Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq1382 163 3e-35 seq9 129 7e-25 seq1063 123 3e-23 seq10 118 1e-21 seq4 109 7e-19 seq1290 87.8 2e-12 seq1024 87.8 2e-12 seq480 87.8 2e-12 seq11 87.8 2e-12 seq2320 82.4 9e-11 >seq1382 Length=172696 Score = 163 bits (180), Expect = 3e-35 Identities = 246/343 (72%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 180267 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCA--GGTGTCTTCGGCGGTT 180324 ||||||||||| ||||| || || ||||| | || |||| ||||| |||||||| | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 180325 CACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTG 180384 | || ||| || ||||| ||||| |||| |||||| || | | |||||||||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 180385 AAACTGAGTCC-CAGAACTACGGTTACAAGTTTGGTCAAGAAGAAG----AGACCTACAA 180439 ||| || || || | | ||||||| || ||||||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 180440 CA-----TCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTC 180494 | | || ||||| ||||| || || | || ||||| |||| ||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 180495 AACAACTCCCGTTCACTTC---ACTTC--TTCCTGGCAGCATGGCCTGTCGTTGGCATCT 180549 |||||||| || | ||||| || | ||| ||||||| ||||| || |||| |||| Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 180550 GGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAA 180592 || |||| || | || | ||||||||||| ||||||||||| Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 129 bits (142), Expect = 7e-25 Identities = 181/246 (74%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 180075 TACATGGGTCGTGAGTGGGAACTTTCTTATCGCT-TGGGTATGCGCCCCTGGATCTGC-G 180132 ||||| | || ||||| |||||| || || | |||||||||| || ||||| ||| | Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTT-TCTATCTGGGTATGCGTCCTTGGAT-TGCTG 1506974 Query 180133 TAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTC 180192 | |||||||| ||||| || || || || ||||||| ||| | |||| ||| | |||| Sbjct 1506975 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTC 1507034 Query 180193 AAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGC-TT 180251 |||| |||||||| | ||||| | || || ||| ||| ||||||| |||| || Sbjct 1507035 AAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCAT-TTCAACTTCATGTATT 1507093 Query 180252 GTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGT 180311 || || | ||||| ||||||||||| ||||| | | |||||| | || ||| | ||| Sbjct 1507094 GTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGT 1507153 Query 180312 GTCTTC 180317 || ||| Sbjct 1507154 GTATTC 1507159 >seq1063 Length=431445 Score = 123 bits (136), Expect = 3e-23 Identities = 231/335 (69%), Gaps = 21/335 (6%) Strand=Plus/Minus Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272 ||||| | || || ||||| || ||| ||| |||| |||| || | ||||| |||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCA--GGTGTCTTCGGCGGTTCACTGT 180330 ||||| ||||| | || |||||| | || ||||| ||||| |||||| | || Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCTA----GT 54104 Query 180331 TCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTG 180390 || ||||| ||||| |||| ||||| | | | |||| |||||||| | Sbjct 54103 ACT-----ATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049 Query 180391 AGTCCCAG--AACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCT-ACAACA-----T 180442 | ||| | | | | || || || ||| |||| |||||||| | |||| | | Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991 Query 180443 CGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTC 180502 || ||||| ||||| || || | || |||||||||| ||||| ||||||||||| Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931 Query 180503 CCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 180537 ||||| | || |||||| |||| || ||||||| Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 118 bits (130), Expect = 1e-21 Identities = 230/335 (69%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 180213 ATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 180272 ||||| | || || ||||| || ||||||| |||| |||| ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 180273 ATCCTGATGCACCCCTTCCACATGCTGGGAGTAG--CAGGTGTCTTCGGCGGTTCACTGT 180330 ||||| ||||| | || |||||| | || |||| | ||||| |||||| | || Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGC----CCTAGT 4333016 Query 180331 TCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTG 180390 || ||||| ||||| |||| | ||||| | | | |||| |||||||| | Sbjct 4333017 ACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 180391 AGTCCCAG--AACTACGGTTACAAGTTTGGTCAAGAAGAAGAGAC-CTACAA-----CAT 180442 | ||| | | | | || || || ||| |||| |||||||| ||||| ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 180443 CGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTC 180502 || | ||| ||||| || || | || ||| || ||| ||||| ||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 180503 CCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 180537 ||| || |||||| |||| || ||||||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq4 Length=30051516 Score = 109 bits (120), Expect = 7e-19 Identities = 122/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 180570 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAA 180629 ||||||||||| |||||||| || |||||||| |||||||| ||| | |||| |||| Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827 Query 180630 GGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGT----ATGGA 180685 |||||||| | || || ||| || | |||| || ||| ||| ||| ||||| Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885 Query 180686 AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 180727 ||| || || || ||||||||||| |||||||| | ||||| Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1290 Length=351781 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 147155 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 147096 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 147095 CCTACTTGGGGAG 147083 >seq1024 Length=717246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 180642 AACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 180701 ||||||||||| || | ||||||| ||| || ||||||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 180702 AATGCTCACAACTTCCCACTTGACCT 180727 ||||||||||||||||| || ||||| Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 >seq480 Length=3896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 3833 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 3774 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 3773 CCTACTTGGGGAG 3761 >seq11 Length=25514024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 127/174 (73%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCT-CCATATTCCTGCCGTGCCGGTGCC 171965 |||||||| | || || || || || || ||| || || || |||||||||||||| Sbjct 15749120 TTCTGGACTCAGCTGAGACGGCAGGAGTGGA-GCTGCCGTACTCATGCCGTGCCGGTGCG 15749062 Query 171966 TGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTC 172025 |||||||||||||| || | | | | |||| | || ||||||||||| ||| ||| Sbjct 15749061 TGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCCTTC 15749002 Query 172026 CTTGATGATGATCAAATGGACGCAGGATT-CGTTCTGACCTGTGTTGCTTATCC 172078 ||||||||| || || | ||| || | | ||||| |||||||| ||||| Sbjct 15749001 CTTGATGATTCACAGAT-TTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCC 15748949 >seq2320 Length=73522 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 ||| |||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 47437 TTCTTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 47496 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 47497 CCTACTTGGGGAG 47509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610341414120360