Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq10 140 4e-28 seq1382 136 4e-27 seq9 134 2e-26 seq1063 132 5e-26 seq1042 96.9 4e-15 seq1024 89.7 6e-13 >seq10 Length=33665772 Score = 140 bits (154), Expect = 4e-28 Identities = 231/327 (71%), Gaps = 25/327 (8%) Strand=Plus/Plus Query 168950 GATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAG 169009 |||||||||||| ||||||| ||||| || |||||||||||| | |||||||| ||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAG--CAGGTATGTTCGGTGGAT 169067 |||||||| |||||||||| || || ||| ||| |||| | ||| | ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTG 169127 | ||| | | ||||||||||| | || | |||| | | ||||| || | |||| Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 169128 AGGAAGAATCTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC-CTATAAT- 169183 | | ||||| | | | | || || |||||| |||| ||||| || || ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 169184 ----ATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAA 169239 ||||| | || ||||| || || | |||| | || ||| ||||| |||||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 169240 CAACTCAAGAAGTCTT--CACTTCTTC 169264 |||||| || |||| || |||||| Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTC 4333208 >seq1382 Length=172696 Score = 136 bits (150), Expect = 4e-27 Identities = 236/337 (70%), Gaps = 17/337 (5%) Strand=Plus/Plus Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCA--GGTATGTTCGGTGGAT 169067 |||||||| ||||||||||| || | ||| ||| |||| ||| | ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTG 169127 | |||||| || ||||||||||| | ||||| ||| | | ||||| || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 169128 AGGAAGAATCT-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAA----CCTATAA 169182 | | |||||| || | | ||||||| |||||||||||||||| || | || || Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 169183 TA-----TTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTC 169237 || |||| || || ||||| || || | |||| ||| |||| ||||| |||||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 169238 AACAACTCAAG--AAGTCTTCACTT--CTTCCTAGCAGTGTTCCCAGTTGTATGTGTATG 169293 |||||||| | | |||| || | ||| | |||| | |||||| | || | || Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 169294 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | || || | ||||| | || ||||| |||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAAC 123832 >seq9 Length=34148863 Score = 134 bits (148), Expect = 2e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 1506950 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1507009 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | ||||| ||||||| || ||||||||||||||||||| ||||||| Sbjct 1507010 GTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATA 1507069 Query 168971 TCTGGAACATTCAACTTCATGT-TCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||| | | ||||||||||||| | ||||| | ||||| |||||||| |||||||||| Sbjct 1507070 TCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCT 1507128 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTC 169060 | || ||| ||| ||| | ||| | ||| Sbjct 1507129 GGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1063 Length=431445 Score = 132 bits (146), Expect = 5e-26 Identities = 217/307 (71%), Gaps = 23/307 (7%) Strand=Plus/Minus Query 168950 GATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAG 169009 |||||||||||| | ||||| ||||| || ||| |||||||| | ||||| | ||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 169010 CACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAG--CAGGTATGTTCGGTGGAT 169067 |||||||| |||||||||| || || ||| ||| |||| | ||| | ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 169068 CTCTATTCTCCGCAATGCATGGTTCACTTGTAACA-TCTTCTCTAATCAGAGAGACTACT 169126 | ||| | | ||||||||||| |||| || |||| | | ||||| || | ||| Sbjct 54110 CCCTAGT----ACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056 Query 169127 GAGGAAGAATCTCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAAAC------CT 169178 || | ||||| | | | | || || |||||| |||| ||||| || | Sbjct 54055 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998 Query 169179 ATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCA 169238 | | |||||| || || ||||| || || | |||| |||||||| ||||| ||||||| Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCA 53938 Query 169239 ACAACTC 169245 ||||||| Sbjct 53937 ACAACTC 53931 >seq1042 Length=564079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 168930 TTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCA 168989 ||||||| || | | || ||||||||||||| ||||| ||||| || ||| |||||| Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803 Query 168990 TGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTT 169032 || | |||||||| || ||||||||||| |||||||| || || Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760 >seq1024 Length=717246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 169388 ACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAAC 169447 || |||| ||| | | ||| | || |||||||||||||||||||||||||| ||||| Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850 Query 169448 GCTCACAACTTCCCACTAGACTTA 169471 |||||||||||||| |||||| || Sbjct 156851 GCTCACAACTTCCCTCTAGACCTA 156874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564390383980320