Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq9 122 9e-23
seq8 114 1e-20
seq1 111 2e-19
seq4576 107 2e-18
seq11 107 2e-18
seq3 107 2e-18
seq1007 87.8 2e-12
seq6 86.0 7e-12
>seq9
Length=34148863
Score = 122 bits (134), Expect = 9e-23
Identities = 172/238 (72%), Gaps = 8/238 (3%)
Strand=Plus/Minus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
||| ||||| || | | || | ||||| || | ||| ||||| ||||| |||||
Sbjct 33541442 TTAGCGACCACCGCGGAGGCGGAGCACCAGGTGAAGGGTGGATTCCTTCTGAATGTTGTA 33541383
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
||| ||||| || || |||| ||||||||||| |||||||| ||||| | |||||| ||
Sbjct 33541382 ATCTGCCAGGGTGCGGCCGTCCTCTAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATC 33541323
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GC 42150
| ||| | | |||||||||| ||| || |||| ||| | | | |||||| ||
Sbjct 33541322 CGGTGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCCGAGC 33541264
Query 42151 TCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| ||||| || | || ||||| || || || || ||||| |||||||| |||||
Sbjct 33541263 TC---TCCACCTCCAAGGTAATGGTCTTCCCGGTGAGGGTCTTAACAAAGATCTGCAT 33541209
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/197 (72%), Gaps = 8/197 (4%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || | || | | |||||
Sbjct 11332000 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCGATCTCC----CCGCGAA 11332055
Query 42077 TATGAGTCGCTGCTGGTC-GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 42135
|||| ||| ||||||| |||||| | | ||||| ||| ||| || || | ||
Sbjct 11332056 GATGATACGCGGCTGGTCCGGCTGG-ATGTCCTCCTCCTCCTGGATCTTAGCCTTCA-CG 11332113
Query 42136 TCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | |||||| ||| ||||| |||| ||||| || |||||||| || |||||
Sbjct 11332114 TTGTCGATCGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTC 11332173
Query 42195 ACAAAGATTTGCATTTT 42211
|||||||||||||| ||
Sbjct 11332174 ACAAAGATTTGCATCTT 11332190
>seq8
Length=35439739
Score = 114 bits (126), Expect = 1e-20
Identities = 156/214 (73%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| || | ||| |||||| |||||||||||||| ||||| || || |||| ||
Sbjct 1222077 CACCAGGTGAAGAGTGGACTCCTTCTGAATATTGTAATCGGCCAGGGTGCGACCGTCCTC 1222136
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| ||||| || || || | ||||||||| | ||| | | |||||||||| |
Sbjct 1222137 GAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCC-T 1222195
Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174
| | |||| | | ||| | | | |||||| |||| || || || | |||||||
Sbjct 1222196 GGATCTTTGCCTTAACGTTGTCGATCGTGTCAGAGCTC---TCAACCTCCAGGGTGATGG 1222252
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || || || || ||||| || ||||| |||||
Sbjct 1222253 TCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 1222286
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| || || || |||| || || |||| || |||||||||||||||||
Sbjct 1223266 CTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCAGCGAA 1223325
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| | ||||||||||| || | | ||||||||| ||| || || | |
Sbjct 1223326 GATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTAACATT 1223385
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | |||||| ||||| || || | |||||||| ||||| || || || || ||
Sbjct 1223386 GTCGATGGTGTCGGAGGATTCAACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1223445
Query 42197 AAAGATTTGCAT 42208
||||| |||||
Sbjct 1223446 GAAGATCTGCAT 1223457
>seq1
Length=27573629
Score = 111 bits (122), Expect = 2e-19
Identities = 148/203 (73%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || ||| |||| || |||||||| || || ||
Sbjct 19376131 CTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCAAA 19376190
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
|||||| ||||||||||| | || | | |||||||||| ||| || |||| |||
Sbjct 19376191 TATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGA-CGT 19376249
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || ||||| |||| ||||| || || || || || ||||| |
Sbjct 19376250 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCA 19376309
Query 42196 CAAAGATTTGCATTTTCACGCCG 42218
| ||||| ||||| ||| || ||
Sbjct 19376310 CGAAGATCTGCATCTTCCCGGCG 19376332
>seq4576
Length=2771
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || ||||| || || || || || | || || |||||||| || |||||
Sbjct 2682 CTCTTTCTGGATGTTGTAGTCCGCAAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 2623
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| | |||||||||| || | || ||| |||||| ||| || ||||| |||
Sbjct 2622 AATGAGCCTTTGCTGGTCGGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCTTTGA-CGT 2564
Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| ||| || |||| ||||||||||| || || |||||||| |
Sbjct 2563 TGTCGATGGTGTCGGAGCTTTCGACCTCGAGGGTGATGGTTTTTCCAGTGAGCGTCTTAA 2504
Query 42196 CAAAGATTTGCAT 42208
||||||| |||||
Sbjct 2503 CAAAGATCTGCAT 2491
>seq11
Length=25514024
Score = 107 bits (118), Expect = 2e-18
Identities = 147/203 (72%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || || || || || || || || |||| || |||||||| || |||||
Sbjct 15140746 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAA 15140805
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | || |||||||||| ||| || || | |||
Sbjct 15140806 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 15140864
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| ||| ||||| || | ||||| || || ||||| | ||||| |
Sbjct 15140865 TGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTCA 15140924
Query 42196 CAAAGATTTGCATTTTCACGCCG 42218
| ||||| ||||| ||||| ||
Sbjct 15140925 CGAAGATCTGCATACTCACGGCG 15140947
>seq3
Length=30470407
Score = 107 bits (118), Expect = 2e-18
Identities = 143/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || |||||||| || || || || ||| | || || |||||||| || || ||
Sbjct 5991010 CTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCGGCAAA 5991069
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | || |||||| ||| ||| || || | |||
Sbjct 5991070 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGT 5991128
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| ||| ||||| |||| ||||| || || ||||| || ||||| |
Sbjct 5991129 TGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTCTTCA 5991188
Query 42196 CAAAGATTTGCATTTT 42211
| ||||| ||||| ||
Sbjct 5991189 CGAAGATCTGCATCTT 5991204
>seq1007
Length=1704909
Score = 87.8 bits (96), Expect = 2e-12
Identities = 142/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||| || |||||
Sbjct 32336 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 32395
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| || | | ||||||||| ||| || |||| |||
Sbjct 32396 GATGAGCCGCTGCTGGTCCTGAGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 32454
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | | ||| || ||||| |||| || || || || || || || ||||| |
Sbjct 32455 TGTCGATGGCGTCCGATGACTCCACCTCGAGGGTAATCGTCTTCCCGGTGAGGGTCTTCA 32514
Query 42196 CAAAGATTTGCATTTTCACGCC 42217
| ||||| ||||| || ||||
Sbjct 32515 CGAAGATCTGCATCTTTCCGCC 32536
>seq6
Length=34899179
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||||||||| || ||||| ||||| || || || | || || || ||||| ||||| ||
Sbjct 13144354 CTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAA 13144295
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||| | | |||||||| | || | | |||||| ||| ||| || ||||| |
Sbjct 13144294 TATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATT 13144235
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| ||||| || || | ||||| || || || || || || || ||
Sbjct 13144234 GTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTTGAC 13144175
Query 42197 AAAGATTTGCAT 42208
||||||||||||
Sbjct 13144174 AAAGATTTGCAT 13144163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543163510228560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |