Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq9 98.7 1e-15 seq1382 96.9 4e-15 seq10 89.7 6e-13 seq1 87.8 2e-12 >seq9 Length=34148863 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 172183 GGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTG 172242 |||||| | || ||||| ||| ||||||||||| ||||| |||| || |||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 172243 TTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCA 172302 ||| | | || || | ||||| || ||||||||||||||||| |||| || || Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 172303 GGTACGTTCAACTTTATGT-TCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTT 172361 | | |||||||| |||| | || || | ||||| || ||||| || ||||||| | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 172362 CCACATGGCAGGAGTA 172377 |||||| ||| ||| Sbjct 1507132 TCACATGTTAGGTGTA 1507147 >seq1382 Length=172696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 230/342 (67%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 172339 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCA--GGAATGTTTGGAGGAT 172396 || ||||| || |||||||| || ||||| ||| |||| || | || || || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 172397 CTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTG 172456 | ||||| || ||||| ||||| || || || ||| | | ||||| || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 172457 AAGCAGAATCA-CAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACA----TACAA 172511 || ||||| || | | || |||| ||||| |||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 172512 CATAGTA-----GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTC 172566 | |||| || || || ||||| || | || | ||| |||| |||||| |||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 172567 AACAACTCAAG--AAGTCTTCACTT--CTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 172622 |||||||| | | |||| || | ||| | |||| || || ||| | || | || Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 172623 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 172664 | | || || | ||||| | || ||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq10 Length=33665772 Score = 89.7 bits (98), Expect = 6e-13 Identities = 219/327 (67%), Gaps = 25/327 (8%) Strand=Plus/Plus Query 172279 GATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAG 172338 ||||||||||| |||| || || ||||| |||||||| ||| | || ||||| ||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 172339 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAG--CAGGAATGTTTGGAGGAT 172396 || ||||| || ||||||| || |||||| ||| |||| | || | || || Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 172397 CTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTG 172456 | || | | ||||| ||||| || || | |||| | | ||||| || | |||| Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 172457 AAGCAGAATCACAG--AACTACGGATACAAGTTCGGACAAGAAGAAGAAAC------ATA 172508 || ||||| | | | | | || ||||| |||| ||||| || ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 172509 CAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAA 172568 | ||| |||| || || ||||| || | || | | || ||| |||||| |||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 172569 CAACTCAAGAAGTCTT--CACTTCTTC 172593 |||||| || |||| || |||||| Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTC 4333208 >seq1 Length=27573629 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 159694 GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGA 159753 || |||||||| |||||||| ||| | || ||||||||||| || |||||||| || || Sbjct 10971476 GGAGCAGATGTCTGTCATCTTAACCTCCACAAGACATTCTGCATCCCACATGGTGGAGGT 10971535 Query 159754 GGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | ||||| |||||||| Sbjct 10971536 GGTCCTGGAATGGGTCCCATTGGTGT 10971561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587997841704240