Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq9 149 7e-31
seq6 138 1e-27
seq4 93.3 5e-14
>seq9
Length=34148863
Score = 149 bits (164), Expect = 7e-31
Identities = 244/344 (71%), Gaps = 6/344 (2%)
Strand=Plus/Minus
Query 125869 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 125928
||| || || || | ||| |||| ||||||| ||| ||| |||||| ||||
Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679
Query 125929 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCA 125987
||| | ||| ||||| ||||| ||| |||| || ||| || || || || ||| |
Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620
Query 125988 CGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCAC 126045
|||| || | | | ||| | ||| | | ||||| | || || | ||||
Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 33079562
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
||| || || |||||| |||||||| |||||||||||||| || |||||| || ||
Sbjct 33079561 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 33079502
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
|||||||| || || ||||| | |||||| || || || || ||||| |||||||||||
Sbjct 33079501 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGAT 33079442
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209
||||| || || ||||| |||| ||| ||||| || |||||||
Sbjct 33079441 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 33079398
Score = 134 bits (148), Expect = 2e-26
Identities = 168/230 (73%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118
|| || ||||||||||||||||| || || ||||||||| || || |||||||| ||
Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918
Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178
|||||||| | ||| || || || || || || || ||||||||||||||||| |||||
Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858
Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238
||||| || | | ||||| ||||| |||| || | |||| ||| || |||
Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA---AGATTCAATCCAGCGCAGGGCC 1096801
Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288
|| | |||||| ||| | | ||||| |||| ||| ||| |||||
Sbjct 1096800 CAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAG 1096751
Score = 100 bits (110), Expect = 3e-16
Identities = 190/278 (68%), Gaps = 4/278 (1%)
Strand=Plus/Minus
Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934
|| ||||||||||| |||||||| ||||||||||| || || | ||||| || | | |
Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959
Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994
|| | || || | | ||| | || || || ||||||||||||||||| || || |
Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901
Query 10995 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054
| ||| || | || || || | ||| ||||| ||| || || |||||||
Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCA 28871841
Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114
| |||| ||||| || | || || | || || |||||| ||| || || ||||
Sbjct 28871840 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 28871781
Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152
| | |||||||| || || || || || || || |||
Sbjct 28871780 CCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGT 28871743
>seq6
Length=34899179
Score = 138 bits (152), Expect = 1e-27
Identities = 121/151 (80%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117
|||||| |||||||||||||||||||| || || |||||| || || |||||||| ||
Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947
Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177
|||||||| | |||||| || || || || || || |||||||||| |||||| || ||
Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887
Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208
||||| |||| ||| ||||| || || |||
Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856
Score = 132 bits (146), Expect = 6e-26
Identities = 127/163 (78%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106
||||| || ||| || |||||||||||||||||||| || || |||||| || ||
Sbjct 4328735 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 4328676
Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166
|||||||| || |||||||| | |||||| || || || || || || ||||| |||||
Sbjct 4328675 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 4328616
Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209
||||| || || ||||| || | ||| ||||| || |||||||
Sbjct 4328615 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGC 4328573
>seq4
Length=30051516
Score = 93.3 bits (102), Expect = 5e-14
Identities = 188/277 (68%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934
|| ||||||||||| |||||||| |||||||| || || || | |||||||| | | |
Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757
Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994
|| | || || | | ||| | || || || |||||||||||||||||||| || |
Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815
Query 10995 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054
||||| || | || ||||| | ||| ||||| ||| || || || ||||
Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875
Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114
|||| | ||||| || | || || | ||| || ||| ||||| || || || |
Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935
Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
| | || | || || || ||||| || || || ||
Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGG 3938972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597299397627720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |