Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-21 seq6 96.9 3e-15 seq8 89.7 5e-13 seq11 84.2 2e-11 >seq10 Length=33665772 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| |||||||| || || Sbjct 14516021 CCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCA 14516080 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || |||||||| || || | || || | |||||||||||| ||| Sbjct 14516081 AGGGTGCGACCATCCTCTAATTGTTTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGA 14516140 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||||||||||||||| ||| | || | || |||||||| || ||| Sbjct 14516141 ATACCCTCTTTATCTTGAATTTTAGCTTTCACATTATCAATAGTATCGGAAGATTCAACT 14516200 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || |||||||| ||||| || | || ||||||||| Sbjct 14516201 TCAAGGGTGATGGTCTTGCCGGTGAGAGTCTTAATGAATATTTGCATC 14516248 >seq6 Length=34899179 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||||||||| || || || Sbjct 13144392 ATGCCACCACGGAGGCGGAGTACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCA 13144333 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| || || || ||||||| | |||||||||||| Sbjct 13144332 GCAAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAATATCAACCTTTGCTGGTCCGGG 13144273 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || ||||| || || || ||||| || | |||||| || || || Sbjct 13144272 GGTATTCCCTCCTTATCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGGATTCA 13144213 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | ||| || || || |||||||| ||||| ||||||||| Sbjct 13144212 ACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTTTTGACAAAGATTTGCATC 13144162 >seq8 Length=35439739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||||| ||| ||||| ||||| || ||||| ||||| || |||||| Sbjct 4858226 ATCCCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCG 4858167 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||||| ||||| | || | | ||||||||||||| Sbjct 4858166 GCAAGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGC 4858107 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | ||||| || ||| Sbjct 4858106 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCCGAGCTCTC 4858048 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | |||| || || || || ||||| || || || || ||||| Sbjct 4858047 GACCTCCAAGGTAATGGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 4857997 >seq11 Length=25514024 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 45218 TTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGG 45276 |||||||||||| ||||||||||| || || ||||| || || | || | || | || Sbjct 16241519 TTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTGGCCTTCA-CGTTGTCGATGG 16241577 Query 45277 TGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTT 45336 |||| || |||||||||||| || | ||| || ||||| || || || ||||| || | Sbjct 16241578 TGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTGAGCGTCTTCACAAAGATCT 16241637 Query 45337 GCATC 45341 ||||| Sbjct 16241638 GCATC 16241642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451962186359640