Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 seq1007 100 3e-16 seq1 98.7 1e-15 seq8 96.9 3e-15 seq3 93.3 4e-14 seq11 89.7 5e-13 seq6 84.2 2e-11 >seq9 Length=34148863 Score = 102 bits (112), Expect = 8e-17 Identities = 293/448 (65%), Gaps = 7/448 (2%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 ||||||||| | || ||||||||| ||||||||| | || || ||||| ||| | Sbjct 33079406 GCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGC 33079465 Query 52452 GCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGT 52509 || ||||| | | || |||| ||| | ||||||||||| || ||| |||||| Sbjct 33079466 GCTATCTTCTGGCTCAAGAAACGC--GGCCTCATGCCCGGCCTCACCTTCTCCAACGAAC 33079523 Query 52510 TGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCG 52569 | || || |||||||| || || ||| ||||| || |||||| |||| | | | Sbjct 33079524 TCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC---AGCCTCC 33079580 Query 52570 TGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCG 52629 | | | || || ||| || ||| | || | ||| || || | |||| Sbjct 33079581 TCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCG 33079640 Query 52630 AAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCA 52689 | |||||| | | ||| || || |||| || | || ||||||| | || Sbjct 33079641 AGCGGGAGTTCGTCTGCGACGCACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCA 33079700 Query 52690 TGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGT 52749 || || ||||||||||||| ||||| || || ||| | | | ||| || || ||| Sbjct 33079701 TGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGA 33079760 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | | || ||| || || || | ||| | ||| ||||| |||| ||| ||| Sbjct 33079761 TGTACCGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCA 33079820 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| ||||||||| | || |||||||| Sbjct 33079821 ACTTCTTCGAGAAGAGGGTGGGCGAGTA 33079848 >seq1007 Length=1704909 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| || | || | || | | | |||||||| || |||||||||||| Sbjct 32300 GCCGCCGCGCAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 32359 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||||||| || || |||| |||| || ||||| |||||| |||| Sbjct 32360 GAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCTGAGG 32419 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | || ||| | |||||||| Sbjct 32420 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGCGTCCGATGACTCCAC 32479 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| || || || || || || || || |||||||| Sbjct 32480 CTCGAGGGTAATCGTCTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 32527 >seq1 Length=27573629 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || ||| ||||||||| || || |||| | Sbjct 19376129 GACTCCTTCTGGATGTTGTAGTCTGCGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCA 19376188 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 19376189 AATATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTGACG 19376248 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||||||||||| || | ||| || || || || || || Sbjct 19376249 TTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTC 19376308 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 19376309 ACGAAGATCTGCAT 19376322 >seq8 Length=35439739 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| | || || ||||| || || || |||| Sbjct 26900842 GACTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCCAGCTGCTTTCCGGCG 26900901 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| || ||||| || || || || ||||| ||| | || | || | Sbjct 26900902 AAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTC-CTGAATCTTGGCCTTCAC 26900960 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||| |||||||||| || | ||| || || ||||| || | Sbjct 26900961 GTTG-TCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGTCT 26901019 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 26901020 TCACGAAGATCTGCAT 26901035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| |||||| || || || |||||||| || || |||| | Sbjct 1222321 GACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 1222380 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||||||||| || || || ||||| || | || | |||| Sbjct 1222381 AAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTC-CTGGATCTTGGCCTTAAC 1222439 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||| ||||||| || | || || || || ||||| | Sbjct 1222440 GTTG-TCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCT 1222498 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 1222499 TCACAAAGATCTGCAT 1222514 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 32122425 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCG 32122366 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| |||||||| || || ||||| ||||| ||| || || | Sbjct 32122365 AAGATGAGCCTCTGCTGGTCCGGCGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACG 32122306 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | ||||||||||||| || | || || || || || || || Sbjct 32122305 TTATCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTAAGGGTCTTC 32122246 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 32122245 ACGAAGATCTGCAT 32122232 >seq3 Length=30470407 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | || ||| |||||||| || || |||| | Sbjct 5991008 GACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGCCCATCCTCGAGCTGCTTCCCGGCA 5991067 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| || || || || || || || ||| || || | Sbjct 5991068 AAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACG 5991127 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | |||||||||||||| || | ||| || || || ||||| || Sbjct 5991128 TTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGAGTCTTC 5991187 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 5991188 ACGAAGATCTGCAT 5991201 >seq11 Length=25514024 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| |||||| | || || |||||| || || || |||| Sbjct 15140744 GACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCG 15140803 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 15140804 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 15140863 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | |||||||||||| | || | ||| || || |||| ||| || Sbjct 15140864 TTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGATCGTCTTCCCCGTCAAAGTCTTC 15140923 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 15140924 ACGAAGATCTGCAT 15140937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||||||||| || || || | | Sbjct 16241448 GACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGCTTGCCCGCA 16241507 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | || |||||||| || || ||||| ||||| ||| | || | || | Sbjct 16241508 AAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTC-CTGAATCTTGGCCTTCAC 16241566 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||| || |||| || | ||| || || || || || | Sbjct 16241567 GTTG-TCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGTCT 16241625 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 16241626 TCACAAAGATCTGCAT 16241641 >seq6 Length=34899179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| | || || ||||| ||||| || || | | Sbjct 13144356 GACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCA 13144297 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || | | || |||||||| ||||| || || || || ||| || ||| | | Sbjct 13144296 AATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACA 13144237 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | || || ||||| | || | ||| || ||||| |||||||| Sbjct 13144236 TTG-TCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTT 13144178 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 13144177 GACAAAGATTTGCAT 13144163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496217370390480