Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq9 114 2e-20
seq6 109 6e-19
>seq9
Length=34148863
Score = 114 bits (126), Expect = 2e-20
Identities = 197/286 (69%), Gaps = 0/286 (0%)
Strand=Plus/Minus
Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566
|||||| || || || || ||||| ||||| || |||| || || |||||||| ||
Sbjct 1096978 ATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 1096919
Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626
| ||||| ||||||||||| || || || ||||| |||||||| ||||| |||||
Sbjct 1096918 GCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACA 1096859
Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686
|||||| |||| | ||||| ||||| | | || || | ||| || |||||
Sbjct 1096858 GGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTCAATCCAGCGCAGGGCCCA 1096799
Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746
|| |||||| || | | ||||||| || | ||||||| ||| || | |||| ||
Sbjct 1096798 GTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAGACGGGTCTTCTC 1096739
Query 119747 AGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCA 119792
|| ||||| || || | || | ||| ||||| |||||
Sbjct 1096738 GTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATCTCA 1096693
Score = 104 bits (114), Expect = 3e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || |||||||| || || |||| || || |||||||| ||
Sbjct 33079548 TGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 33079489
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| |||||| ||||| ||||| || || || || || |||||||||||||| || |||
Sbjct 33079488 CGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATGCCCTCGACGCAG 33079429
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687
||||| || | || ||||| || || | | || |||| ||| || ||||||
Sbjct 33079428 GCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGAGGAATCGATCCAGCGAAGGGCCCAG 33079369
Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734
| |||||| || | | | |||||| || | |||||| | ||| ||
Sbjct 33079368 TCGGCCTTTCGGGCGACGGCGGGGACGGTATCGATGGCGTGGAAGAG 33079322
Score = 86.0 bits (94), Expect = 7e-12
Identities = 248/379 (65%), Gaps = 2/379 (1%)
Strand=Plus/Minus
Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650
||| || ||||| ||||| | ||||| ||||| ||||| || | |||||||||| |
Sbjct 28872019 GAACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACC 28871960
Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710
|| | | || ||| | || | | || || || ||||| ||||||||||| || || |
Sbjct 28871959 GCCAAGC-CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901
Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770
| ||| || || || | ||||| | || || || | | ||| || ||||| |
Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCA 28871841
Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830
|||||| ||| ||||| | | || | ||| | |||||| || | ||| || |
Sbjct 28871840 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 28871781
Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890
| | ||||| || || || || || || || || |||| || | | ||| ||
Sbjct 28871780 CCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAACCTT 28871721
Query 11891 GGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCT 11950
||||||||| || || | ||| || || ||||| ||||||||||| | |
Sbjct 28871720 TGGGGATCTTCGCCCCCAGAGCCGTGTACTTGTCCGGGTTCTTCAGGAAGTCCACCACTT 28871661
Query 11951 CCTCAAGTTCCTCCTTGGC 11969
||| || || ||||||
Sbjct 28871660 CCTGCAGCTCGAGCTTGGC 28871642
>seq6
Length=34899179
Score = 109 bits (120), Expect = 6e-19
Identities = 164/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
||||| || || || || ||||||||||| || |||| || || |||||||| ||
Sbjct 4328723 TGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGGCCG 4328664
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| |||||||| || || || || || ||||||||||| || |||
Sbjct 4328663 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGCCCTCGACGCAG 4328604
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCG--AGACTTGTCGAACCACTTGAGAGCC 119684
||||| |||| || ||||| || || | | || |||| || | ||| | |||||||
Sbjct 4328603 GCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGAAGAC---TCAATCCATTGGAGAGCC 4328547
Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734
|| | |||||| || | | | ||||| || | ||| || | ||| ||
Sbjct 4328546 CATTCGGCCTTCCGGGCGACGGCAGGGACGGTGTCGATCGCGTGGAAGAG 4328497
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567
|| || || || || || ||||||||||| || |||| || || |||||||| |||
Sbjct 15337005 TGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCCT 15336946
Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627
| ||||| ||||| |||||||| || || || || ||||||| ||||| || |||
Sbjct 15336945 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCAG 15336886
Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653
||||| || | || ||||| || ||
Sbjct 15336885 GCGAAGGCAACGAGGCGCTCGGCGAA 15336860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588922557790200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |