Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq10 140 4e-28
seq1382 136 4e-27
seq9 134 2e-26
seq1063 132 5e-26
seq1042 96.9 4e-15
seq1024 89.7 6e-13
>seq10
Length=33665772
Score = 140 bits (154), Expect = 4e-28
Identities = 231/327 (71%), Gaps = 25/327 (8%)
Strand=Plus/Plus
Query 168950 GATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAG 169009
|||||||||||| ||||||| ||||| || |||||||||||| | |||||||| |||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAG--CAGGTATGTTCGGTGGAT 169067
|||||||| |||||||||| || || ||| ||| |||| | ||| | |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTG 169127
| ||| | | ||||||||||| | || | |||| | | ||||| || | ||||
Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 169128 AGGAAGAATCTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC-CTATAAT- 169183
| | ||||| | | | | || || |||||| |||| ||||| || || |||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 169184 ----ATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAA 169239
||||| | || ||||| || || | |||| | || ||| ||||| ||||||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 169240 CAACTCAAGAAGTCTT--CACTTCTTC 169264
|||||| || |||| || ||||||
Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTC 4333208
>seq1382
Length=172696
Score = 136 bits (150), Expect = 4e-27
Identities = 236/337 (70%), Gaps = 17/337 (5%)
Strand=Plus/Plus
Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCA--GGTATGTTCGGTGGAT 169067
|||||||| ||||||||||| || | ||| ||| |||| ||| | ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTG 169127
| |||||| || ||||||||||| | ||||| ||| | | ||||| || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 169128 AGGAAGAATCT-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAA----CCTATAA 169182
| | |||||| || | | ||||||| |||||||||||||||| || | || ||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 169183 TA-----TTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTC 169237
|| |||| || || ||||| || || | |||| ||| |||| ||||| ||||||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 169238 AACAACTCAAG--AAGTCTTCACTT--CTTCCTAGCAGTGTTCCCAGTTGTATGTGTATG 169293
|||||||| | | |||| || | ||| | |||| | |||||| | || | ||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 169294 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330
| | || || | ||||| | || ||||| ||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832
>seq9
Length=34148863
Score = 134 bits (148), Expect = 2e-26
Identities = 158/211 (75%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910
|| |||||| | |||||||| |||||| |||||||| || || | || || |||
Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009
Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970
|| ||| | | ||||| ||||||| || ||||||||||||||||||| |||||||
Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069
Query 168971 TCTGGAACATTCAACTTCATGT-TCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029
||| | | ||||||||||||| | ||||| | ||||| |||||||| ||||||||||
Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128
Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTC 169060
| || ||| ||| ||| | ||| | |||
Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1063
Length=431445
Score = 132 bits (146), Expect = 5e-26
Identities = 217/307 (71%), Gaps = 23/307 (7%)
Strand=Plus/Minus
Query 168950 GATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAG 169009
|||||||||||| | ||||| ||||| || ||| |||||||| | ||||| | |||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAG--CAGGTATGTTCGGTGGAT 169067
|||||||| |||||||||| || || ||| ||| |||| | ||| | |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTAACA-TCTTCTCTAATCAGAGAGACTACT 169126
| ||| | | ||||||||||| |||| || |||| | | ||||| || | |||
Sbjct 54110 CCCTAGT----ACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056
Query 169127 GAGGAAGAATCTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC------CT 169178
|| | ||||| | | | | || || |||||| |||| ||||| || |
Sbjct 54055 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998
Query 169179 ATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCA 169238
| | |||||| || || ||||| || || | |||| |||||||| ||||| |||||||
Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCA 53938
Query 169239 ACAACTC 169245
|||||||
Sbjct 53937 ACAACTC 53931
>seq1042
Length=564079
Score = 96.9 bits (106), Expect = 4e-15
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 168930 TTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCA 168989
||||||| || | | || ||||||||||||| ||||| ||||| || ||| ||||||
Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803
Query 168990 TGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTT 169032
|| | |||||||| || ||||||||||| |||||||| || ||
Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760
>seq1024
Length=717246
Score = 89.7 bits (98), Expect = 6e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447
|| |||| ||| | | ||| | || |||||||||||||||||||||||||| |||||
Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850
Query 169448 GCTCACAACTTCCCACTAGACTTA 169471
|||||||||||||| |||||| ||
Sbjct 156851 GCTCACAACTTCCCTCTAGACCTA 156874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564390383980320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |