Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015281.1
Length=179563
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 127 2e-24
seq1063 116 4e-21
seq10 116 4e-21
seq9 109 6e-19
seq1035 100 3e-16
seq4 98.7 1e-15
seq1042 91.5 2e-13
>seq1382
Length=172696
Score = 127 bits (140), Expect = 2e-24
Identities = 236/342 (69%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 168382 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 168439
||||| || || |||||||| || | ||| | || | ||| || ||||| || |||
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 168440 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 168499
| || ||||||||||| || ||||| || ||| | | | || || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 168500 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACA----TACAA 168554
||| |||||| || | | ||||||| ||||| |||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 168555 CA-----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 168609
| | ||||| ||||||||||| || | || |||||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 168610 AACAACTCCCGCTCCTT----GCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTG 168665
|||||||| |||| ||| || ||| | || || ||||| ||| | || |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 168666 GTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAA 168707
| |||| || | || | ||| ||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 116 bits (128), Expect = 4e-21
Identities = 232/340 (68%), Gaps = 19/340 (6%)
Strand=Plus/Minus
Query 168322 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 168381
|||| ||||| | ||||| || || || ||| ||| |||| | || || | || ||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 168382 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 168439
||||| || || ||||||| || || ||| | || || ||| || ||||| ||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 54108
Query 168440 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 168499
|||| ||||||| || ||||| |||| | || | || || | ||||
Sbjct 54107 -------TAGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 168500 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAACA- 168556
||| ||||||| | | | | | || ||||| |||| ||||| || | |||| |
Sbjct 54054 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 53996
Query 168557 ----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 168612
| ||||| ||||||||||| || | || |||||||||||||| ||| ||||||
Sbjct 53995 AGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAAC 53936
Query 168613 AACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 168652
||||| || || || || |||||| | ||||| |||||||
Sbjct 53935 AACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 116 bits (128), Expect = 4e-21
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 168322 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 168381
|||| ||||| | ||||| || || || ||||||| |||| | || ||||| || ||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 168382 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 168439
||||| || || ||||||| || || ||| | || || ||| || ||||| ||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 4333012
Query 168440 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 168499
|||| ||||||| || ||||| | |||| | || | || || | ||||
Sbjct 4333013 -------TAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 168500 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAA--- 168554
||| ||||||| | | | | | || ||||| |||| ||||| || | ||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124
Query 168555 --CATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 168612
||| |||| ||||||||||| || | || |||| || |||||| ||| ||||||
Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184
Query 168613 AACTCCCGCTCCTTG-CACTTCTTCCTTGCTGCATGGCCTG 168652
|||| | || |||| || |||||| | ||||| |||||||
Sbjct 4333185 AACT-CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 109 bits (120), Expect = 6e-19
Identities = 150/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 168226 GGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTA 168285
||||||||||| ||||| ||||||||| || || || || || || || | ||| ||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 168286 TTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCA 168345
||| | | || ||| | |||||||| ||||||||||||| ||||| | ||||| ||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 168346 GGAACATTCAACTACATGT-TGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTT 168404
| | ||||||| ||||| | || || | || || ||||| || || ||||||| |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 168405 CCATATGCTCGGCGTTGCTGGGGTATT 168431
|| ||| | || || |||| |||||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATT 1507158
>seq1035
Length=594915
Score = 100 bits (110), Expect = 3e-16
Identities = 174/251 (69%), Gaps = 14/251 (6%)
Strand=Plus/Plus
Query 169832 AACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTG 169891
|| ||||||||||| || || | |||||||| || |||| | || |||| || ||
Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTG 237105
Query 169892 CTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCA 169951
|| | ||||| |||||| | ||| | ||||| || | ||||| ||| | |||
Sbjct 237106 CTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCA 237161
Query 169952 AATACTTTCAAGGCGT----TTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 170007
||||| | | ||| || | | || || | |||||||||||||| ||||||||
Sbjct 237162 AATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCAC 237221
Query 170008 TGCAAACCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGTTGG 170062
||| ||||| || ||||| || ||| || || |||| ||||| || || ||||||
Sbjct 237222 TGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG 237281
Query 170063 CTTCATTTTTT 170073
| | || ||||
Sbjct 237282 CCTTATGTTTT 237292
>seq4
Length=30051516
Score = 98.7 bits (108), Expect = 1e-15
Identities = 113/151 (75%), Gaps = 6/151 (4%)
Strand=Plus/Plus
Query 168687 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 168746
||| ||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||
Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829
Query 168747 TCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGT----ATGGAAG 168802
|||||| | || || ||| ||| | | || || ||| ||| ||| |||||||
Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887
Query 168803 TTATGCATGAGCGTAACGCACACAACTTCCC 168833
| || ||||| ||||| || || ||||||||
Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCC 1282918
>seq1042
Length=564079
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363
|||||||| ||| | || |||| ||||| | ||||||||| || || ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423
| || ||||| ||||||||||| || || ||||| || || | ||| | || |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 168424 GGG 168426
|||
Sbjct 550740 GGG 550738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574421473701720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |