Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq10 118 1e-21
seq6 96.9 3e-15
seq8 89.7 5e-13
seq11 84.2 2e-11
>seq10
Length=33665772
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| || || || || || ||||| |||||||| || ||
Sbjct 14516021 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCA 14516080
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| | ||| || |||||||| || || | || || | |||||||||||| |||
Sbjct 14516081 AGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGA 14516140
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| || ||||||||||||||||| ||| | || | || |||||||| || |||
Sbjct 14516141 ATACCCTCTTTATCTTGAATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACT 14516200
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || | || |||||||| ||||| || | || |||||||||
Sbjct 14516201 TCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAATGAATATTTGCATC 14516248
>seq6
Length=34899179
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || || || || || || ||||||||||| || || ||
Sbjct 13144392 ATGCCACCACGGAGGCGGAGTACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 13144333
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | ||| || || || ||||||| | ||||||||||||
Sbjct 13144332 GCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTTTGCTGGTCCGGG 13144273
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || ||||| || || || ||||| || | |||||| || || ||
Sbjct 13144272 GGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGGATTCA 13144213
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| || || || | ||| || || || |||||||| ||||| |||||||||
Sbjct 13144212 ACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATC 13144162
>seq8
Length=35439739
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | |||||||| ||| ||||| ||||| || ||||| ||||| || ||||||
Sbjct 4858226 ATCCCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCG 4858167
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || || | ||||| ||||| | || | | |||||||||||||
Sbjct 4858166 GCAAGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGC 4858107
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || || || || |||| || | || | ||||| || |||
Sbjct 4858106 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCCGAGCTCTC 4858048
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || | |||| || || || || ||||| || || || || |||||
Sbjct 4858047 GACCTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 4857997
>seq11
Length=25514024
Score = 84.2 bits (92), Expect = 2e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 45218 TTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGG 45276
|||||||||||| ||||||||||| || || ||||| || || | || | || | ||
Sbjct 16241519 TTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCGATGG 16241577
Query 45277 TGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTT 45336
|||| || |||||||||||| || | ||| || ||||| || || || ||||| || |
Sbjct 16241578 TGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGTCTTCACAAAGATCT 16241637
Query 45337 GCATC 45341
|||||
Sbjct 16241638 GCATC 16241642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451962186359640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |