436 (0%)
Strand=Plus/Plus
Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345
|| || || ||||| ||||| |||| | ||||| || || || | || |||||
Sbjct 33079400 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCC 33079459
Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405
|||||||| ||||| ||||| ||| || | ||||| |||||| | || |||
Sbjct 33079460 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 33079519
Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465
|| ||||| |||||||||||||| ||| | |||| || | ||
Sbjct 33079520 GAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAGCCTC 33079579
Query 243466 CTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525
|||| |||||||| | ||| ||||| |||| | | || || ||||| | |
Sbjct 33079580 CTCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATC 33079639
Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG-CTTATTGGCATGAACTCTGAACT 243584
|| ||| ||| | |||||||| | ||| || || || | || |||||| ||| ||
Sbjct 33079640 GAGCGGGAGTTCGTCTGCGACGC-ACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCT 33079698
Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644
|||| | ||||||||||| ||||| ||||||||| | || ||||| || | | ||
Sbjct 33079699 CATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAA 33079758
Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704
||||| | |||||||| | || ||||||||||| ||||| || || || |
Sbjct 33079759 GATGTACCGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGC 33079818
Query 243705 TAACTTCTTCGAAAAG 243720
||||||||||| |||
Sbjct 33079819 CAACTTCTTCGAGAAG 33079834
>seq6
Length=34899179
Score = 127 bits (140), Expect = 5e-24
Identities = 302/455 (66%), Gaps = 6/455 (1%)
Strand=Plus/Plus
Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345
|| || || ||||| |||||||||| | ||||| || || || | || |||||
Sbjct 4328575 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 4328634
Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405
|||||||||||||| ||||| ||| || | ||||| || ||| | || |||
Sbjct 4328635 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 4328694
Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465
||| ||||| || ||||||||||||||| | || | | || | ||
Sbjct 4328695 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGCTTGCCTCCTTTACGGCCTC 4328754
Query 243466 CTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525
|||| |||||||| | || | |||| ||| | | || || ||||| | |
Sbjct 4328755 CTCCGCAACAAGCTCTCCGAGGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATC 4328814
Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585
|| ||| ||| | |||||||| | || | ||| | || ||||| || |||
Sbjct 4328815 GAGCGGGAGTTCGTCTGCGACGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTC 4328874
Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645
||| | ||||||||||| || || ||||||||| | || ||||| || || | |||
Sbjct 4328875 ATGAGCCAGTACATCGAGTTTGTCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAA 4328934
Query 243646 GTGTAC---AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702
||||| |||| ||||| || | || ||||| ||||| ||||| || |||||
Sbjct 4328935 ATGTACGGGGTCTCC---AACCCTTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAG 4328991
Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
|| ||||||||||| || | ||| |||| || ||
Sbjct 4328992 ACCAACTTCTTCGAGAAAAGGGTCGGTGAGTACCA 4329026
Score = 123 bits (136), Expect = 5e-23
Identities = 314/472 (67%), Gaps = 8/472 (2%)
Strand=Plus/Plus
Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345
||||| || ||||| ||||| |||| | ||||| || || | | || |||||
Sbjct 15336857 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCC 15336916
Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405
|||||||||||||| ||||| ||| ||| | ||||| || ||| | || |||
Sbjct 15336917 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976
Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465
||| ||||| || ||||||||||| ||| | |||| || | ||
Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAGTCTT 15337036
Query 243466 CTCCAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATCATCACAGAAGCAGTTGAA 243522
|| | |||||||| | ||| | || ||| ||||| | | || || |||||
Sbjct 15337037 CTTCGCAACAAGCTCTC---CGAGTACCGTGTCCGTGAAATCGTTGCCGATGCCGTTGAC 15337093
Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582
| ||| ||||||| | ||| | || | || | ||| | || ||||| ||
Sbjct 15337094 ATCGAGCGGGAATTCGTCTGCAATGCCCTGCCGGTCGCCCTTGTCGGGATGAATGGCGAC 15337153
Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642
|||||| | ||||| ||||| ||||| ||||||||| | | ||||| ||||| ||
Sbjct 15337154 CTCATGAGTCAGTATATCGAGTTCGTGGCCGACCGCCTGCTTGGAGCGCTAGGTTACGAA 15337213
Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702
|| ||||| | |||||||| | || ||||||||||| ||||| || |||||
Sbjct 15337214 AAGTTGTACGGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAG 15337273
Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753
|| ||||||||||| ||| | ||| | || || || | | ||| | ||||||
Sbjct 15337274 ACAAACTTCTTCGAGAAGAGGGTCGGCGACTACCAGAAGGCCTCG-GTGATG 15337324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102777425611650
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