Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq7 152 6e-32 seq9 149 7e-31 seq1022 147 3e-30 seq6 129 7e-25 seq4 105 8e-18 >seq7 Length=28617404 Score = 152 bits (168), Expect = 6e-32 Identities = 258/367 (70%), Gaps = 10/367 (3%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| ||||| || ||||| | || ||| || || || | || || ||||| || Sbjct 3465426 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCCAGAATGTCTGCACGGTTGGTCGCTGCA 3465367 Query 9255 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 ||||||| ||||| || ||| || |||| |||||||| || |||||||| || || | Sbjct 3465366 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 3465309 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9370 ||| ||||| | ||||||||| || | | | | || | | | |||| | || || Sbjct 3465308 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 3465251 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||||||||||| || |||||||| || ||| || ||| | | || || Sbjct 3465250 GGCATCAATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAAAG 3465191 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || ||||| | | || || |||||||||||||| || ||||| | | | ||| | Sbjct 3465190 GTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA-A 3465132 Query 9491 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9549 ||| || || |||||| | |||||| ||||| || ||| || |||||||| || | Sbjct 3465131 TTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAGAGTCTTTCCAG 3465072 Query 9550 TACCTGG 9556 | ||||| Sbjct 3465071 TTCCTGG 3465065 >seq9 Length=34148863 Score = 149 bits (164), Expect = 7e-31 Identities = 242/343 (71%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 117096 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 117155 ||| || || || | ||| |||| ||||||| | ||| ||| |||||| |||| Sbjct 33079738 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 33079679 Query 117156 GAGATT-ACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 117214 |||| ||| ||||||||||| ||| |||| | ||| || ||||| || || | Sbjct 33079678 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAA 33079620 Query 117215 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACG 117273 |||| || ||| | ||| | | | || || | || || | |||| | Sbjct 33079619 CGATTGCCCGGACCGCTTCCTCGGACAGCTTGTTGCGGAGGAGGCT-GTAGAGGAGGCAG 33079561 Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || || |||||| ||||| || ||||| || ||||| || |||||| ||||| Sbjct 33079560 GCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCG 33079501 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || || ||||| | ||| | ||||||||||| || |||||||||||||| Sbjct 33079500 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATG 33079441 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 ||||| || || || || |||| ||||||||||||||||||| Sbjct 33079440 CCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 33079398 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || ||||| || ||||| ||||| || || |||||| || || |||||||| || Sbjct 1096977 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1096918 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 |||||||| | |||| | ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 1096917 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 1096858 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || || | || |||||||| || |||| Sbjct 1096857 GCGAAGGCGACAATTCGCTCGGCAAACGAGC 1096827 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || ||||||||||||||||| || || || || || || |||| ||||| || | | | Sbjct 28872018 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 28871959 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || | || || | | ||| ||||||| |||||||| ||||| ||||| ||||| | Sbjct 28871958 CCAAGC--CCGGCCCCCCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 28871901 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| || | || | || || | ||| || ||||| || |||||||| | Sbjct 28871900 AAGGTGCCTTAGCCTTCGCTTTCTCGAATAAATCCCGGACCCTCGACGCCCCCACACCCA 28871841 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | |||| |||||| || | | || | || || |||||| || | || |||| Sbjct 28871840 CGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCG 28871781 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | | |||||||| || || || || || || || || Sbjct 28871780 CCACAGCTCGGGCCAGCAGCGTTTTGCCGGTGCCGGG 28871744 >seq1022 Length=749713 Score = 147 bits (162), Expect = 3e-30 Identities = 267/386 (69%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 ||||| || || || ||||| | || ||| || || || |||| || || || ||| Sbjct 665413 TCAAATCGCCCAGGTCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 665472 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| |||||||| | ||||| ||||||||||| |||||||| || |||| | Sbjct 665473 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 665532 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9372 || ||||||| ||||||||| || | | | | || | | | |||| |||| || | Sbjct 665533 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 665590 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||||||||||| || ||||| || || ||| || ||| | | || |||| Sbjct 665591 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGAT 665650 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| | || || |||||||||||||| || ||||| | | ||||| ||| Sbjct 665651 CACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCGGAA-ATT 665709 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || |||||| | ||||| ||||| || || || | ||||| || || Sbjct 665710 GAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGTT 665769 Query 9552 CCTGGCTTACCCGCGAGGAGGGCACC 9577 ||||| ||| | || ||| |||| Sbjct 665770 CCTGGAGGACCAACAAGAAGGACACC 665795 >seq6 Length=34899179 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || ||||||||| || || |||||||| || Sbjct 15337006 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGCATGAGGCC 15336947 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || ||||||||||||| ||||| || || Sbjct 15336946 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCCTCGACGCA 15336887 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 || || |||| |||||||||||||| ||| Sbjct 15336886 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 15336856 Score = 123 bits (136), Expect = 3e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| || ||||| || ||||| || || || || |||||| || || Sbjct 4328735 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 4328676 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||| || |||||||| | ||| | || |||||||| || |||||||| ||||| Sbjct 4328675 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 4328616 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAAC 117453 ||||| || || || || || | || |||||||||||||||| || | |||| | Sbjct 4328615 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCGGA---AGACTCAATC 4328559 Query 117454 CATTTCATTGCCCATTTCGCCTTC 117477 |||| | ||||||| |||||| Sbjct 4328558 CATTGGAGAGCCCATTCGGCCTTC 4328535 >seq4 Length=30051516 Score = 105 bits (116), Expect = 8e-18 Identities = 214/316 (68%), Gaps = 4/316 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || ||||||||||| ||||| || || || ||||| || |||| |||||||| | | | Sbjct 3938698 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 3938757 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || | ||||| | | ||| ||||||| |||||||| ||||| ||||| ||||| | Sbjct 3938758 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 3938815 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| || | || | ||||| ||||| || ||||| || ||||| || | Sbjct 3938816 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 3938875 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||| | |||||| || | | || | ||| || ||| ||||| | || || | Sbjct 3938876 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 3938935 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | || | || || || ||||| || ||||| ||| |||| | | ||| ||| Sbjct 3938936 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAGAGACAACCTT 3938995 Query 9580 GTGGAATCTTGGCGCC 9595 |||||||| || || Sbjct 3938996 TAGGAATCTTCGCCCC 3939011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589927266617160