Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 150 2e-31 seq6 145 9e-30 seq4 86.0 8e-12 >seq9 Length=34148863 Score = 150 bits (166), Expect = 2e-31 Identities = 247/348 (71%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 127342 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGAT 127401 ||| || || || | ||| |||| ||||||| ||| ||| |||||| |||| Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679 Query 127402 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTA 127460 ||| | ||| ||||| ||||| ||| |||| || ||| ||||| ||||| ||| | Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620 Query 127461 CGATGGCGTGAATAGTGTCCACCC-CAGGTCTATTGCGTAA-AGTCTTGAAGAGTTCCAC 127518 |||| || | | | ||| | ||| | | ||||| | || || | |||| Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 33079562 Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 || || || |||||| |||||||| |||||||||||||| || |||||| || || Sbjct 33079561 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 33079502 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || || ||||| | |||||| || || || || || || ||||||||||| Sbjct 33079501 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGAT 33079442 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA 127686 ||||| || || ||||| |||| || |||||||| ||||||| ||| Sbjct 33079441 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGA 33079394 Score = 147 bits (162), Expect = 3e-30 Identities = 171/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || ||||||||||||||||| || || ||||||||| || || |||||||| || Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | ||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 ||||| || | | ||||||||||| |||| ||| | |||| ||| || ||| Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA---AGATTCAATCCAGCGCAGGGCC 1096801 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || | |||||| ||| | | ||||| |||| ||| ||| ||||| Sbjct 1096800 CAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAG 1096751 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| ||||||||||| |||||||| ||||||||||| || || | ||||| || | | Sbjct 28872019 GAACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACC 28871960 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | || | || || | | ||| | || || || |||||||| || ||||| || || Sbjct 28871959 GCCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATG 28871902 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| || | || || || | ||| || || ||| || || |||||| Sbjct 28871901 CAAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCC 28871842 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || |||| |||||| || | || || | || || |||||| ||| || || ||| Sbjct 28871841 ACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCC 28871782 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 13067 || | |||||||| || || || || || || || ||| Sbjct 28871781 GCCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGT 28871743 >seq6 Length=34899179 Score = 145 bits (160), Expect = 9e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| || |||||||||||||||||||| || || |||||| ||||| Sbjct 4328736 AGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACC 4328677 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || |||||||| | |||||| || || || || ||||| ||||| ||||| Sbjct 4328676 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGAT 4328617 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGA 127686 ||||| || || ||||| || | || |||||||| ||||||| ||| Sbjct 4328616 GCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGA 4328569 Score = 141 bits (156), Expect = 1e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||||||||||||||| || || |||||| ||||| |||||||| || Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || || || || ||||| |||||||||| ||||| || || Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 ||||| |||| || |||||||| || ||| Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/133 (74%), Gaps = 6/133 (5%) Strand=Plus/Plus Query 177697 CCCATCCTTGATCACGATGGAAAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTA 177756 |||||| | || ||||| ||||||| |||| ||||||| || | |||||| ||||| Sbjct 749356 CCCATCGGCGGTCTCGATGATGAACTCCGCGGAGAAGATGTTGGTGAGCTTGGCGCCGTA 749415 Query 177757 GCCATTGCGTCCACCAACAATTCTCTTCTT---GTTGTCATCGTAGTTTGTACTCGTGAG 177813 |||||| || |||| | | ||||||| |||||| |||||||| | || ||||| Sbjct 749416 GCCATTTCGCCCAC---CCGTGGTCTTCTTGACGTTGTCGTCGTAGTTGCTGCTGGTGAG 749472 Query 177814 AAGGTGACCAAAG 177826 ||||| || ||| Sbjct 749473 GAGGTGGCCGAAG 749485 >seq4 Length=30051516 Score = 86.0 bits (94), Expect = 8e-12 Identities = 187/278 (67%), Gaps = 4/278 (1%) Strand=Plus/Plus Query 12791 GAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCG 12848 ||| ||||||||||| |||||||| |||||||| || || || | |||||||| | | Sbjct 3938697 GAACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACC 3938756 Query 12849 GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATA 12908 | || | || || | | ||| | || || || |||||||| || |||||||| || Sbjct 3938757 GCCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATG 3938814 Query 12909 CACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 |||||| || | || ||||| | ||| || || ||| || || || ||| Sbjct 3938815 CACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCC 3938874 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 ||||| | |||||| || | || || | ||| || ||| ||||| || || || Sbjct 3938875 ACAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCT 3938934 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | || | || || || ||||| || || || || Sbjct 3938935 GCCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGG 3938972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613451531890440