Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq9 150 2e-31
seq6 145 9e-30
seq4 86.0 8e-12
>seq9
Length=34148863
Score = 150 bits (166), Expect = 2e-31
Identities = 247/348 (71%), Gaps = 6/348 (2%)
Strand=Plus/Minus
Query 127342 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 127401
||| || || || | ||| |||| ||||||| ||| ||| |||||| ||||
Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679
Query 127402 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460
||| | ||| ||||| ||||| ||| |||| || ||| ||||| ||||| ||| |
Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620
Query 127461 CGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAA-AGTCTTGAAGAGTTCCAC 127518
|||| || | | | ||| | ||| | | ||||| | || || | ||||
Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 33079562
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|| || || |||||| |||||||| |||||||||||||| || |||||| || ||
Sbjct 33079561 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 33079502
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
|||||||| || || ||||| | |||||| || || || || || || |||||||||||
Sbjct 33079501 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGAT 33079442
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA 127686
||||| || || ||||| |||| || |||||||| ||||||| |||
Sbjct 33079441 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGA 33079394
Score = 147 bits (162), Expect = 3e-30
Identities = 171/230 (74%), Gaps = 3/230 (1%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|| || ||||||||||||||||| || || ||||||||| || || |||||||| ||
Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|||||||| | ||| || || || || || ||||||||||||||||| ||||| |||||
Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711
||||| || | | ||||||||||| |||| ||| | |||| ||| || |||
Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA---AGATTCAATCCAGCGCAGGGCC 1096801
Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761
|| | |||||| ||| | | ||||| |||| ||| ||| |||||
Sbjct 1096800 CAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAG 1096751
Score = 93.3 bits (102), Expect = 5e-14
Identities = 189/279 (68%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848
||| ||||||||||| |||||||| ||||||||||| || || | ||||| || | |
Sbjct 28872019 GAACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACC 28871960
Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908
| || | || || | | ||| | || || || |||||||| || ||||| || ||
Sbjct 28871959 GCCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATG 28871902
Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
|| ||| || | || || || | ||| || || ||| || || ||||||
Sbjct 28871901 CAAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCC 28871842
Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028
|| |||| |||||| || | || || | || || |||||| ||| || || |||
Sbjct 28871841 ACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCC 28871782
Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067
|| | |||||||| || || || || || || || |||
Sbjct 28871781 GCCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGT 28871743
>seq6
Length=34899179
Score = 145 bits (160), Expect = 9e-30
Identities = 133/168 (79%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578
|||||| || ||| || |||||||||||||||||||| || || |||||| |||||
Sbjct 4328736 AGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 4328677
Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638
|||||||| || |||||||| | |||||| || || || || ||||| ||||| |||||
Sbjct 4328676 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGAT 4328617
Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA 127686
||||| || || ||||| || | || |||||||| ||||||| |||
Sbjct 4328616 GCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGA 4328569
Score = 141 bits (156), Expect = 1e-28
Identities = 122/151 (81%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||| |||||||||||||||||||| || || |||||| ||||| |||||||| ||
Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
|||||||| | |||||| || || || || ||||| |||||||||| ||||| || ||
Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681
||||| |||| || |||||||| || |||
Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/133 (74%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 177697 CCCATCCTTGATCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTA 177756
|||||| | || ||||| ||||||| |||| ||||||| || | |||||| |||||
Sbjct 749356 CCCATCGGCGGTCTCGATGATGAACTCCGCGGAGAAGATGTTGGTGAGCTTGGCGCCGTA 749415
Query 177757 GCCATTGCGTCCACCAACAATTCTCTTCTT---GTTGTCATCGTAGTTTGTACTCGTGAG 177813
|||||| || |||| | | ||||||| |||||| |||||||| | || |||||
Sbjct 749416 GCCATTTCGCCCAC---CCGTGGTCTTCTTGACGTTGTCGTCGTAGTTGCTGCTGGTGAG 749472
Query 177814 AAGGTGACCAAAG 177826
||||| || |||
Sbjct 749473 GAGGTGGCCGAAG 749485
>seq4
Length=30051516
Score = 86.0 bits (94), Expect = 8e-12
Identities = 187/278 (67%), Gaps = 4/278 (1%)
Strand=Plus/Plus
Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848
||| ||||||||||| |||||||| |||||||| || || || | |||||||| | |
Sbjct 3938697 GAACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACC 3938756
Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908
| || | || || | | ||| | || || || |||||||| || |||||||| ||
Sbjct 3938757 GCCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATG 3938814
Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968
|||||| || | || ||||| | ||| || || ||| || || || |||
Sbjct 3938815 CACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCC 3938874
Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028
||||| | |||||| || | || || | ||| || ||| ||||| || || ||
Sbjct 3938875 ACAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCT 3938934
Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066
|| | || | || || || ||||| || || || ||
Sbjct 3938935 GCCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGG 3938972
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613451531890440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |