Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq9 113 5e-20
seq10 93.3 5e-14
seq3 89.7 6e-13
seq1382 82.4 9e-11
>seq9
Length=34148863
Score = 113 bits (124), Expect = 5e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 169765 GGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTA 169824
|| |||||||||||||| ||||||||| || || || || | ||||| |||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 169825 TTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 169884
||||| | ||||| ||||||| || ||||||||||||||||| |||| || ||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 169885 GGTACTTTCAACTTTATGT-TCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 169943
| | ||||||||| |||| | || || | ||||| || ||||| || ||||||| |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 169944 CCACATGGCAGGAGTA 169959
|||||| ||| |||
Sbjct 1507132 TCACATGTTAGGTGTA 1507147
>seq10
Length=33665772
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920
||||||||||| |||| || || |||||||||||||| ||| | || ||||| |||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 169961
|| ||||| || ||||||| || |||||| ||| |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGC 4332995
>seq3
Length=30470407
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077
||| |||||||| || ||||||||| | |||||||||||||| || |||||||| || ||
Sbjct 26200728 TGGAGCAGATGTCTGCCATCTAAACCTCCATAAAACATTCTGCATCCCACATGGTGGAGG 26200669
Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104
|||||||| | ||||| || |||||
Sbjct 26200668 TGGTCCTGGAATGGGTCCCATTGGTGT 26200642
>seq1382
Length=172696
Score = 82.4 bits (90), Expect = 9e-11
Identities = 224/337 (66%), Gaps = 17/337 (5%)
Strand=Plus/Plus
Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCA--GGAATGTTCGGAGGAT 169978
|| ||||| || |||||||| || ||||| ||| |||| || | ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAG 170038
| ||||| || ||||||||||| | || || || | | ||||| ||||| || |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 170039 AGCAAGAGTCA-CAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACA----TACAA 170093
| | || || || | | ||||| | ||||| |||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 170094 CATAGTA-----GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTC 170148
| |||| || || || ||||| || | || | ||| |||| |||||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 170149 AACAACTCAAG--AAGTCT--ACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 170204
|||||||| | | ||| ||| ||| | |||| || || ||| | || | ||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 170205 GTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 170241
| | || || | ||||| |||| ||||| ||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579160243678560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |