Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1382 127 2e-24 seq1063 116 4e-21 seq10 116 4e-21 seq9 109 6e-19 seq1035 100 3e-16 seq4 98.7 1e-15 seq1042 91.5 2e-13 >seq1382 Length=172696 Score = 127 bits (140), Expect = 2e-24 Identities = 236/342 (69%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 168382 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 168439 ||||| || || |||||||| || | ||| | || | ||| || ||||| || ||| Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 168440 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 168499 | || ||||||||||| || ||||| || ||| | | | || || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 168500 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACA----TACAA 168554 ||| |||||| || | | ||||||| ||||| |||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 168555 CA-----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 168609 | | ||||| ||||||||||| || | || |||||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 168610 AACAACTCCCGCTCCTT----GCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTG 168665 |||||||| |||| ||| || ||| | || || ||||| ||| | || ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 168666 GTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAA 168707 | |||| || | || | ||| ||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 116 bits (128), Expect = 4e-21 Identities = 232/340 (68%), Gaps = 19/340 (6%) Strand=Plus/Minus Query 168322 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 168381 |||| ||||| | ||||| || || || ||| ||| |||| | || || | || || Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 168382 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 168439 ||||| || || ||||||| || || ||| | || || ||| || ||||| || Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 54108 Query 168440 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 168499 |||| ||||||| || ||||| |||| | || | || || | |||| Sbjct 54107 -------TAGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 168500 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAACA- 168556 ||| ||||||| | | | | | || ||||| |||| ||||| || | |||| | Sbjct 54054 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 53996 Query 168557 ----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 168612 | ||||| ||||||||||| || | || |||||||||||||| ||| |||||| Sbjct 53995 AGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAAC 53936 Query 168613 AACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 168652 ||||| || || || || |||||| | ||||| ||||||| Sbjct 53935 AACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 116 bits (128), Expect = 4e-21 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 168322 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 168381 |||| ||||| | ||||| || || || ||||||| |||| | || ||||| || || Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 168382 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 168439 ||||| || || ||||||| || || ||| | || || ||| || ||||| || Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 4333012 Query 168440 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 168499 |||| ||||||| || ||||| | |||| | || | || || | |||| Sbjct 4333013 -------TAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 168500 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAA--- 168554 ||| ||||||| | | | | | || ||||| |||| ||||| || | |||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124 Query 168555 --CATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 168612 ||| |||| ||||||||||| || | || |||| || |||||| ||| |||||| Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184 Query 168613 AACTCCCGCTCCTTG-CACTTCTTCCTTGCTGCATGGCCTG 168652 |||| | || |||| || |||||| | ||||| ||||||| Sbjct 4333185 AACT-CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 109 bits (120), Expect = 6e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 168226 GGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTA 168285 ||||||||||| ||||| ||||||||| || || || || || || || | ||| || Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 168286 TTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCA 168345 ||| | | || ||| | |||||||| ||||||||||||| ||||| | ||||| || Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 168346 GGAACATTCAACTACATGT-TGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTT 168404 | | ||||||| ||||| | || || | || || ||||| || || ||||||| | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 168405 CCATATGCTCGGCGTTGCTGGGGTATT 168431 || ||| | || || |||| ||||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATT 1507158 >seq1035 Length=594915 Score = 100 bits (110), Expect = 3e-16 Identities = 174/251 (69%), Gaps = 14/251 (6%) Strand=Plus/Plus Query 169832 AACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTG 169891 || ||||||||||| || || | |||||||| || |||| | || |||| || || Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTG 237105 Query 169892 CTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCA 169951 || | ||||| |||||| | ||| | ||||| || | ||||| ||| | ||| Sbjct 237106 CTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCA 237161 Query 169952 AATACTTTCAAGGCGT----TTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 170007 ||||| | | ||| || | | || || | |||||||||||||| |||||||| Sbjct 237162 AATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCAC 237221 Query 170008 TGCAAACCGCTTCTGGTCGCAGATC-----TTCGGTATTGCGTTTTCTAACAAGCGTTGG 170062 ||| ||||| || ||||| || ||| || || |||| ||||| || || |||||| Sbjct 237222 TGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG 237281 Query 170063 CTTCATTTTTT 170073 | | || |||| Sbjct 237282 CCTTATGTTTT 237292 >seq4 Length=30051516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 168687 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 168746 ||| ||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||| Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829 Query 168747 TCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGT----ATGGAAG 168802 |||||| | || || ||| ||| | | || || ||| ||| ||| ||||||| Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887 Query 168803 TTATGCATGAGCGTAACGCACACAACTTCCC 168833 | || ||||| ||||| || || |||||||| Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCC 1282918 >seq1042 Length=564079 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 168304 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 168363 |||||||| ||| | || |||| ||||| | ||||||||| || || ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 168364 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 168423 | || ||||| ||||||||||| || || ||||| || || | ||| | || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 168424 GGG 168426 ||| Sbjct 550740 GGG 550738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574421473701720