Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq1382 149 7e-31 seq1063 138 1e-27 seq9 131 2e-25 seq10 127 2e-24 seq1042 95.1 1e-14 seq1024 91.5 2e-13 seq1035 89.7 6e-13 seq6 87.8 2e-12 >seq1382 Length=172696 Score = 149 bits (164), Expect = 7e-31 Identities = 217/301 (72%), Gaps = 17/301 (6%) Strand=Plus/Plus Query 167607 CACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTCGGCGGTT 167664 ||||||||||| ||||| || || | ||| | || | ||| || ||||||||||| | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 167665 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 167724 | || |||||||| ||||| ||||| |||| |||||| || | | |||||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 167725 AAACTGAGTC-CCAGAACTATGGTTACAAGTTCGGTCAGGAA----GAAGAGACGTATAA 167779 ||| || || || | | ||||||| |||||||| ||| |||||||| || || Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 167780 -----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 167834 || || |||||||||||||| || | || ||||| ||||||| || ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 167835 AACAACTCCCGCT--CGCTGCACTT--CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTG 167890 |||||||| |||| || || | ||||||||||| ||||| ||| |||||||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 167891 G 167891 | Sbjct 123796 G 123796 >seq1063 Length=431445 Score = 138 bits (152), Expect = 1e-27 Identities = 526/814 (65%), Gaps = 94/814 (12%) Strand=Plus/Minus Query 167130 GGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAAC-CATCTGTTTCATC-- 167186 || |||||||| ||| ||||||||||||| || | | ||||| || | ||| || Sbjct 54681 GGGTGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACGCAACCGTTGTATTGA 54622 Query 167187 --ATCGCCTTCGTCGGTGCTC--CTCCTGTGGACATCGAT----GGTATCCGCGAACCAG 167238 || |||||| | | ||||| ||||||| | || ||| ||||| || |||| | Sbjct 54621 AGATAGCCTTCATTGCTGCTCTCCTCCTGTATATATTGATTGATGGTATTCGTTAACCTG 54562 Query 167239 TTGCTGGTTCACT--CATGTATGGTAACAACATCATCTCTGGT--------GCAGTTGTT 167288 || || |||| | | | || | || | | |||||||| || || || Sbjct 54561 TTTCTCGTTCTATACCTTTCATAGAAATATTCTTCTCTCTGGTTAGTTAGTGCTATTATT 54502 Query 167289 CCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA----GCAACCCT 167344 || ||| | ||||| ||| | || | || ||| |||||||| ||| | | Sbjct 54501 CCGACTTTGACAGCTATAGGT--TGACGAC---CCTATCCGGGAAGCAAGCTGCATCTGT 54447 Query 167345 CGACGAGTGGTTGTACAATGGTGGTCCTTTCCAA-CTCGTAGTTTTCCACTTCCTGA-TT 167402 | |||||||| |||||||| ||||| | || || | |||| ||||| ||| || Sbjct 54446 -GTTGAGTGGTTCTACAATGGCGGTCCCGTAGAAGCTAATTGTTTGACACTTA-TGACTT 54389 Query 167403 GGCATCTATGCCTAT---ATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGT 167459 || | || || ||| ||||||| ||||| | | || | | | ||||||||| Sbjct 54388 GG--TGTA-GCTTATTACATGGGTCCTGAGTTG-----CCGTTTCAATATAGGTATGCGT 54337 Query 167460 CCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCA-TCTGCTGTATTCCTCGT 167518 || ||||| ||||||||| ||||| || ||| | ||| | | || || | | Sbjct 54336 CCTTGGATTGCTGTTGCATATGATGCTC--GTTGCTACTGCAGTTTTCTTGATCGACCCT 54279 Query 167519 CT--ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCT---------------- 167560 | || || | ||||||| | ||||||||||| |||||| | Sbjct 54278 ATTGATTCTATTAGTCAAGGATGTTTCTCTGACGATATGCCTTTAGGAATACAGATGGTA 54219 Query 167561 -------TGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACA 167613 ||| || |||||||| ||| ||| |||| |||| || | ||||| ||||||| Sbjct 54218 TGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAACA 54159 Query 167614 TCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTCGGCGGTTCTCTGTT 167671 |||| ||||| | || || ||| | || || ||| || ||||||||| | Sbjct 54158 TCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT-------- 54107 Query 167672 CAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGA 167731 ||| | ||||| ||||| |||| ||||| | | | |||| ||| |||| || Sbjct 54106 -AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACGA 54048 Query 167732 GTCCCAG--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGT------ATAACATC 167783 ||| | | | | || || |||||| | || |||||||| | | | || Sbjct 54047 ATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTATT 53990 Query 167784 GTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCC 167843 || |||||||||||||| || | || ||||||||||||| || ||||||||||| Sbjct 53989 GTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCT 53930 Query 167844 CGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTG 167877 || || | || ||||||||||| || ||||||| Sbjct 53929 CGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq9 Length=34148863 Score = 131 bits (144), Expect = 2e-25 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474 || || | || ||||| ||||| || | ||| ||||||||||| ||||| |||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534 ||||| || ||||| || || || || ||||||| ||| | |||| ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG-CTTGT 167593 || ||||||||| | |||||| | || || ||| | | ||||||| |||| |||| Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 167594 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 167653 || | ||||| ||||||||||| ||||| | | || ||| | || || |||| || Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 167654 ATTC 167657 |||| Sbjct 1507156 ATTC 1507159 >seq10 Length=33665772 Score = 127 bits (140), Expect = 2e-24 Identities = 230/335 (69%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612 |||||| | || || |||||||| ||||||| |||| |||| ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTG--CTGGCGTATTCGGCGGTTCTCTGT 167670 ||||| ||||| | || || ||| | || || | |||| ||||||||| | Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT------- 4333013 Query 167671 TCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTG 167730 ||| | ||||| ||||| |||| | ||||| | | | |||| ||| |||| | Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 167731 AGTCCCAG--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGAC------GTATAACAT 167782 | ||| | | | | || || |||||| | || |||||||| || | ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 167783 CGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTC 167842 || | |||||||||||| || | || ||| || |||||| || ||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 167843 CCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTG 167877 || || ||||||||||| || ||||||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1042 Length=564079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 167529 GGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG 167588 |||||||| | | || || | ||||||| || ||||||||||| ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 167589 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 167648 |||| ||||| || |||||||||||||| |||||||| || | ||| | || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 167649 GG 167650 || Sbjct 550740 GG 550739 >seq1024 Length=717246 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044 |||||||| || | ||||||||||| || ||||||||||| ||||| || |||||| Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850 Query 168045 GCTCACAACTTCCCTCTCGACCT 168067 ||||||||||||||||| ||||| Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873 >seq1035 Length=594915 Score = 89.7 bits (98), Expect = 6e-13 Identities = 231/349 (66%), Gaps = 26/349 (7%) Strand=Plus/Plus Query 169006 ATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCT 169065 |||| ||||| |||| || || |||||||||| || ||| | || || | || Sbjct 237045 ATAATTGGACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTC 237103 Query 169066 TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAG 169125 |||| | || ||||||||| | ||| | || ||| | | |||||||| | | Sbjct 237104 TGCTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTG 237159 Query 169126 CAAATACTTTCAAA----GCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTT 169181 ||||||| | | || ||| || ||||| | || ||||| ||||||||||| Sbjct 237160 CAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 237219 Query 169182 ACTGCAAACCGTTTCTGGTCTCAGATC-----TTTGGTATTGCGTTCAGTAATAAGAGGT 169236 ||||| |||||||| ||||| || ||| || || |||| || ||||| | | Sbjct 237220 ACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTT 237279 Query 169237 GGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCAT--CGG 169294 || | ||||| | ||||| | || | ||| | |||| ||| | || || Sbjct 237280 GG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGG 237331 Query 169295 TATTA--TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCC 169341 || || | ||||| ||||| || || ||||| |||||||| ||||||| Sbjct 237332 TAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC 237380 >seq6 Length=34899179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 168700 ATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAAC 168759 ||||| | |||| || ||||||||||| |||||||| |||| | | |||| ||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATT---TTACTCGGTGCCAAT 26461217 Query 168760 TTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGC 168819 | || || || ||| ||||||| || ||||| || |||||||| ||||| || || ||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158 Query 168820 TTCGTCAGTTTGAACT 168835 | ||||| || |||| Sbjct 26461157 TACGTCAATTCTAACT 26461142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560557131831600