Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_013085.1
Length=194454
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 181 1e-40
seq9 147 3e-30
seq1063 131 2e-25
seq4 131 2e-25
seq10 122 1e-22
seq11 104 3e-17
seq1042 98.7 1e-15
seq1024 93.3 5e-14
seq5 82.4 9e-11
>seq1382
Length=172696
Score = 181 bits (200), Expect = 1e-40
Identities = 249/342 (73%), Gaps = 17/342 (5%)
Strand=Plus/Minus
Query 7676 TTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGC 7735
||||||||||| ||||||||||||| ||| | ||| |||| |||||| |||| |||||||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 7736 CATGCTGCGAGGAA--GAAGTGCAG--CGAACGGGAGTTGTTGAACGAAGCGTATTGGAA 7791
|| ||||| | ||| | || || | || ||||||||||| ||| |||||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 7792 GATCAGACGACCAAAGTATCCGTGAGCAGCAACGA-----TGTTGTAGGTCT----CTTC 7842
||||| || | || || || |||||||| || | | ||||| |||| ||||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 7843 TTCTTGACCGAACTTATAACCATAGTTCTG-GGACTCAGACTCAGTGGTTTCACGAACCA 7901
|||||||||||| | ||||| | | || || || ||||||||||| | | ||
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 7902 GAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACC-- 7959
| ||||||||| | ||||||||||| |||||||| || || || || || |||||
Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539
Query 7960 AGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTG 8001
||| | || | ||||| || || ||||| |||||||||||
Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497
>seq9
Length=34148863
Score = 147 bits (162), Expect = 3e-30
Identities = 180/243 (74%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 7952 AAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 8011
|| ||||||| || || | |||||| | | ||||| ||||||||||| ||||| |
Sbjct 1507158 AATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAGA 1507099
Query 8012 AAGACAAG-CATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGA 8070
|| |||| |||| ||||||| | | ||| || || | ||||||| | |||||||||
Sbjct 1507098 AATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAACT 1507040
Query 8071 ACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTA 8130
|||||||| | ||| |||| | ||| ||||||| || || ||||| ||||| || ||
Sbjct 1507039 TCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1506980
Query 8131 TGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCAT 8190
||| ||| ||||| ||||||||||| ||| | || |||||| ||||| || | ||
Sbjct 1506979 TGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTCATACTCATGATCAAT 1506920
Query 8191 GTA 8193
|||
Sbjct 1506919 GTA 1506917
Score = 89.7 bits (98), Expect = 6e-13
Identities = 160/229 (70%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 10202 ATCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAA 10260
|||| || ||||| | ||||||| | | | | || || || | || | ||||| ||
Sbjct 33363356 ATCAATATAGTTCGCCTTCTTTGTGAGTGTAGATGACGCATTCTGATC-TCGGATAGGAG 33363414
Query 10261 ACACAGGTCAGAAGGAAACCAGCATCGA--TCTGGTCATCATCAAGGAACGATTGATCGC 10318
||||||||||| | |||| | |||| |||| ||||| ||||| ||| |||
Sbjct 33363415 ACACAGGTCAGGATATAACC--CTTCGACATCTGTGTTTCATCGAGGAAGGATCCATCCG 33363472
Query 10319 TTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGC 10378
||||| || | ||||| | | || || ||||| ||||||| || ||||||||||
Sbjct 33363473 ACTGATCGACATTGCCCGACACCAATTGACCAGCACACGTCGAACATGCTCCAGCTCGGC 33363532
Query 10379 ACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427
| ||||| || || | ||||| || || || ||||||||||||||
Sbjct 33363533 ATGAGTATGGCAGCTCCACTCCTGCATCCTCGGCTGCATCCAGAATGTA 33363581
>seq1063
Length=431445
Score = 131 bits (144), Expect = 2e-25
Identities = 392/595 (66%), Gaps = 60/595 (10%)
Strand=Plus/Plus
Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792
||||| || || | |||||| || | ||||| ||||||||||| ||| |||||||||
Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957
Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG-----TTGTAG-GTCTCTTCTTCT 7846
|||| || | || || || |||||||| || || ||||| |||||||| |||
Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017
Query 7847 TGACCGAACTTATAACCATAGTT--CTGGGACTCAGACTCAGTGGTTTCACGAACCAGAG 7904
| |||||| | || | | | | ||| || |||||| |||| | | | |
Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075
Query 7905 AAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG- 7963
||||| || | ||||||||||| | ||| || | || || ||||||| |
Sbjct 54076 AAGAGTGGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 54126
Query 7964 -ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCAT 8022
|| || | |||||| || | ||||| ||||||||||| ||||| | || |||| |||
Sbjct 54127 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCAT 54186
Query 8023 GTAGTTGAACGTACCAGAGATGCCA-----------------------AGAGGCATAGCG 8059
| ||| ||| |||||||| || ||| | ||||||| ||
Sbjct 54187 GAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATCTGTATTCCTAAAGGCATATCG 54246
Query 8060 TCAGAGAAAGAACCTTGACCGAAAGGAT--AGACGAGGAATACAGCAGA-TGCTGCAGCA 8116
||||||||| | ||||||| | || || | | | || || | | ||| | ||||
Sbjct 54247 TCAGAGAAACATCCTTGACTAATAGAATCAATAGGGTCGATCAAGAAAACTGCAGTAGCA 54306
Query 8117 ACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCC 8176
|| ||||| ||||| ||| ||||| ||||||||||||| || || |
Sbjct 54307 AC--GAGCATCATATGCAACAGCAATCCAAGGACGCATACCTA-----TATTGAAACGGC 54359
Query 8177 CACTCACGACCCATGTATGCATAGATACCGA-TCAGGAAGTGGAAGATAACGAG-TTGGA 8234
||||| |||||||||| | | ||| | ||| ||||| | | || || || |
Sbjct 54360 AACTCAGGACCCATGTAATAAGCTACACCAAGTCA-TAAGTGTCAAACAATTAGCTTCTA 54418
Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCA-AGA-GAAGC-TGCTTCCCAGATGGG 8286
||||| || ||||||| ||||||| || ||| | ||| |||||||| ||| ||
Sbjct 54419 CGGGACCGCCATTGTAGAACCACTCAACACAGATGCAGCTTGCTTCCCGGATAGG 54473
>seq4
Length=30051516
Score = 131 bits (144), Expect = 2e-25
Identities = 131/169 (78%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 7541 AGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGC----CAAGACC 7596
||||| | ||||||||| ||||||||||| || || || |||||||| | |||||
Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868
Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656
|||||| |||| | || ||| || || | ||||||||| |||| |||| | |||
Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACGGA 1282810
Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCA 7705
|||||||| |||||||| || |||||||| ||||||||||||| ||||
Sbjct 1282809 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCA 1282761
>seq10
Length=33665772
Score = 122 bits (134), Expect = 1e-22
Identities = 230/334 (69%), Gaps = 21/334 (6%)
Strand=Plus/Minus
Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792
||||| || || | |||||| || ||| ||||||||||| ||| |||||| ||
Sbjct 4333222 GGCCACGCAGCCAAGAAGAAATGTCAAGAAGTCGAGTTGTTGAAACTAGCATATTGGCAG 4333163
Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG-----TTGTAG-GTCTCTTCTTCT 7846
||| || | || || || |||||| | || ||| ||||| |||||||| |||
Sbjct 4333162 TTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCTCT 4333103
Query 7847 TGACCGAACTTATAACCATAGTT--CTGGGACTCAGACTCAGTGGTTTCACGAACCAGAG 7904
| |||||| | || | | | | ||| || |||||| |||| | | | |
Sbjct 4333102 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 4333045
Query 7905 AAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG- 7963
||||| | || | ||||||||||| | ||| || | || || ||||||| |
Sbjct 4333044 AAGAGTTGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 4332994
Query 7964 -ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCAT 8022
|| || | |||||| || | ||||| ||||||||||| ||||| ||||| |||| |||
Sbjct 4332993 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATCAT 4332934
Query 8023 GTAGTTGAACGTACCAGAGATGCCAAGAGGCATA 8056
| ||||||| |||||||| || || | |||||||
Sbjct 4332933 GAAGTTGAAAGTACCAGATATTCCTAAAGGCATA 4332900
>seq11
Length=25514024
Score = 104 bits (114), Expect = 3e-17
Identities = 167/237 (70%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 10193 CAACGTGCCATCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGG 10252
||||| |||||||||| || ||| || |||| ||| || |||||||| | |||
Sbjct 15748891 CAACG-GCCATCAGTACAGATCACTTTCCTTGTGTGTCTGAATGACACAATCTGACATGG 15748949
Query 10253 GATAAGAAACACAGGTCAGAAGGAAACCAGCATCGA--TCTGGTCATCATCAAGGAACGA 10310
|||| | |||||| ||||| | | |||| | | || |||| |||||||||||| ||
Sbjct 15748950 GATAGGCAACACAAGTCAGCATGTAACC--CTTTGAAATCTGTGAATCATCAAGGAAGGA 15749007
Query 10311 TTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACC 10370
| ||| ||||| || | ||| || | | | ||||||||| || ||||| |||||
Sbjct 15749008 TCCATCTGACTGATCAACAGCACCAGACACCATCTGGCCTGCACAGCTGGAACACGCACC 15749067
Query 10371 AGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427
|| ||||| ||||| || || | ||||| ||||| | |||||||||||
Sbjct 15749068 GGCACGGCATGAGTACGGCAGCTCCACTCCTGCCGTCTCAGCTGAGTCCAGAATGTA 15749124
>seq1042
Length=564079
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 7958 CCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACA 8017
||||| | || | ||||| || |||||||| |||||||||||||| || ||||| |||
Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798
Query 8018 AGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGA 8077
| |||| ||| ||| ||||||||||| || |||||||| | || || | | ||||||
Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTGA 550858
Query 8078 CC 8079
||
Sbjct 550859 CC 550860
>seq1024
Length=717246
Score = 93.3 bits (102), Expect = 5e-14
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 7541 AGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCA 7600
||||| ||||||||||||||||||||||| || ||||| |||||||| ||||| ||||
Sbjct 156873 AGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCA 156814
Query 7601 CGGTTGAGCACGTCTGCCCAGGTGTT 7626
||||||| | || ||||| |||||
Sbjct 156813 CGGTTGATGATATCAGCCCAAGTGTT 156788
>seq5
Length=29377369
Score = 82.4 bits (90), Expect = 9e-11
Identities = 133/190 (70%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 10247 TCGTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGA 10306
|| |||| ||||| |||||||| ||||| |||| | ||||| || |||||||
Sbjct 551676 TCTTGGG-TAAGAGACACAGGTAAGAAGATAACCCTTGGCCATCTGTGATTCGTCAAGGA 551618
Query 10307 ACGATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGG 10366
| ||| |||| ||||| || |||| || | | | || ||||| | ||||| |
Sbjct 551617 AGGATCCATCGGACTGATCAACGTTACCAGACACCATCTGACCAGCACACGTAGAACATG 551558
Query 10367 CACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGT 10426
| || || ||||| ||||| ||||| | |||||| | ||||| || ||||||||||
Sbjct 551557 CTCCGGCACGGCAAGAGTAAGGAAGGTCTACGCCTGCAGCCTCAGCTGCGTCCAGAATGT 551498
Query 10427 ACTGATCGTC 10436
| ||||||
Sbjct 551497 AGGTATCGTC 551488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622068349950960
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