Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9 114 2e-20 seq6 109 6e-19 >seq9 Length=34148863 Score = 114 bits (126), Expect = 2e-20 Identities = 197/286 (69%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 |||||| || || || || ||||| ||||| || |||| || || |||||||| || Sbjct 1096978 ATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 1096919 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | ||||| ||||||||||| || || || ||||| |||||||| ||||| ||||| Sbjct 1096918 GCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACA 1096859 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 |||||| |||| | ||||| ||||| | | || || | ||| || ||||| Sbjct 1096858 GGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTCAATCCAGCGCAGGGCCCA 1096799 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTC 119746 || |||||| || | | ||||||| || | ||||||| ||| || | |||| || Sbjct 1096798 GTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGAGACGGGTCTTCTC 1096739 Query 119747 AGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCA 119792 || ||||| || || | || | ||| ||||| ||||| Sbjct 1096738 GTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATCTCA 1096693 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || |||||||| || || |||| || || |||||||| || Sbjct 33079548 TGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCG 33079489 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | |||||| ||||| ||||| || || || || || |||||||||||||| || ||| Sbjct 33079488 CGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATGCCCTCGACGCAG 33079429 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAG 119687 ||||| || | || ||||| || || | | || |||| ||| || |||||| Sbjct 33079428 GCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGAGGAATCGATCCAGCGAAGGGCCCAG 33079369 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 | |||||| || | | | |||||| || | |||||| | ||| || Sbjct 33079368 TCGGCCTTTCGGGCGACGGCGGGGACGGTATCGATGGCGTGGAAGAG 33079322 Score = 86.0 bits (94), Expect = 7e-12 Identities = 248/379 (65%), Gaps = 2/379 (1%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG-AGG 11650 ||| || ||||| ||||| | ||||| ||||| ||||| || | |||||||||| | Sbjct 28872019 GAACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACC 28871960 Query 11651 GCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 || | | || ||| | || | | || || || ||||| ||||||||||| || || | Sbjct 28871959 GCCAAGC-CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | ||| || || || | ||||| | || || || | | ||| || ||||| | Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCA 28871841 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAG 11830 |||||| ||| ||||| | | || | ||| | |||||| || | ||| || | Sbjct 28871840 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 28871781 Query 11831 CGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCAC 11890 | | ||||| || || || || || || || || |||| || | | ||| || Sbjct 28871780 CCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAACCTT 28871721 Query 11891 GGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCT 11950 ||||||||| || || | ||| || || ||||| ||||||||||| | | Sbjct 28871720 TGGGGATCTTCGCCCCCAGAGCCGTGTACTTGTCCGGGTTCTTCAGGAAGTCCACCACTT 28871661 Query 11951 CCTCAAGTTCCTCCTTGGC 11969 ||| || || |||||| Sbjct 28871660 CCTGCAGCTCGAGCTTGGC 28871642 >seq6 Length=34899179 Score = 109 bits (120), Expect = 6e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 ||||| || || || || ||||||||||| || |||| || || |||||||| || Sbjct 4328723 TGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGGCCG 4328664 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || || ||||||||||| || ||| Sbjct 4328663 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGCCCTCGACGCAG 4328604 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCG--AGACTTGTCGAACCACTTGAGAGCC 119684 ||||| |||| || ||||| || || | | || |||| || | ||| | ||||||| Sbjct 4328603 GCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGAAGAC---TCAATCCATTGGAGAGCC 4328547 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 || | |||||| || | | | ||||| || | ||| || | ||| || Sbjct 4328546 CATTCGGCCTTCCGGGCGACGGCAGGGACGGTGTCGATCGCGTGGAAGAG 4328497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| ||| Sbjct 15337005 TGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCCT 15336946 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || ||||||| ||||| || ||| Sbjct 15336945 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCAG 15336886 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| || | || ||||| || || Sbjct 15336885 GCGAAGGCAACGAGGCGCTCGGCGAA 15336860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588922557790200