Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1382 150 2e-31 seq1063 145 9e-30 seq10 141 1e-28 seq9 127 2e-24 seq1035 120 3e-22 seq4 95.1 1e-14 >seq1382 Length=172696 Score = 150 bits (166), Expect = 2e-31 Identities = 241/342 (70%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 162904 CACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTCTTCGGTGGTT 162961 |||||||| || |||||||| || ||||||| ||| | || ||||| ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 162962 CACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 163021 | || |||||||| ||||| ||||| ||||| || ||| | || | || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 163022 AAACTGAGTCA-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACATACAA 163076 ||| || || || | | ||||||| |||||||||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 163077 CA-----TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163131 | | || || || |||||||| || | || |||||| |||||||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 163132 AACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTG 163187 |||||||| || ||| | || ||| | || || ||||| ||| | || ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 163188 GTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAA 163229 | |||| || | || | |||||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 145 bits (160), Expect = 9e-30 Identities = 236/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Minus Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909 ||||| || || || |||||| ||| ||| |||| |||| || | ||||| |||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTCTTCGGTGGTTCACTGT 162967 || || ||||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 54107 Query 162968 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 163027 ||| | ||||| ||||| ||||| |||| || || | || | ||||||| | Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049 Query 163028 AGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACAT-ACAACA-----T 163079 | || | | | | || || |||||| |||| |||||||| | |||| | | Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991 Query 163080 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 163139 || || || |||||||| || | || ||||||||||||||||| ||||||||||| Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931 Query 163140 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 163174 ||||| || || |||||| | ||||| ||||||| Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 141 bits (156), Expect = 1e-28 Identities = 235/335 (70%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909 ||||| || || || |||||| ||||||| |||| |||| ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTCTTCGGTGGTTCACTGT 162967 || || ||||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 4333013 Query 162968 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 163027 ||| | ||||| ||||| ||||| | |||| || || | || | ||||||| | Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 163028 AGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACAT-ACAA-----CAT 163079 | || | | | | || || |||||| |||| |||||||| | |||| ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 163080 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 163139 || | || |||||||| || | || |||| || ||||||||| ||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 163140 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 163174 ||| | || |||||| | ||||| ||||||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 127 bits (140), Expect = 2e-24 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| ||||||||||| ||||| ||| || ||||| || || ||||||||||| || | | Sbjct 1506949 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1507007 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || |||| ||| | |||||||| ||||||||| | ||||| || || | Sbjct 1507008 CTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 1507067 Query 162863 TCAGTGGTACATTCAACTACATG-CTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921 | | | | ||||||| |||| |||| || | ||||| |||||||| || |||||| Sbjct 1507068 TATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCAT 1507126 Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTC 162954 | | |||||||| ||||| | ||||| ||| Sbjct 1507127 CTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1035 Length=594915 Score = 120 bits (132), Expect = 3e-22 Identities = 212/306 (69%), Gaps = 20/306 (7%) Strand=Plus/Plus Query 164094 TTTTGGAGTGGCAGCAATCTTCAGAT---TCCTCTTATTCCTTCAAGGATTTCATAACTG 164150 |||||| || ||||| || || ||| |||||| ||||| || | | |||| || Sbjct 236995 TTTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTG 237051 Query 164151 GACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATC 164210 ||| |||||||| || |||||||||||||| || || |||||| || |||||| Sbjct 237052 GACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATG 237110 Query 164211 TGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACAC 164270 |||||||| || | || |||| || || | |||||||| | ||||| || Sbjct 237111 CGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATAC 237166 Query 164271 CT----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAA 164326 | || || ||| | | || || | |||||||||||||| ||||||||||| | Sbjct 237167 ATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTA 237226 Query 164327 ACCGCTTCTGGTCGCAGATC-----TTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCA 164381 |||| || ||||| || ||| || || ||||| ||||| || || || |||| | | Sbjct 237227 ACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGCCTTA 237286 Query 164382 TTTTTT 164387 | |||| Sbjct 237287 TGTTTT 237292 >seq4 Length=30051516 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269 |||||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||| Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830 Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGT-TTGG---GTATGGAAGT 163325 ||||| | || || ||| || | | || ||||| | |||| | |||||||| Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888 Query 163326 TATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCT 163364 || || || || |||||||| |||||||| | ||||| Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557533406221800