Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq9 165 1e-35
seq6 159 4e-34
seq1022 158 2e-33
seq7 134 2e-26
seq4 109 7e-19
>seq9
Length=34148863
Score = 165 bits (182), Expect = 1e-35
Identities = 126/149 (85%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|| ||||| |||||| | |||| || || ||||| ||||| |||||||||||||| |||
Sbjct 1096829 TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCC 1096888
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
||||||||||| | ||||||||||||||| || |||||||| || ||| |||||| |||
Sbjct 1096889 TTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1096948
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCA 102319
||||||||||| ||||||||||| || ||
Sbjct 1096949 GAGCTTATCTCCCGTGACGAGGGCCTTCA 1096977
Score = 149 bits (164), Expect = 8e-31
Identities = 123/150 (82%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || ||||| ||| | || || || || || ||||| ||||||||||| ||||||
Sbjct 33079400 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTTCC 33079459
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
||||||||||| | ||||||||||| || || |||||||| || ||| ||||||||||
Sbjct 33079460 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 33079519
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| || ||||| || |||||||| ||||||
Sbjct 33079520 GAACTCATCTCCCGCGACGAGGGCCTCCAC 33079549
Score = 93.3 bits (102), Expect = 5e-14
Identities = 214/320 (67%), Gaps = 12/320 (4%)
Strand=Plus/Minus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032
|| ||||||||||||||||| ||||| || || || || |||| ||||| || | | |
Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959
Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
|| | || || | | ||| ||||||| |||||||| ||||| ||||| || ||||
Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901
Query 16093 ATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148
| ||| || ||||| | || || | |||||| || | | || ||||||
Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTC----TCGAATAAATCCCGGACCCTCGACGCCCCCACA 28871845
Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208
|| || |||| |||||| || | | || | || || |||||| || | ||
Sbjct 28871844 CCCACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCT 28871785
Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268
||||| | |||||||| || || || || || || || || ||| | | |||| |
Sbjct 28871784 CCCGCCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAA 28871725
Query 16269 CCTCGTGGAATCTTGGCGCC 16288
||| || ||||| || ||
Sbjct 28871724 CCTTTGGGGATCTTCGCCCC 28871705
>seq6
Length=34899179
Score = 159 bits (176), Expect = 4e-34
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || ||||||||| |||| || || || || ||||| ||||| ||||| || |||
Sbjct 4328575 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 4328634
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||||||||||| || |||||||| |||||| ||||||||||
Sbjct 4328635 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 4328694
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
||||| ||||| ||||||||||| || ||| || |||||
Sbjct 4328695 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 4328735
Score = 149 bits (164), Expect = 8e-31
Identities = 123/150 (82%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
|| || || ||||| ||| | || || || || || ||||| |||||||||| || |||
Sbjct 15336857 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTCC 15336916
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | ||||||||||||||||| |||||||| |||||| |||||| |||
Sbjct 15336917 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||| ||||| ||||||||||| ||||||
Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCAC 15337006
>seq1022
Length=749713
Score = 158 bits (174), Expect = 2e-33
Identities = 272/388 (70%), Gaps = 8/388 (2%)
Strand=Plus/Plus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
||||| || || || ||||| | || ||| || || || |||| || ||||| |||
Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472
Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007
|| |||| |||||||| | | ||||| ||||||||||| ||||||||||| |||| |
Sbjct 665473 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 665532
Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 16065
|| ||||||| ||||||||| || | | | | || | | | |||| |||| || |
Sbjct 665533 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 665590
Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 16124
||||||||||||||| || || ||||| || ||| || | | ||| ||| |||
Sbjct 665591 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 665649
Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184
|| || || || || || |||||||||||||| || ||||| | | ||||| ||
Sbjct 665650 TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGAA-AT 665708
Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243
|| || || |||||| | ||||| ||||| || || || | ||||| || ||
Sbjct 665709 TGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGT 665768
Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCT 16271
||||| ||| | || ||| |||||
Sbjct 665769 TCCTGGAGGACCAACAAGAAGGACACCT 665796
>seq7
Length=28617404
Score = 134 bits (148), Expect = 2e-26
Identities = 303/446 (68%), Gaps = 12/446 (3%)
Strand=Plus/Minus
Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947
||||| ||||| || ||||| | || ||| || || || | || || || || ||
Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367
Query 15948 ATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005
||||||| ||||| || ||| || |||| |||||||| || ||||||||||| || |
Sbjct 3465366 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 3465309
Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 16063
||| ||||| | ||||||||| || | | | | || | | | |||| | || ||
Sbjct 3465308 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 3465251
Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGA 16122
||||||||||||||||| || || || || || ||| || | | ||| ||| |
Sbjct 3465250 GGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-A 3465192
Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182
| || || || || || || |||||||||||||| || ||||| | | | |||
Sbjct 3465191 GGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA- 3465133
Query 16183 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241
|||| || || |||||| | |||||| ||||| || ||| || |||||||| ||
Sbjct 3465132 ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCA 3465073
Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 16301
|| ||||| ||| || ||| ||||| ||||| ||| || | || | ||
Sbjct 3465072 GTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAAT 3465013
Query 16302 CTCTCAGGTTGCTTAAGAAAATCCAC 16327
||||| || | || || || || ||
Sbjct 3465012 CTCTCGGGCTTTTTCAGGAACTCAAC 3464987
>seq4
Length=30051516
Score = 109 bits (120), Expect = 7e-19
Identities = 215/316 (68%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 16032
|| ||||||||||| ||||| ||||| || ||||| || |||| |||||||| | | |
Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757
Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092
|| | ||||| | | ||| ||||||| |||||||| ||||| ||||| || ||||
Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815
Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 16152
| ||| || | || ||||| |||||||| || | | || ||||| || |
Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875
Query 16153 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 16212
|||| | |||||| || | | || | ||| || ||| ||||| | || || |
Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935
Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272
| | || | || || || ||||| || ||||| ||| |||| | | ||| ||||
Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAGAGACAACCTT 3938995
Query 16273 GTGGAATCTTGGCGCC 16288
|||||||| || ||
Sbjct 3938996 TAGGAATCTTCGCCCC 3939011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620686075386480
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