Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 165 1e-35 seq6 159 4e-34 seq1022 158 2e-33 seq7 134 2e-26 seq4 109 7e-19 >seq9 Length=34148863 Score = 165 bits (182), Expect = 1e-35 Identities = 126/149 (85%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || ||||| |||||| | |||| || || ||||| ||||| |||||||||||||| ||| Sbjct 1096829 TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCC 1096888 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||||||||| | ||||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 1096889 TTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1096948 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||||||||||| ||||||||||| || || Sbjct 1096949 GAGCTTATCTCCCGTGACGAGGGCCTTCA 1096977 Score = 149 bits (164), Expect = 8e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | || || || || || ||||| ||||||||||| |||||| Sbjct 33079400 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCC 33079459 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||||||||| | ||||||||||| || || |||||||| || ||| |||||||||| Sbjct 33079460 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 33079519 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || ||||| || |||||||| |||||| Sbjct 33079520 GAACTCATCTCCCGCGACGAGGGCCTCCAC 33079549 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/320 (67%), Gaps = 12/320 (4%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 || ||||||||||||||||| ||||| || || || || |||| ||||| || | | | Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || | || || | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901 Query 16093 ATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 | ||| || ||||| | || || | |||||| || | | || |||||| Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTC----TCGAATAAATCCCGGACCCTCGACGCCCCCACA 28871845 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || || |||| |||||| || | | || | || || |||||| || | || Sbjct 28871844 CCCACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCT 28871785 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 ||||| | |||||||| || || || || || || || || ||| | | |||| | Sbjct 28871784 CCCGCCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAA 28871725 Query 16269 CCTCGTGGAATCTTGGCGCC 16288 ||| || ||||| || || Sbjct 28871724 CCTTTGGGGATCTTCGCCCC 28871705 >seq6 Length=34899179 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||||||| |||| || || || || ||||| ||||| ||||| || ||| Sbjct 4328575 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 4328634 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || |||||||| |||||| |||||||||| Sbjct 4328635 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 4328694 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 4328695 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 4328735 Score = 149 bits (164), Expect = 8e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| | || || || || || ||||| |||||||||| || ||| Sbjct 15336857 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCC 15336916 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||||||||||||||| |||||||| |||||| |||||| ||| Sbjct 15336917 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| ||||||||||| |||||| Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCAC 15337006 >seq1022 Length=749713 Score = 158 bits (174), Expect = 2e-33 Identities = 272/388 (70%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| || || || ||||| | || ||| || || || |||| || ||||| ||| Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 || |||| |||||||| | | ||||| ||||||||||| ||||||||||| |||| | Sbjct 665473 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 665532 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065 || ||||||| ||||||||| || | | | | || | | | |||| |||| || | Sbjct 665533 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 665590 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 16124 ||||||||||||||| || || ||||| || ||| || | | ||| ||| ||| Sbjct 665591 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 665649 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || || || || |||||||||||||| || ||||| | | ||||| || Sbjct 665650 TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGAA-AT 665708 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || |||||| | ||||| ||||| || || || | ||||| || || Sbjct 665709 TGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGT 665768 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCT 16271 ||||| ||| | || ||| ||||| Sbjct 665769 TCCTGGAGGACCAACAAGAAGGACACCT 665796 >seq7 Length=28617404 Score = 134 bits (148), Expect = 2e-26 Identities = 303/446 (68%), Gaps = 12/446 (3%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| ||||| || ||||| | || ||| || || || | || || || || || Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367 Query 15948 ATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 ||||||| ||||| || ||| || |||| |||||||| || ||||||||||| || | Sbjct 3465366 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 3465309 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 16063 ||| ||||| | ||||||||| || | | | | || | | | |||| | || || Sbjct 3465308 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 3465251 Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGA 16122 ||||||||||||||||| || || || || || ||| || | | ||| ||| | Sbjct 3465250 GGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-A 3465192 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || || || || || || |||||||||||||| || ||||| | | | ||| Sbjct 3465191 GGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA- 3465133 Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 |||| || || |||||| | |||||| ||||| || ||| || |||||||| || Sbjct 3465132 ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCA 3465073 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 16301 || ||||| ||| || ||| ||||| ||||| ||| || | || | || Sbjct 3465072 GTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAAT 3465013 Query 16302 CTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||||| || | || || || || || Sbjct 3465012 CTCTCGGGCTTTTTCAGGAACTCAAC 3464987 >seq4 Length=30051516 Score = 109 bits (120), Expect = 7e-19 Identities = 215/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032 || ||||||||||| ||||| ||||| || ||||| || |||| |||||||| | | | Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || | ||||| | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152 | ||| || | || ||||| |||||||| || | | || ||||| || | Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875 Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 16212 |||| | |||||| || | | || | ||| || ||| ||||| | || || | Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 | | || | || || || ||||| || ||||| ||| |||| | | ||| |||| Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAGAGACAACCTT 3938995 Query 16273 GTGGAATCTTGGCGCC 16288 |||||||| || || Sbjct 3938996 TAGGAATCTTCGCCCC 3939011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620686075386480