Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 131 4e-25 seq6 127 5e-24 >seq9 Length=34148863 Score = 131 bits (144), Expect = 4e-25 Identities = 292/436 (67%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| ||||| |||| | ||||| || || || | || ||||| Sbjct 33079400 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCC 33079459 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||| ||||| ||||| ||| || | ||||| |||||| | || ||| Sbjct 33079460 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 33079519 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 || ||||| |||||||||||||| ||| | |||| || | || Sbjct 33079520 GAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAGCCTC 33079579 Query 243466 CTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 |||| |||||||| | ||| ||||| |||| | | || || ||||| | | Sbjct 33079580 CTCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATC 33079639 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG-CTTATTGGCATGAACTCTGAACT 243584 || ||| ||| | |||||||| | ||| || || || | || |||||| ||| || Sbjct 33079640 GAGCGGGAGTTCGTCTGCGACGC-ACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCT 33079698 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 |||| | ||||||||||| ||||| ||||||||| | || ||||| || | | || Sbjct 33079699 CATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAA 33079758 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 ||||| | |||||||| | || ||||||||||| ||||| || || || | Sbjct 33079759 GATGTACCGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGC 33079818 Query 243705 TAACTTCTTCGAAAAG 243720 ||||||||||| ||| Sbjct 33079819 CAACTTCTTCGAGAAG 33079834 >seq6 Length=34899179 Score = 127 bits (140), Expect = 5e-24 Identities = 302/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| |||||||||| | ||||| || || || | || ||||| Sbjct 4328575 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 4328634 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| || | ||||| || ||| | || ||| Sbjct 4328635 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 4328694 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || ||||||||||||||| | || | | || | || Sbjct 4328695 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGCTTGCCTCCTTTACGGCCTC 4328754 Query 243466 CTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 |||| |||||||| | || | |||| ||| | | || || ||||| | | Sbjct 4328755 CTCCGCAACAAGCTCTCCGAGGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATC 4328814 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || ||| ||| | |||||||| | || | ||| | || ||||| || ||| Sbjct 4328815 GAGCGGGAGTTCGTCTGCGACGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTC 4328874 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| || || ||||||||| | || ||||| || || | ||| Sbjct 4328875 ATGAGCCAGTACATCGAGTTTGTCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAA 4328934 Query 243646 GTGTAC---AACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 ||||| |||| ||||| || | || ||||| ||||| ||||| || ||||| Sbjct 4328935 ATGTACGGGGTCTCC---AACCCTTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAG 4328991 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||||||||| || | ||| |||| || || Sbjct 4328992 ACCAACTTCTTCGAGAAAAGGGTCGGTGAGTACCA 4329026 Score = 123 bits (136), Expect = 5e-23 Identities = 314/472 (67%), Gaps = 8/472 (2%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 ||||| || ||||| ||||| |||| | ||||| || || | | || ||||| Sbjct 15336857 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCC 15336916 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| ||| | ||||| || ||| | || ||| Sbjct 15336917 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || ||||||||||| ||| | |||| || | || Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACAGTCTT 15337036 Query 243466 CTCCAGAACAAGCTACCATTCGA--AACG-GTCAAACAAATCATCACAGAAGCAGTTGAA 243522 || | |||||||| | ||| | || ||| ||||| | | || || ||||| Sbjct 15337037 CTTCGCAACAAGCTCTC---CGAGTACCGTGTCCGTGAAATCGTTGCCGATGCCGTTGAC 15337093 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | ||| ||||||| | ||| | || | || | ||| | || ||||| || Sbjct 15337094 ATCGAGCGGGAATTCGTCTGCAATGCCCTGCCGGTCGCCCTTGTCGGGATGAATGGCGAC 15337153 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||| ||||| ||||| ||||||||| | | ||||| ||||| || Sbjct 15337154 CTCATGAGTCAGTATATCGAGTTCGTGGCCGACCGCCTGCTTGGAGCGCTAGGTTACGAA 15337213 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || ||||| | |||||||| | || ||||||||||| ||||| || ||||| Sbjct 15337214 AAGTTGTACGGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAG 15337273 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACGCCCTGGTGTGATG 243753 || ||||||||||| ||| | ||| | || || || | | ||| | |||||| Sbjct 15337274 ACAAACTTCTTCGAGAAGAGGGTCGGCGACTACCAGAAGGCCTCG-GTGATG 15337324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102777425611650