Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq9 98.7 1e-15
seq1382 96.9 4e-15
seq10 89.7 6e-13
seq1 87.8 2e-12
>seq9
Length=34148863
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTG 172242
|||||| | || ||||| ||| ||||||||||| ||||| |||| || ||||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 172243 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 172302
||| | | || || | ||||| || ||||||||||||||||| |||| || ||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 172303 GGTACGTTCAACTTTATGT-TCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 172361
| | |||||||| |||| | || || | ||||| || ||||| || ||||||| |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 172362 CCACATGGCAGGAGTA 172377
|||||| ||| |||
Sbjct 1507132 TCACATGTTAGGTGTA 1507147
>seq1382
Length=172696
Score = 96.9 bits (106), Expect = 4e-15
Identities = 230/342 (67%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 172339 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCA--GGAATGTTTGGAGGAT 172396
|| ||||| || |||||||| || ||||| ||| |||| || | || || || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 172397 CTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTG 172456
| ||||| || ||||| ||||| || || || ||| | | ||||| || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 172457 AAGCAGAATCA-CAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACA----TACAA 172511
|| ||||| || | | || |||| ||||| |||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 172512 CATAGTA-----GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 172566
| |||| || || || ||||| || | || | ||| |||| |||||| ||||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 172567 AACAACTCAAG--AAGTCTTCACTT--CTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 172622
|||||||| | | |||| || | ||| | |||| || || ||| | || | ||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 172623 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 172664
| | || || | ||||| | || ||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq10
Length=33665772
Score = 89.7 bits (98), Expect = 6e-13
Identities = 219/327 (67%), Gaps = 25/327 (8%)
Strand=Plus/Plus
Query 172279 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAG 172338
||||||||||| |||| || || ||||| |||||||| ||| | || ||||| |||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 172339 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAG--CAGGAATGTTTGGAGGAT 172396
|| ||||| || ||||||| || |||||| ||| |||| | || | || ||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 172397 CTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTG 172456
| || | | ||||| ||||| || || | |||| | | ||||| || | ||||
Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 172457 AAGCAGAATCACAG--AACTACGGATACAAGTTCGGACAAGAAGAAGAAAC------ATA 172508
|| ||||| | | | | | || ||||| |||| ||||| || |||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 172509 CAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAA 172568
| ||| |||| || || ||||| || | || | | || ||| |||||| ||||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 172569 CAACTCAAGAAGTCTT--CACTTCTTC 172593
|||||| || |||| || ||||||
Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTC 4333208
>seq1
Length=27573629
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 159694 GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGA 159753
|| |||||||| |||||||| ||| | || ||||||||||| || |||||||| || ||
Sbjct 10971476 GGAGCAGATGTCTGTCATCTTAACCTCCACAAGACATTCTGCATCCCACATGGTGGAGGT 10971535
Query 159754 GGTCCTGGCGTAGGTCCTATTGGTGT 159779
|||||||| | ||||| ||||||||
Sbjct 10971536 GGTCCTGGAATGGGTCCCATTGGTGT 10971561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587997841704240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |