Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015286.1
Length=175230
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 149 7e-31
seq1063 138 1e-27
seq9 131 2e-25
seq10 127 2e-24
seq1042 95.1 1e-14
seq1024 91.5 2e-13
seq1035 89.7 6e-13
seq6 87.8 2e-12
>seq1382
Length=172696
Score = 149 bits (164), Expect = 7e-31
Identities = 217/301 (72%), Gaps = 17/301 (6%)
Strand=Plus/Plus
Query 167607 CACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTCGGCGGTT 167664
||||||||||| ||||| || || | ||| | || | ||| || ||||||||||| |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 167665 CTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 167724
| || |||||||| ||||| ||||| |||| |||||| || | | |||||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 167725 AAACTGAGTC-CCAGAACTATGGTTACAAGTTCGGTCAGGAA----GAAGAGACGTATAA 167779
||| || || || | | ||||||| |||||||| ||| |||||||| || ||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 167780 -----CATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTC 167834
|| || |||||||||||||| || | || ||||| ||||||| || |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 167835 AACAACTCCCGCT--CGCTGCACTT--CTTCTTGGCAGCATGGCCTGTTGTTGGTATCTG 167890
|||||||| |||| || || | ||||||||||| ||||| ||| ||||||||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 167891 G 167891
|
Sbjct 123796 G 123796
>seq1063
Length=431445
Score = 138 bits (152), Expect = 1e-27
Identities = 526/814 (65%), Gaps = 94/814 (12%)
Strand=Plus/Minus
Query 167130 GGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCAAC-CATCTGTTTCATC-- 167186
|| |||||||| ||| ||||||||||||| || | | ||||| || | ||| ||
Sbjct 54681 GGGTGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACGCAACCGTTGTATTGA 54622
Query 167187 --ATCGCCTTCGTCGGTGCTC--CTCCTGTGGACATCGAT----GGTATCCGCGAACCAG 167238
|| |||||| | | ||||| ||||||| | || ||| ||||| || |||| |
Sbjct 54621 AGATAGCCTTCATTGCTGCTCTCCTCCTGTATATATTGATTGATGGTATTCGTTAACCTG 54562
Query 167239 TTGCTGGTTCACT--CATGTATGGTAACAACATCATCTCTGGT--------GCAGTTGTT 167288
|| || |||| | | | || | || | | |||||||| || || ||
Sbjct 54561 TTTCTCGTTCTATACCTTTCATAGAAATATTCTTCTCTCTGGTTAGTTAGTGCTATTATT 54502
Query 167289 CCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA----GCAACCCT 167344
|| ||| | ||||| ||| | || | || ||| |||||||| ||| | |
Sbjct 54501 CCGACTTTGACAGCTATAGGT--TGACGAC---CCTATCCGGGAAGCAAGCTGCATCTGT 54447
Query 167345 CGACGAGTGGTTGTACAATGGTGGTCCTTTCCAA-CTCGTAGTTTTCCACTTCCTGA-TT 167402
| |||||||| |||||||| ||||| | || || | |||| ||||| ||| ||
Sbjct 54446 -GTTGAGTGGTTCTACAATGGCGGTCCCGTAGAAGCTAATTGTTTGACACTTA-TGACTT 54389
Query 167403 GGCATCTATGCCTAT---ATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGT 167459
|| | || || ||| ||||||| ||||| | | || | | | |||||||||
Sbjct 54388 GG--TGTA-GCTTATTACATGGGTCCTGAGTTG-----CCGTTTCAATATAGGTATGCGT 54337
Query 167460 CCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCA-TCTGCTGTATTCCTCGT 167518
|| ||||| ||||||||| ||||| || ||| | ||| | | || || | |
Sbjct 54336 CCTTGGATTGCTGTTGCATATGATGCTC--GTTGCTACTGCAGTTTTCTTGATCGACCCT 54279
Query 167519 CT--ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCT---------------- 167560
| || || | ||||||| | ||||||||||| |||||| |
Sbjct 54278 ATTGATTCTATTAGTCAAGGATGTTTCTCTGACGATATGCCTTTAGGAATACAGATGGTA 54219
Query 167561 -------TGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACA 167613
||| || |||||||| ||| ||| |||| |||| || | ||||| |||||||
Sbjct 54218 TGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAACA 54159
Query 167614 TCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT--GGCGTATTCGGCGGTTCTCTGTT 167671
|||| ||||| | || || ||| | || || ||| || ||||||||| |
Sbjct 54158 TCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT-------- 54107
Query 167672 CAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGA 167731
||| | ||||| ||||| |||| ||||| | | | |||| ||| |||| ||
Sbjct 54106 -AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAACGA 54048
Query 167732 GTCCCAG--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACGT------ATAACATC 167783
||| | | | | || || |||||| | || |||||||| | | | ||
Sbjct 54047 ATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTATT 53990
Query 167784 GTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCC 167843
|| |||||||||||||| || | || ||||||||||||| || |||||||||||
Sbjct 53989 GTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCT 53930
Query 167844 CGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTG 167877
|| || | || ||||||||||| || |||||||
Sbjct 53929 CGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq9
Length=34148863
Score = 131 bits (144), Expect = 2e-25
Identities = 177/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 167415 TATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTT 167474
|| || | || ||||| ||||| || | ||| ||||||||||| ||||| ||||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 167475 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 167534
||||| || ||||| || || || || ||||||| ||| | |||| ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 167535 GGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG-CTTGT 167593
|| ||||||||| | |||||| | || || ||| | | ||||||| |||| ||||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 167594 CTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 167653
|| | ||||| ||||||||||| ||||| | | || ||| | || || |||| ||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 167654 ATTC 167657
||||
Sbjct 1507156 ATTC 1507159
>seq10
Length=33665772
Score = 127 bits (140), Expect = 2e-24
Identities = 230/335 (69%), Gaps = 21/335 (6%)
Strand=Plus/Plus
Query 167553 ATGCCTCTTGGTATCTCTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 167612
|||||| | || || |||||||| ||||||| |||| |||| ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 167613 ATCCTGATGCACCCCTTCCATATGCTCGGCGTTG--CTGGCGTATTCGGCGGTTCTCTGT 167670
||||| ||||| | || || ||| | || || | |||| ||||||||| |
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT------- 4333013
Query 167671 TCAGTGCAATGCACGGTTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTG 167730
||| | ||||| ||||| |||| | ||||| | | | |||| ||| |||| |
Sbjct 4333014 --AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 167731 AGTCCCAG--AACTATGGTTACAAGTTCGGTCAGGAAGAAGAGAC------GTATAACAT 167782
| ||| | | | | || || |||||| | || |||||||| || | |||
Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129
Query 167783 CGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTC 167842
|| | |||||||||||| || | || ||| || |||||| || |||||||||||
Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189
Query 167843 CCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTG 167877
|| || ||||||||||| || |||||||
Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1042
Length=564079
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 167529 GGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCAACTACATG 167588
|||||||| | | || || | ||||||| || ||||||||||| ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 167589 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCT 167648
|||| ||||| || |||||||||||||| |||||||| || | ||| | || |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 167649 GG 167650
||
Sbjct 550740 GG 550739
>seq1024
Length=717246
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 167985 ACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 168044
|||||||| || | ||||||||||| || ||||||||||| ||||| || ||||||
Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850
Query 168045 GCTCACAACTTCCCTCTCGACCT 168067
||||||||||||||||| |||||
Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873
>seq1035
Length=594915
Score = 89.7 bits (98), Expect = 6e-13
Identities = 231/349 (66%), Gaps = 26/349 (7%)
Strand=Plus/Plus
Query 169006 ATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCT 169065
|||| ||||| |||| || || |||||||||| || ||| | || || | ||
Sbjct 237045 ATAATTGGACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTC 237103
Query 169066 TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAG 169125
|||| | || ||||||||| | ||| | || ||| | | |||||||| | |
Sbjct 237104 TGCTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTG 237159
Query 169126 CAAATACTTTCAAA----GCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTT 169181
||||||| | | || ||| || ||||| | || ||||| |||||||||||
Sbjct 237160 CAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTC 237219
Query 169182 ACTGCAAACCGTTTCTGGTCTCAGATC-----TTTGGTATTGCGTTCAGTAATAAGAGGT 169236
||||| |||||||| ||||| || ||| || || |||| || ||||| | |
Sbjct 237220 ACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTT 237279
Query 169237 GGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCAT--CGG 169294
|| | ||||| | ||||| | || | ||| | |||| ||| | || ||
Sbjct 237280 GG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGG 237331
Query 169295 TATTA--TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCC 169341
|| || | ||||| ||||| || || ||||| |||||||| |||||||
Sbjct 237332 TAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC 237380
>seq6
Length=34899179
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/136 (75%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 168700 ATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAAC 168759
||||| | |||| || ||||||||||| |||||||| |||| | | |||| |||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATT---TTACTCGGTGCCAAT 26461217
Query 168760 TTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGC 168819
| || || || ||| ||||||| || ||||| || |||||||| ||||| || || |||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158
Query 168820 TTCGTCAGTTTGAACT 168835
| ||||| || ||||
Sbjct 26461157 TACGTCAATTCTAACT 26461142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560557131831600
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