Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 4e-23
seq9 111 3e-19
>seq6
Length=34899179
Score = 123 bits (136), Expect = 4e-23
Identities = 134/175 (77%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976
|||||||| |||||||||||||| || |||||||| || ||||||| ||||||||| | |
Sbjct 4328744 AGGAGGCAAGCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAG 4328685
Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035
|||| || ||||||| || ||| |||||||| || |||| |||| ||| | |||
Sbjct 4328684 GTGAGACCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 4328626
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090
|||||||| ||||| ||| || || || ||||| | ||| | || ||| ||
Sbjct 4328625 GAAAAAGATGCCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCG 4328571
Score = 109 bits (120), Expect = 9e-19
Identities = 123/162 (76%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976
|||||||| || ||||||||||| || |||||||| || ||||||| |||||| || | |
Sbjct 15337026 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAG 15336967
Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035
|||| |||||||||| || ||| |||||||| || |||| |||| ||| | |||
Sbjct 15336966 GTGAGACCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGGAGCCGGA 15336908
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077
|| |||| ||||| ||| || || || ||||| | |||
Sbjct 15336907 GAAGAAGACTCCCTCGACGCAGGCGAAGGCAACGAGGCGCTC 15336866
>seq9
Length=34148863
Score = 111 bits (122), Expect = 3e-19
Identities = 530/836 (63%), Gaps = 10/836 (1%)
Strand=Plus/Minus
Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707
|||| ||||| ||||| ||||| |||| || || || ||||| | |||| ||||
Sbjct 1097264 TCTTTTCGAAGAAGTTCGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGT 1097205
Query 159708 TCTTCACGTGATAGCGCTT-CGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766
| ||| | | ||| | | | || || | | | |||| | ||| ||||||||
Sbjct 1097204 TGACCACCCCAAACATCTTACCGTGACCC-AGTGACTCAAGCAGGCGGTCGGCCACAAAC 1097146
Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826
|| ||||| | ||| | || | ||| ||||| | || ||||| || || ||
Sbjct 1097145 TCTATGTACTGGCTCATAAGGTCGCCGTTCATCCCGACGAGGGCTACGGGAAGGGCGTCA 1097086
Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886
| | ||||||| ||| || ||||| || |||| || || | |||||| || | |
Sbjct 1097085 CAAACAAACTCCCGCTCGATGTCGACAGCGTCGGCAACGATGGCCCGGACACGGTCCTCC 1097026
Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946
| ||||| | | || | | |||||||| || |||||||| || || |||
Sbjct 1097025 GACAGCTTGTTGCGGAGGAGGCTGT---AGAGGAGGCAGGCGAAGTCGCAATGAAGGCCC 1096969
Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006
||||| || ||||| | |||||| || | | |||| |||||||||| || ||| |||
Sbjct 1096968 TCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTG 1096909
Query 160007 AGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065
|||||||| || | |||| ||| | || || ||||| ||||| || || || ||
Sbjct 1096908 AGCCAAAAGATAG-CGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAGGCGAAGGC 1096850
Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125
|| | | ||| |||| ||| || | ||| |||| | |||||| || ||
Sbjct 1096849 GACAATTCGCTCGGCAAACGAGCCGGAAGATTCA---ATCCAGCGCAGGGCCCAGTCGGC 1096793
Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185
||| |||| | || | ||||| ||| || | | | || ||| |
Sbjct 1096792 CTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAGACGGGTCTTCTCGTCAGG 1096733
Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245
|||||||| || | | || |||||||| || | ||| | || ||||||||
Sbjct 1096732 GTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATCTCAGAGTGGATGTTCTCGATGGC 1096673
Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTG 160305
||||| ||| |||||| ||||| | ||| || || | ||||||
Sbjct 1096672 GATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGCTGGACGTCGCGCATGAACCGGGC 1096613
Query 160306 ACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGAT 160365
| || || || || | ||||| | ||| || ||||| || | ||||| |||||
Sbjct 1096612 GGCGAGGTTCTCAAGGACGATGCCGTCTGAGGCGGCGAAGAAGGCAAGAACGTGGGAGAT 1096553
Query 160366 GAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATC 160425
||| || | |||||| | | ||| | | | ||| || | ||||| | | || |||
Sbjct 1096552 GAAGTGGCGCTCGTCGTGGGAGAGGCGATGCTGCCAATGGGGTACGTCCGGAGACAGATC 1096493
Query 160426 AACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGATgg 160481
||||| ||||| |||| || ||| || | ||||| | |||||||||
Sbjct 1096492 CACCTCCTCCGCCGTCCAGAAGGAGGCCACCGCCTTCTTGTAGAACTCCCAGATGG 1096437
Score = 105 bits (116), Expect = 1e-17
Identities = 130/175 (74%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976
|||||||| || ||||||||||| || |||||||| || ||||||| |||||||| | |
Sbjct 33079569 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAG 33079510
Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCA-AAAGCACCGCT 160035
||||||| ||||||| || || |||||||| || || | |||| || | ||||
Sbjct 33079509 GTGAGGCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAG-CGCAGAAGGAACCGGA 33079451
Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCG 160090
|| ||||| ||||| ||| || || || ||||| | ||| | || ||| ||
Sbjct 33079450 GAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCG 33079396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795083049605040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |