Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq9 113 5e-20 seq10 93.3 5e-14 seq3 89.7 6e-13 seq1382 82.4 9e-11 >seq9 Length=34148863 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTA 169824 || |||||||||||||| ||||||||| || || || || | ||||| ||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884 ||||| | ||||| ||||||| || ||||||||||||||||| |||| || || Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 169885 GGTACTTTCAACTTTATGT-TCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 169943 | | ||||||||| |||| | || || | ||||| || ||||| || ||||||| | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 169944 CCACATGGCAGGAGTA 169959 |||||| ||| ||| Sbjct 1507132 TCACATGTTAGGTGTA 1507147 >seq10 Length=33665772 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| |||| || || |||||||||||||| ||| | || ||||| ||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 169961 || ||||| || ||||||| || |||||| ||| ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGC 4332995 >seq3 Length=30470407 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| || ||||||||| | |||||||||||||| || |||||||| || || Sbjct 26200728 TGGAGCAGATGTCTGCCATCTAAACCTCCATAAAACATTCTGCATCCCACATGGTGGAGG 26200669 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||| | ||||| || ||||| Sbjct 26200668 TGGTCCTGGAATGGGTCCCATTGGTGT 26200642 >seq1382 Length=172696 Score = 82.4 bits (90), Expect = 9e-11 Identities = 224/337 (66%), Gaps = 17/337 (5%) Strand=Plus/Plus Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCA--GGAATGTTCGGAGGAT 169978 || ||||| || |||||||| || ||||| ||| |||| || | ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAG 170038 | ||||| || ||||||||||| | || || || | | ||||| ||||| || | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 170039 AGCAAGAGTCA-CAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACA----TACAA 170093 | | || || || | | ||||| | ||||| |||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 170094 CATAGTA-----GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTC 170148 | |||| || || || ||||| || | || | ||| |||| |||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 170149 AACAACTCAAG--AAGTCT--ACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 170204 |||||||| | | ||| ||| ||| | |||| || || ||| | || | || Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 170205 GTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 170241 | | || || | ||||| |||| ||||| |||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579160243678560