Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 145 8e-30
seq9 134 2e-26
seq1063 114 1e-20
seq10 109 6e-19
seq4 98.7 1e-15
seq1024 84.2 2e-11
>seq1382
Length=172696
Score = 145 bits (160), Expect = 8e-30
Identities = 240/342 (70%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 164304 CACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTTGGCGGTT 164361
||||||||||| ||||| || || | ||| | || | ||| || ||||| ||||| |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 164362 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCG 164421
| || |||||||| ||||| ||||| |||| || ||| || | | |||||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 164422 AAACTGAGTCC-CAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACA----TACAA 164476
||| || || || | | ||||||| || ||||||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 164477 CA-----TTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTC 164531
| |||| || ||||| ||||| || | || ||||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 164532 AACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTG 164587
|||||||| || ||| | || ||| | || || ||||| ||| |||| |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 164588 GTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAA 164629
| |||| || | ||| || ||| ||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 134 bits (148), Expect = 2e-26
Identities = 177/243 (73%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 164112 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTT 164171
||||| | || ||||| ||||| || | ||| |||||||||||||||||| ||||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 164172 GCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAA 164231
|| || || || || |||||||| || | || || ||| || |||| ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 164232 GGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGT-TGGT 164290
|| |||||||| | ||||| | || || ||| ||| ||||||| ||||| | ||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350
|| | ||||| ||||||||||| ||||| | | || ||| | || || |||| ||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 164351 ATT 164353
|||
Sbjct 1507156 ATT 1507158
>seq1063
Length=431445
Score = 114 bits (126), Expect = 1e-20
Identities = 228/335 (68%), Gaps = 21/335 (6%)
Strand=Plus/Minus
Query 164250 ATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAAC 164309
||||| | || || ||||| || ||| ||| |||| | || || | ||||| ||||||
Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160
Query 164310 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTTGGCGGTTCTCTGT 164367
||||| ||||| | || || ||| | || || ||| || ||||| ||| |
Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT------- 54107
Query 164368 TCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTG 164427
||| | ||||| ||||| |||| |||| | | | |||| ||| |||| |
Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049
Query 164428 AGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACAT-ACAACA-----T 164479
| ||| | | | | || || || ||| |||| ||||| || | |||| | |
Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991
Query 164480 TGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTC 164539
||| || ||||| ||||| || | || ||||||||||||| ||| |||||||||||
Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931
Query 164540 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 164574
||||| || || |||||| | ||||| |||||||
Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 109 bits (120), Expect = 6e-19
Identities = 226/335 (67%), Gaps = 21/335 (6%)
Strand=Plus/Plus
Query 164250 ATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAAC 164309
||||| | || || ||||| || ||||||| |||| | || ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 164310 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTG--CTGGCGTATTTGGCGGTTCTCTGT 164367
||||| ||||| | || || ||| | || || | |||| ||||| ||| |
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT------- 4333013
Query 164368 TCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTG 164427
||| | ||||| ||||| |||| | |||| | | | |||| ||| |||| |
Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 164428 AGTCCCAG--AACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC------ATACAACAT 164479
| ||| | | | | || || || ||| |||| ||||| || ||| | |||
Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129
Query 164480 TGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTC 164539
||| | ||||| ||||| || | || ||| || |||||| ||| |||||||||||
Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189
Query 164540 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 164574
||| | || |||||| | ||||| |||||||
Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq4
Length=30051516
Score = 98.7 bits (108), Expect = 1e-15
Identities = 124/169 (73%), Gaps = 6/169 (4%)
Strand=Plus/Plus
Query 164600 TGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGA 164659
|||| || ||| ||||| |||||||| || |||||||| |||||||| ||| | | ||
Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820
Query 164660 TGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGT-- 164717
||||||||||||| | || || ||| || | |||| || ||| ||| |||
Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878
Query 164718 --ATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCT 164764
|||||||| || || || ||||| ||||| ||||||||| | || ||
Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 164679 AACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 164738
||||||||||| || | ||||||| ||| || ||||||||||| ||||| || |||
Sbjct 156788 AACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGT 156847
Query 164739 AACGCTCACAACTTCCCTCTGGATCT 164764
|| ||||||||||||||||| || ||
Sbjct 156848 AATGCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556874266035960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |