Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9 149 7e-31 seq6 138 1e-27 seq4 93.3 5e-14 >seq9 Length=34148863 Score = 149 bits (164), Expect = 7e-31 Identities = 244/344 (71%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 125869 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 125928 ||| || || || | ||| |||| ||||||| ||| ||| |||||| |||| Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679 Query 125929 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCA 125987 ||| | ||| ||||| ||||| ||| |||| || ||| || || || || ||| | Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620 Query 125988 CGATGGCGTGAATGGTGTCCACCC-CAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCAC 126045 |||| || | | | ||| | ||| | | ||||| | || || | |||| Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 33079562 Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||| || || |||||| |||||||| |||||||||||||| || |||||| || || Sbjct 33079561 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 33079502 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || || ||||| | |||||| || || || || ||||| ||||||||||| Sbjct 33079501 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGAT 33079442 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| || || ||||| |||| ||| ||||| || ||||||| Sbjct 33079441 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 33079398 Score = 134 bits (148), Expect = 2e-26 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || ||||||||||||||||| || || ||||||||| || || |||||||| || Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 |||||||| | ||| || || || || || || || ||||||||||||||||| ||||| Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 ||||| || | | ||||| ||||| |||| || | |||| ||| || ||| Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA---AGATTCAATCCAGCGCAGGGCC 1096801 Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 126288 || | |||||| ||| | | ||||| |||| ||| ||| ||||| Sbjct 1096800 CAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAG 1096751 Score = 100 bits (110), Expect = 3e-16 Identities = 190/278 (68%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || ||||||||||| |||||||| ||||||||||| || || | ||||| || | | | Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | || || | | ||| | || || || ||||||||||||||||| || || | Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901 Query 10995 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 | ||| || | || || || | ||| ||||| ||| || || ||||||| Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCA 28871841 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 | |||| ||||| || | || || | || || |||||| ||| || || |||| Sbjct 28871840 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 28871781 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 | | |||||||| || || || || || || || ||| Sbjct 28871780 CCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGT 28871743 >seq6 Length=34899179 Score = 138 bits (152), Expect = 1e-27 Identities = 121/151 (80%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||||||||||||||| || || |||||| || || |||||||| || Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || || || || || || |||||||||| |||||| || || Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||||| |||| ||| ||||| || || ||| Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856 Score = 132 bits (146), Expect = 6e-26 Identities = 127/163 (78%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| || |||||||||||||||||||| || || |||||| || || Sbjct 4328735 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 4328676 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || |||||||| | |||||| || || || || || || ||||| ||||| Sbjct 4328675 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 4328616 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| || || ||||| || | ||| ||||| || ||||||| Sbjct 4328615 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGC 4328573 >seq4 Length=30051516 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 10877 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGG 10934 || ||||||||||| |||||||| |||||||| || || || | |||||||| | | | Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | || || | | ||| | || || || |||||||||||||||||||| || | Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815 Query 10995 ACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 ||||| || | || ||||| | ||| ||||| ||| || || || |||| Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||| | ||||| || | || || | ||| || ||| ||||| || || || | Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | || | || || || ||||| || || || || Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGG 3938972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597299397627720