Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 123 4e-23 seq9 111 3e-19 >seq6 Length=34899179 Score = 123 bits (136), Expect = 4e-23 Identities = 134/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| |||||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 4328744 AGGAGGCAAGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAG 4328685 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 |||| || ||||||| || ||| |||||||| || |||| |||| ||| | ||| Sbjct 4328684 GTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 4328626 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 |||||||| ||||| ||| || || || ||||| | ||| | || ||| || Sbjct 4328625 GAAAAAGATGCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCG 4328571 Score = 109 bits (120), Expect = 9e-19 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| |||||| || | | Sbjct 15337026 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAG 15336967 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 |||| |||||||||| || ||| |||||||| || |||| |||| ||| | ||| Sbjct 15336966 GTGAGACCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 15336908 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || |||| ||||| ||| || || || ||||| | ||| Sbjct 15336907 GAAGAAGACTCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 15336866 >seq9 Length=34148863 Score = 111 bits (122), Expect = 3e-19 Identities = 530/836 (63%), Gaps = 10/836 (1%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||| ||||| ||||| ||||| |||| || || || ||||| | |||| |||| Sbjct 1097264 TCTTTTCGAAGAAGTTCGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGT 1097205 Query 159708 TCTTCACGTGATAGCGCTT-CGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 | ||| | | ||| | | | || || | | | |||| | ||| |||||||| Sbjct 1097204 TGACCACCCCAAACATCTTACCGTGACCC-AGTGACTCAAGCAGGCGGTCGGCCACAAAC 1097146 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 || ||||| | ||| | || | ||| ||||| | || ||||| || || || Sbjct 1097145 TCTATGTACTGGCTCATAAGGTCGCCGTTCATCCCGACGAGGGCTACGGGAAGGGCGTCA 1097086 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 | | ||||||| ||| || ||||| || |||| || || | |||||| || | | Sbjct 1097085 CAAACAAACTCCCGCTCGATGTCGACAGCGTCGGCAACGATGGCCCGGACACGGTCCTCC 1097026 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | ||||| | | || | | |||||||| || |||||||| || || ||| Sbjct 1097025 GACAGCTTGTTGCGGAGGAGGCTGT---AGAGGAGGCAGGCGAAGTCGCAATGAAGGCCC 1096969 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| || ||||| | |||||| || | | |||| |||||||||| || ||| ||| Sbjct 1096968 TCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTG 1096909 Query 160007 AGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 |||||||| || | |||| ||| | || || ||||| ||||| || || || || Sbjct 1096908 AGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAGGCGAAGGC 1096850 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 || | | ||| |||| ||| || | ||| |||| | |||||| || || Sbjct 1096849 GACAATTCGCTCGGCAAACGAGCCGGAAGATTCA---ATCCAGCGCAGGGCCCAGTCGGC 1096793 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 ||| |||| | || | ||||| ||| || | | | || ||| | Sbjct 1096792 CTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAGACGGGTCTTCTCGTCAGG 1096733 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 |||||||| || | | || |||||||| || | ||| | || |||||||| Sbjct 1096732 GTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATCTCAGAGTGGATGTTCTCGATGGC 1096673 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTG 160305 ||||| ||| |||||| ||||| | ||| || || | |||||| Sbjct 1096672 GATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGCTGGACGTCGCGCATGAACCGGGC 1096613 Query 160306 ACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGAT 160365 | || || || || | ||||| | ||| || ||||| || | ||||| ||||| Sbjct 1096612 GGCGAGGTTCTCAAGGACGATGCCGTCTGAGGCGGCGAAGAAGGCAAGAACGTGGGAGAT 1096553 Query 160366 GAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATC 160425 ||| || | |||||| | | ||| | | | ||| || | ||||| | | || ||| Sbjct 1096552 GAAGTGGCGCTCGTCGTGGGAGAGGCGATGCTGCCAATGGGGTACGTCCGGAGACAGATC 1096493 Query 160426 AACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATgg 160481 ||||| ||||| |||| || ||| || | ||||| | ||||||||| Sbjct 1096492 CACCTCCTCCGCCGTCCAGAAGGAGGCCACCGCCTTCTTGTAGAACTCCCAGATGG 1096437 Score = 105 bits (116), Expect = 1e-17 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| |||||||| | | Sbjct 33079569 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAG 33079510 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCT 160035 ||||||| ||||||| || || |||||||| || || | |||| || | |||| Sbjct 33079509 GTGAGGCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAG-CGCAGAAGGAACCGGA 33079451 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090 || ||||| ||||| ||| || || || ||||| | ||| | || ||| || Sbjct 33079450 GAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCG 33079396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795083049605040