Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 150 2e-31
seq1063 145 9e-30
seq10 141 1e-28
seq9 127 2e-24
seq1035 120 3e-22
seq4 95.1 1e-14
>seq1382
Length=172696
Score = 150 bits (166), Expect = 2e-31
Identities = 241/342 (70%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 162904 CACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTCTTCGGTGGTT 162961
|||||||| || |||||||| || ||||||| ||| | || ||||| ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 162962 CACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 163021
| || |||||||| ||||| ||||| ||||| || ||| | || | || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 163022 AAACTGAGTCA-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACATACAA 163076
||| || || || | | ||||||| |||||||||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 163077 CA-----TCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163131
| | || || || |||||||| || | || |||||| |||||||||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 163132 AACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTG 163187
|||||||| || ||| | || ||| | || || ||||| ||| | || |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 163188 GTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAA 163229
| |||| || | || | |||||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 145 bits (160), Expect = 9e-30
Identities = 236/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Minus
Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909
||||| || || || |||||| ||| ||| |||| |||| || | ||||| ||||||
Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160
Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTCTTCGGTGGTTCACTGT 162967
|| || ||||||| || |||||||| ||||| || ||||| ||||| | ||
Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 54107
Query 162968 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 163027
||| | ||||| ||||| ||||| |||| || || | || | ||||||| |
Sbjct 54106 --AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACG 54049
Query 163028 AGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACAT-ACAACA-----T 163079
| || | | | | || || |||||| |||| |||||||| | |||| | |
Sbjct 54048 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTAT 53991
Query 163080 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 163139
|| || || |||||||| || | || ||||||||||||||||| |||||||||||
Sbjct 53990 TGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTC 53931
Query 163140 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 163174
||||| || || |||||| | ||||| |||||||
Sbjct 53930 TCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 141 bits (156), Expect = 1e-28
Identities = 235/335 (70%), Gaps = 21/335 (6%)
Strand=Plus/Plus
Query 162850 ATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 162909
||||| || || || |||||| ||||||| |||| |||| ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 162910 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCA--GGTGTCTTCGGTGGTTCACTGT 162967
|| || ||||||| || |||||||| ||||| || ||||| ||||| | ||
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCT-- 4333013
Query 162968 TCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTG 163027
||| | ||||| ||||| ||||| | |||| || || | || | ||||||| |
Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 163028 AGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACAT-ACAA-----CAT 163079
| || | | | | || || |||||| |||| |||||||| | |||| |||
Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129
Query 163080 CGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTC 163139
|| | || |||||||| || | || |||| || ||||||||| |||||||||||
Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189
Query 163140 CCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 163174
||| | || |||||| | ||||| |||||||
Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 127 bits (140), Expect = 2e-24
Identities = 159/213 (75%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802
||| ||||||||||| ||||| ||| || ||||| || || ||||||||||| || | |
Sbjct 1506949 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1507007
Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862
| || ||| || |||| ||| | |||||||| ||||||||| | ||||| || || |
Sbjct 1507008 CTGTTTTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 1507067
Query 162863 TCAGTGGTACATTCAACTACATG-CTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921
| | | | ||||||| |||| |||| || | ||||| |||||||| || ||||||
Sbjct 1507068 TATCTAGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCAT 1507126
Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTC 162954
| | |||||||| ||||| | ||||| |||
Sbjct 1507127 CTGGTTCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1035
Length=594915
Score = 120 bits (132), Expect = 3e-22
Identities = 212/306 (69%), Gaps = 20/306 (7%)
Strand=Plus/Plus
Query 164094 TTTTGGAGTGGCAGCAATCTTCAGAT---TCCTCTTATTCCTTCAAGGATTTCATAACTG 164150
|||||| || ||||| || || ||| |||||| ||||| || | | |||| ||
Sbjct 236995 TTTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTG 237051
Query 164151 GACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATC 164210
||| |||||||| || |||||||||||||| || || |||||| || ||||||
Sbjct 237052 GACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTCTGCTATG 237110
Query 164211 TGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACAC 164270
|||||||| || | || |||| || || | |||||||| | ||||| ||
Sbjct 237111 CGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATAC 237166
Query 164271 CT----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAA 164326
| || || ||| | | || || | |||||||||||||| ||||||||||| |
Sbjct 237167 ATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTA 237226
Query 164327 ACCGCTTCTGGTCGCAGATC-----TTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCA 164381
|||| || ||||| || ||| || || ||||| ||||| || || || |||| | |
Sbjct 237227 ACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGCCTTA 237286
Query 164382 TTTTTT 164387
| ||||
Sbjct 237287 TGTTTT 237292
>seq4
Length=30051516
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/159 (74%), Gaps = 6/159 (4%)
Strand=Plus/Plus
Query 163210 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 163269
|||||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||||
Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGGT 1282830
Query 163270 CGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGT-TTGG---GTATGGAAGT 163325
||||| | || || ||| || | | || ||||| | |||| | ||||||||
Sbjct 1282831 CGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAGT 1282888
Query 163326 TATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCT 163364
|| || || || |||||||| |||||||| | |||||
Sbjct 1282889 AATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 557533406221800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |