Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq1382 145 8e-30 seq9 134 2e-26 seq1063 114 1e-20 seq10 109 6e-19 seq4 98.7 1e-15 seq1024 84.2 2e-11 >seq1382 Length=172696 Score = 145 bits (160), Expect = 8e-30 Identities = 240/342 (70%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 164304 CACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTTGGCGGTT 164361 ||||||||||| ||||| || || | ||| | || | ||| || ||||| ||||| | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 164362 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCG 164421 | || |||||||| ||||| ||||| |||| || ||| || | | |||||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 164422 AAACTGAGTCC-CAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACA----TACAA 164476 ||| || || || | | ||||||| || ||||||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 164477 CA-----TTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTC 164531 | |||| || ||||| ||||| || | || ||||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 164532 AACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTG 164587 |||||||| || ||| | || ||| | || || ||||| ||| |||| ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 164588 GTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAA 164629 | |||| || | ||| || ||| ||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 134 bits (148), Expect = 2e-26 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171 ||||| | || ||||| ||||| || | ||| |||||||||||||||||| |||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231 || || || || || |||||||| || | || || ||| || |||| ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 164232 GGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGT-TGGT 164290 || |||||||| | ||||| | || || ||| ||| ||||||| ||||| | || Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 || | ||||| ||||||||||| ||||| | | || ||| | || || |||| || Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 164351 ATT 164353 ||| Sbjct 1507156 ATT 1507158 >seq1063 Length=431445 Score = 114 bits (126), Expect = 1e-20 Identities = 228/335 (68%), Gaps = 21/335 (6%) Strand=Plus/Minus Query 164250 ATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAAC 164309 ||||| | || || ||||| || ||| ||| |||| | || || | ||||| |||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 164310 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTTGGCGGTTCTCTGT 164367 ||||| ||||| | || || ||| | || || ||| || ||||| ||| | Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT------- 54107 Query 164368 TCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTG 164427 ||| | ||||| ||||| |||| |||| | | | |||| ||| |||| | Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049 Query 164428 AGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACAT-ACAACA-----T 164479 | ||| | | | | || || || ||| |||| ||||| || | |||| | | Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991 Query 164480 TGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTC 164539 ||| || ||||| ||||| || | || ||||||||||||| ||| ||||||||||| Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931 Query 164540 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 164574 ||||| || || |||||| | ||||| ||||||| Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 109 bits (120), Expect = 6e-19 Identities = 226/335 (67%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 164250 ATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAAC 164309 ||||| | || || ||||| || ||||||| |||| | || ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 164310 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTG--CTGGCGTATTTGGCGGTTCTCTGT 164367 ||||| ||||| | || || ||| | || || | |||| ||||| ||| | Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT------- 4333013 Query 164368 TCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTG 164427 ||| | ||||| ||||| |||| | |||| | | | |||| ||| |||| | Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 164428 AGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC------ATACAACAT 164479 | ||| | | | | || || || ||| |||| ||||| || ||| | ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 164480 TGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTC 164539 ||| | ||||| ||||| || | || ||| || |||||| ||| ||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 164540 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 164574 ||| | || |||||| | ||||| ||||||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq4 Length=30051516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 164600 TGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGA 164659 |||| || ||| ||||| |||||||| || |||||||| |||||||| ||| | | || Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 164660 TGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGT-- 164717 ||||||||||||| | || || ||| || | |||| || ||| ||| ||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 164718 --ATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCT 164764 |||||||| || || || ||||| ||||| ||||||||| | || || Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 164679 AACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 164738 ||||||||||| || | ||||||| ||| || ||||||||||| ||||| || ||| Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847 Query 164739 AACGCTCACAACTTCCCTCTGGATCT 164764 || ||||||||||||||||| || || Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556874266035960