Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq9 102 8e-17
seq1007 100 3e-16
seq1 98.7 1e-15
seq8 96.9 3e-15
seq3 93.3 4e-14
seq11 89.7 5e-13
seq6 84.2 2e-11
>seq9
Length=34148863
Score = 102 bits (112), Expect = 8e-17
Identities = 293/448 (65%), Gaps = 7/448 (2%)
Strand=Plus/Plus
Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451
||||||||| | || ||||||||| ||||||||| | || || ||||| ||| |
Sbjct 33079406 GCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGC 33079465
Query 52452 GCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGT 52509
|| ||||| | | || |||| ||| | ||||||||||| || ||| ||||||
Sbjct 33079466 GCTATCTTCTGGCTCAAGAAACGC--GGCCTCATGCCCGGCCTCACCTTCTCCAACGAAC 33079523
Query 52510 TGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCG 52569
| || || |||||||| || || ||| ||||| || |||||| |||| | | |
Sbjct 33079524 TCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC---AGCCTCC 33079580
Query 52570 TGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCG 52629
| | | || || ||| || ||| | || | ||| || || | ||||
Sbjct 33079581 TCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCG 33079640
Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689
| |||||| | | ||| || || |||| || | || ||||||| | ||
Sbjct 33079641 AGCGGGAGTTCGTCTGCGACGCACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCA 33079700
Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749
|| || ||||||||||||| ||||| || || ||| | | | ||| || || |||
Sbjct 33079701 TGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGA 33079760
Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809
| | || ||| || || || | ||| | ||| ||||| |||| ||| |||
Sbjct 33079761 TGTACCGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCA 33079820
Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| ||||||||| | || ||||||||
Sbjct 33079821 ACTTCTTCGAGAAGAGGGTGGGCGAGTA 33079848
>seq1007
Length=1704909
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| || | || | || | | | |||||||| || ||||||||||||
Sbjct 32300 GCCGCCGCGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 32359
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||||||| || || |||| |||| || ||||| |||||| ||||
Sbjct 32360 GAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCTGAGG 32419
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || || | | || | || ||| | ||||||||
Sbjct 32420 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGCGTCCGATGACTCCAC 32479
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | ||| || || || || || || || || ||||||||
Sbjct 32480 CTCGAGGGTAATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 32527
>seq1
Length=27573629
Score = 98.7 bits (108), Expect = 1e-15
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || ||| ||||||||| || || |||| |
Sbjct 19376129 GACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCA 19376188
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
| || || ||||| |||||||| || || || || ||||| ||| || || |
Sbjct 19376189 AATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACG 19376248
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | ||||||||||||| || | ||| || || || || || ||
Sbjct 19376249 TTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTC 19376308
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 19376309 ACGAAGATCTGCAT 19376322
>seq8
Length=35439739
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| | || || ||||| || || || ||||
Sbjct 26900842 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCCGGCG 26900901
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| |||||||| || ||||| || || || || ||||| ||| | || | || |
Sbjct 26900902 AAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTTCAC 26900960
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | ||| |||||||||| || | ||| || || ||||| || |
Sbjct 26900961 GTTG-TCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGTCT 26901019
Query 138599 TTACAAAAATCTGCAT 138614
| || || ||||||||
Sbjct 26901020 TCACGAAGATCTGCAT 26901035
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| |||||||| |||||| || || || |||||||| || || |||| |
Sbjct 1222321 GACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 1222380
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || | ||| ||||||||||| || || || ||||| || | || | ||||
Sbjct 1222381 AAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTC-CTGGATCTTGGCCTTAAC 1222439
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||| | ||| ||||||| || | || || || || ||||| |
Sbjct 1222440 GTTG-TCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCT 1222498
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 1222499 TCACAAAGATCTGCAT 1222514
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||| | || || ||||||||| || || ||||
Sbjct 32122425 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCG 32122366
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| |||||||| || || ||||| ||||| ||| || || |
Sbjct 32122365 AAGATGAGCCTCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACG 32122306
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||| | ||||||||||||| || | || || || || || || ||
Sbjct 32122305 TTATCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTAAGGGTCTTC 32122246
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 32122245 ACGAAGATCTGCAT 32122232
>seq3
Length=30470407
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || || |||||||| | || ||| |||||||| || || |||| |
Sbjct 5991008 GACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCGGCA 5991067
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| ||||| || || || || || || || ||| || || |
Sbjct 5991068 AAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACG 5991127
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | |||||||||||||| || | ||| || || || ||||| ||
Sbjct 5991128 TTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTCTTC 5991187
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 5991188 ACGAAGATCTGCAT 5991201
>seq11
Length=25514024
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||| |||||| | || || |||||| || || || ||||
Sbjct 15140744 GACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCG 15140803
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| |||||||| || || || || ||||| ||| || || |
Sbjct 15140804 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 15140863
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||| | |||||||||||| | || | ||| || || |||| ||| ||
Sbjct 15140864 TTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTC 15140923
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 15140924 ACGAAGATCTGCAT 15140937
Score = 87.8 bits (96), Expect = 2e-12
Identities = 139/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | |||||| ||||||||| || || || | |
Sbjct 16241448 GACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGCTTGCCCGCA 16241507
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || | || |||||||| || || ||||| ||||| ||| | || | || |
Sbjct 16241508 AAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTTCAC 16241566
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | |||||| | ||| || |||| || | ||| || || || || || |
Sbjct 16241567 GTTG-TCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGTCT 16241625
Query 138599 TTACAAAAATCTGCAT 138614
| ||||| ||||||||
Sbjct 16241626 TCACAAAGATCTGCAT 16241641
>seq6
Length=34899179
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| ||||||||||| | || || ||||| ||||| || || | |
Sbjct 13144356 GACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCA 13144297
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
| || | | || |||||||| ||||| || || || || ||| || ||| | |
Sbjct 13144296 AATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACA 13144237
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||| | || || ||||| | || | ||| || ||||| ||||||||
Sbjct 13144236 TTG-TCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTT 13144178
Query 138600 TACAAAAATCTGCAT 138614
||||| || |||||
Sbjct 13144177 GACAAAGATTTGCAT 13144163
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496217370390480
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