Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1382 181 1e-40 seq9 147 3e-30 seq1063 131 2e-25 seq4 131 2e-25 seq10 122 1e-22 seq11 104 3e-17 seq1042 98.7 1e-15 seq1024 93.3 5e-14 seq5 82.4 9e-11 >seq1382 Length=172696 Score = 181 bits (200), Expect = 1e-40 Identities = 249/342 (73%), Gaps = 17/342 (5%) Strand=Plus/Minus Query 7676 TTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGC 7735 ||||||||||| ||||||||||||| ||| | ||| |||| |||||| |||| ||||||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 7736 CATGCTGCGAGGAA--GAAGTGCAG--CGAACGGGAGTTGTTGAACGAAGCGTATTGGAA 7791 || ||||| | ||| | || || | || ||||||||||| ||| ||||||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 7792 GATCAGACGACCAAAGTATCCGTGAGCAGCAACGA-----TGTTGTAGGTCT----CTTC 7842 ||||| || | || || || |||||||| || | | ||||| |||| |||| Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 7843 TTCTTGACCGAACTTATAACCATAGTTCTG-GGACTCAGACTCAGTGGTTTCACGAACCA 7901 |||||||||||| | ||||| | | || || || ||||||||||| | | || Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 7902 GAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACC-- 7959 | ||||||||| | ||||||||||| |||||||| || || || || || ||||| Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539 Query 7960 AGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTG 8001 ||| | || | ||||| || || ||||| ||||||||||| Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497 >seq9 Length=34148863 Score = 147 bits (162), Expect = 3e-30 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 7952 AAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGG 8011 || ||||||| || || | |||||| | | ||||| ||||||||||| ||||| | Sbjct 1507158 AATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAGA 1507099 Query 8012 AAGACAAG-CATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGA 8070 || |||| |||| ||||||| | | ||| || || | ||||||| | ||||||||| Sbjct 1507098 AATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAACT 1507040 Query 8071 ACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTA 8130 |||||||| | ||| |||| | ||| ||||||| || || ||||| ||||| || || Sbjct 1507039 TCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1506980 Query 8131 TGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCAT 8190 ||| ||| ||||| ||||||||||| ||| | || |||||| ||||| || | || Sbjct 1506979 TGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTCATACTCATGATCAAT 1506920 Query 8191 GTA 8193 ||| Sbjct 1506919 GTA 1506917 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 10202 ATCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATC-GCTCGTGGGATAAGAA 10260 |||| || ||||| | ||||||| | | | | || || || | || | ||||| || Sbjct 33363356 ATCAATATAGTTCGCCTTCTTTGTGAGTGTAGATGACGCATTCTGATC-TCGGATAGGAG 33363414 Query 10261 ACACAGGTCAGAAGGAAACCAGCATCGA--TCTGGTCATCATCAAGGAACGATTGATCGC 10318 ||||||||||| | |||| | |||| |||| ||||| ||||| ||| ||| Sbjct 33363415 ACACAGGTCAGGATATAACC--CTTCGACATCTGTGTTTCATCGAGGAAGGATCCATCCG 33363472 Query 10319 TTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGC 10378 ||||| || | ||||| | | || || ||||| ||||||| || |||||||||| Sbjct 33363473 ACTGATCGACATTGCCCGACACCAATTGACCAGCACACGTCGAACATGCTCCAGCTCGGC 33363532 Query 10379 ACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 | ||||| || || | ||||| || || || |||||||||||||| Sbjct 33363533 ATGAGTATGGCAGCTCCACTCCTGCATCCTCGGCTGCATCCAGAATGTA 33363581 >seq1063 Length=431445 Score = 131 bits (144), Expect = 2e-25 Identities = 392/595 (66%), Gaps = 60/595 (10%) Strand=Plus/Plus Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792 ||||| || || | |||||| || | ||||| ||||||||||| ||| ||||||||| Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957 Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG-----TTGTAG-GTCTCTTCTTCT 7846 |||| || | || || || |||||||| || || ||||| |||||||| ||| Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017 Query 7847 TGACCGAACTTATAACCATAGTT--CTGGGACTCAGACTCAGTGGTTTCACGAACCAGAG 7904 | |||||| | || | | | | ||| || |||||| |||| | | | | Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075 Query 7905 AAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG- 7963 ||||| || | ||||||||||| | ||| || | || || ||||||| | Sbjct 54076 AAGAGTGGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 54126 Query 7964 -ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCAT 8022 || || | |||||| || | ||||| ||||||||||| ||||| | || |||| ||| Sbjct 54127 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCAT 54186 Query 8023 GTAGTTGAACGTACCAGAGATGCCA-----------------------AGAGGCATAGCG 8059 | ||| ||| |||||||| || ||| | ||||||| || Sbjct 54187 GAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATCTGTATTCCTAAAGGCATATCG 54246 Query 8060 TCAGAGAAAGAACCTTGACCGAAAGGAT--AGACGAGGAATACAGCAGA-TGCTGCAGCA 8116 ||||||||| | ||||||| | || || | | | || || | | ||| | |||| Sbjct 54247 TCAGAGAAACATCCTTGACTAATAGAATCAATAGGGTCGATCAAGAAAACTGCAGTAGCA 54306 Query 8117 ACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCC 8176 || ||||| ||||| ||| ||||| ||||||||||||| || || | Sbjct 54307 AC--GAGCATCATATGCAACAGCAATCCAAGGACGCATACCTA-----TATTGAAACGGC 54359 Query 8177 CACTCACGACCCATGTATGCATAGATACCGA-TCAGGAAGTGGAAGATAACGAG-TTGGA 8234 ||||| |||||||||| | | ||| | ||| ||||| | | || || || | Sbjct 54360 AACTCAGGACCCATGTAATAAGCTACACCAAGTCA-TAAGTGTCAAACAATTAGCTTCTA 54418 Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCA-AGA-GAAGC-TGCTTCCCAGATGGG 8286 ||||| || ||||||| ||||||| || ||| | ||| |||||||| ||| || Sbjct 54419 CGGGACCGCCATTGTAGAACCACTCAACACAGATGCAGCTTGCTTCCCGGATAGG 54473 >seq4 Length=30051516 Score = 131 bits (144), Expect = 2e-25 Identities = 131/169 (78%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 7541 AGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGC----CAAGACC 7596 ||||| | ||||||||| ||||||||||| || || || |||||||| | ||||| Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868 Query 7597 AGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGA 7656 |||||| |||| | || ||| || || | ||||||||| |||| |||| | ||| Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACGGA 1282810 Query 7657 CTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCA 7705 |||||||| |||||||| || |||||||| ||||||||||||| |||| Sbjct 1282809 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCA 1282761 >seq10 Length=33665772 Score = 122 bits (134), Expect = 1e-22 Identities = 230/334 (69%), Gaps = 21/334 (6%) Strand=Plus/Minus Query 7733 GGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAG 7792 ||||| || || | |||||| || ||| ||||||||||| ||| |||||| || Sbjct 4333222 GGCCACGCAGCCAAGAAGAAATGTCAAGAAGTCGAGTTGTTGAAACTAGCATATTGGCAG 4333163 Query 7793 ATCAGACGACCAAAGTATCCGTGAGCAGCAACGATG-----TTGTAG-GTCTCTTCTTCT 7846 ||| || | || || || |||||| | || ||| ||||| |||||||| ||| Sbjct 4333162 TTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCTCT 4333103 Query 7847 TGACCGAACTTATAACCATAGTT--CTGGGACTCAGACTCAGTGGTTTCACGAACCAGAG 7904 | |||||| | || | | | | ||| || |||||| |||| | | | | Sbjct 4333102 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 4333045 Query 7905 AAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG- 7963 ||||| | || | ||||||||||| | ||| || | || || ||||||| | Sbjct 4333044 AAGAGTTGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 4332994 Query 7964 -ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCAT 8022 || || | |||||| || | ||||| ||||||||||| ||||| ||||| |||| ||| Sbjct 4332993 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATCAT 4332934 Query 8023 GTAGTTGAACGTACCAGAGATGCCAAGAGGCATA 8056 | ||||||| |||||||| || || | ||||||| Sbjct 4332933 GAAGTTGAAAGTACCAGATATTCCTAAAGGCATA 4332900 >seq11 Length=25514024 Score = 104 bits (114), Expect = 3e-17 Identities = 167/237 (70%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 10193 CAACGTGCCATCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGG 10252 ||||| |||||||||| || ||| || |||| ||| || |||||||| | ||| Sbjct 15748891 CAACG-GCCATCAGTACAGATCACTTTCCTTGTGTGTCTGAATGACACAATCTGACATGG 15748949 Query 10253 GATAAGAAACACAGGTCAGAAGGAAACCAGCATCGA--TCTGGTCATCATCAAGGAACGA 10310 |||| | |||||| ||||| | | |||| | | || |||| |||||||||||| || Sbjct 15748950 GATAGGCAACACAAGTCAGCATGTAACC--CTTTGAAATCTGTGAATCATCAAGGAAGGA 15749007 Query 10311 TTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACC 10370 | ||| ||||| || | ||| || | | | ||||||||| || ||||| ||||| Sbjct 15749008 TCCATCTGACTGATCAACAGCACCAGACACCATCTGGCCTGCACAGCTGGAACACGCACC 15749067 Query 10371 AGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 || ||||| ||||| || || | ||||| ||||| | ||||||||||| Sbjct 15749068 GGCACGGCATGAGTACGGCAGCTCCACTCCTGCCGTCTCAGCTGAGTCCAGAATGTA 15749124 >seq1042 Length=564079 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 7958 CCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACA 8017 ||||| | || | ||||| || |||||||| |||||||||||||| || ||||| ||| Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798 Query 8018 AGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGA 8077 | |||| ||| ||| ||||||||||| || |||||||| | || || | | |||||| Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTGA 550858 Query 8078 CC 8079 || Sbjct 550859 CC 550860 >seq1024 Length=717246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 7541 AGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCA 7600 ||||| ||||||||||||||||||||||| || ||||| |||||||| ||||| |||| Sbjct 156873 AGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCA 156814 Query 7601 CGGTTGAGCACGTCTGCCCAGGTGTT 7626 ||||||| | || ||||| ||||| Sbjct 156813 CGGTTGATGATATCAGCCCAAGTGTT 156788 >seq5 Length=29377369 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/190 (70%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 10247 TCGTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGA 10306 || |||| ||||| |||||||| ||||| |||| | ||||| || ||||||| Sbjct 551676 TCTTGGG-TAAGAGACACAGGTAAGAAGATAACCCTTGGCCATCTGTGATTCGTCAAGGA 551618 Query 10307 ACGATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGG 10366 | ||| |||| ||||| || |||| || | | | || ||||| | ||||| | Sbjct 551617 AGGATCCATCGGACTGATCAACGTTACCAGACACCATCTGACCAGCACACGTAGAACATG 551558 Query 10367 CACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGT 10426 | || || ||||| ||||| ||||| | |||||| | ||||| || |||||||||| Sbjct 551557 CTCCGGCACGGCAAGAGTAAGGAAGGTCTACGCCTGCAGCCTCAGCTGCGTCCAGAATGT 551498 Query 10427 ACTGATCGTC 10436 | |||||| Sbjct 551497 AGGTATCGTC 551488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622068349950960