Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 122 9e-23 seq8 114 1e-20 seq1 111 2e-19 seq4576 107 2e-18 seq11 107 2e-18 seq3 107 2e-18 seq1007 87.8 2e-12 seq6 86.0 7e-12 >seq9 Length=34148863 Score = 122 bits (134), Expect = 9e-23 Identities = 172/238 (72%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034 ||| ||||| || | | || | ||||| || | ||| ||||| ||||| ||||| Sbjct 33541442 TTAGCGACCACCGCGGAGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTA 33541383 Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094 ||| ||||| || || |||| ||||||||||| |||||||| ||||| | |||||| || Sbjct 33541382 ATCTGCCAGGGTGCGGCCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATC 33541323 Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GC 42150 | ||| | | |||||||||| ||| || |||| ||| | | | |||||| || Sbjct 33541322 CGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGC 33541264 Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 33541263 TC---TCCACCTCCAAGGTAATGGTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCAT 33541209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || | || | | ||||| Sbjct 11332000 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGATCTCC----CCGCGAA 11332055 Query 42077 TATGAGTCGCTGCTGGTC-GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135 |||| ||| ||||||| |||||| | | ||||| ||| ||| || || | || Sbjct 11332056 GATGATACGCGGCTGGTCCGGCTGG-ATGTCCTCCTCCTCCTGGATCTTAGCCTTCA-CG 11332113 Query 42136 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | | | |||||| ||| ||||| |||| ||||| || |||||||| || ||||| Sbjct 11332114 TTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTC 11332173 Query 42195 ACAAAGATTTGCATTTT 42211 |||||||||||||| || Sbjct 11332174 ACAAAGATTTGCATCTT 11332190 >seq8 Length=35439739 Score = 114 bits (126), Expect = 1e-20 Identities = 156/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||| || | ||| |||||| |||||||||||||| ||||| || || |||| || Sbjct 1222077 CACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTC 1222136 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 |||||||| ||||| || || || | ||||||||| | ||| | | |||||||||| | Sbjct 1222137 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC-T 1222195 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 | | |||| | | ||| | | | |||||| |||| || || || | ||||||| Sbjct 1222196 GGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTC---TCAACCTCCAGGGTGATGG 1222252 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || ||||| || ||||| ||||| Sbjct 1222253 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| || || || |||| || || |||| || ||||||||||||||||| Sbjct 1223266 CTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 1223325 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | ||||||||||| || | | ||||||||| ||| || || | | Sbjct 1223326 GATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 1223385 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||| || || | |||||||| ||||| || || || || || Sbjct 1223386 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1223445 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 1223446 GAAGATCTGCAT 1223457 >seq1 Length=27573629 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || |||||||| || || || Sbjct 19376131 CTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAA 19376190 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 |||||| ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 19376191 TATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 19376249 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || ||||| |||| ||||| || || || || || ||||| | Sbjct 19376250 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCA 19376309 Query 42196 CAAAGATTTGCATTTTCACGCCG 42218 | ||||| ||||| ||| || || Sbjct 19376310 CGAAGATCTGCATCTTCCCGGCG 19376332 >seq4576 Length=2771 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || || ||||| || || || || || | || || |||||||| || ||||| Sbjct 2682 CTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 2623 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| | |||||||||| || | || ||| |||||| ||| || ||||| ||| Sbjct 2622 AATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCTTTGA-CGT 2564 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || |||| ||||||||||| || || |||||||| | Sbjct 2563 TGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGTGAGCGTCTTAA 2504 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 2503 CAAAGATCTGCAT 2491 >seq11 Length=25514024 Score = 107 bits (118), Expect = 2e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || || || |||| || |||||||| || ||||| Sbjct 15140746 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 15140805 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 15140806 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15140864 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| ||||| || | ||||| || || ||||| | ||||| | Sbjct 15140865 TGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCA 15140924 Query 42196 CAAAGATTTGCATTTTCACGCCG 42218 | ||||| ||||| ||||| || Sbjct 15140925 CGAAGATCTGCATACTCACGGCG 15140947 >seq3 Length=30470407 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || || || ||| | || || |||||||| || || || Sbjct 5991010 CTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCGGCAAA 5991069 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || |||||| ||| ||| || || | ||| Sbjct 5991070 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGT 5991128 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| ||| ||||| |||| ||||| || || ||||| || ||||| | Sbjct 5991129 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTCTTCA 5991188 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 5991189 CGAAGATCTGCATCTT 5991204 >seq1007 Length=1704909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 32336 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 32395 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| || | | ||||||||| ||| || |||| ||| Sbjct 32396 GATGAGCCGCTGCTGGTCCTGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 32454 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | | ||| || ||||| |||| || || || || || || || ||||| | Sbjct 32455 TGTCGATGGCGTCCGATGACTCCACCTCGAGGGTAATCGTCTTCCCGGTGAGGGTCTTCA 32514 Query 42196 CAAAGATTTGCATTTTCACGCC 42217 | ||||| ||||| || |||| Sbjct 32515 CGAAGATCTGCATCTTTCCGCC 32536 >seq6 Length=34899179 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || ||||| ||||| || || || | || || || ||||| ||||| || Sbjct 13144354 CTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 13144295 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||| | | |||||||| | || | | |||||| ||| ||| || ||||| | Sbjct 13144294 TATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATT 13144235 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||||| ||||| || || | ||||| || || || || || || || || Sbjct 13144234 GTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTTGAC 13144175 Query 42197 AAAGATTTGCAT 42208 |||||||||||| Sbjct 13144174 AAAGATTTGCAT 13144163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543163510228560