Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 136 6e-27
seq1063 129 9e-25
seq10 127 3e-24
seq9 120 5e-22
seq1042 116 6e-21
>seq1382
Length=172696
Score = 136 bits (150), Expect = 6e-27
Identities = 239/342 (70%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG--CTGGTGTCTTCGGTGGTT 215870
|||||||| || ||||| ||||| ||||||||||| | | ||||||| ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTG 215930
| | ||| ||| ||||| ||||| | || || ||| | | ||||| || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 215931 AGCAAGAATCT-CAGAACTACGGTTACAAGTTCGGACAAG----AGGAGGAAACATACAA 215985
| | |||||| || | | ||||||| ||||| |||| |||| || || |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 215986 -----CATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTC 216040
|| |||||||| || ||||| || | || | ||| ||||||| || ||||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 216041 AACAACTCAAG--AAGTCTTCACTT--CTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096
|||||||| | | |||| || | ||| | ||||| | || |||||| |||||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAA 216138
|| || || | ||| | || ||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 129 bits (142), Expect = 9e-25
Identities = 216/307 (70%), Gaps = 23/307 (7%)
Strand=Plus/Minus
Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812
|||| |||||| ||||||| ||||| || ||| ||| |||| |||| || | ||| ||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG--CTGGTGTCTTCGGTGGTT 215870
|||||||| || ||||| | ||| |||||||||||||| | ||||||| |||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 54110
Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACA-TCTTCTCTAATCAGAGAGACAACT 215929
| | || || ||||| ||||| |||| | || |||| | | ||||| || | |||
Sbjct 54109 CCTAGTACT-----ATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056
Query 215930 GAGCAAGAATCTCAG--AACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC------AT 215981
|| | ||||| | | | | || || ||||| ||||||| || || ||
Sbjct 54055 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998
Query 215982 ACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCA 216041
| | || |||||||| || ||||| || | || | ||||||||||| || |||||
Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCA 53938
Query 216042 ACAACTC 216048
|||||||
Sbjct 53937 ACAACTC 53931
>seq10
Length=33665772
Score = 127 bits (140), Expect = 3e-24
Identities = 237/343 (69%), Gaps = 25/343 (7%)
Strand=Plus/Plus
Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812
|||| |||||| | ||||| ||||| || ||||||| |||| |||| |||||||| ||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG--CTGGTGTCTTCGGTGGTT 215870
|||||||| || ||||| | ||| |||||||||||||| | ||||||| |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 4333010
Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTG 215930
| | || || ||||| ||||| | || | |||| | | ||||| || | ||||
Sbjct 4333011 CCTAGTACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 215931 AGCAAGAATCTCAG--AACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC------ATA 215982
| | ||||| | | | | || || ||||| ||||||| || || |||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 215983 CAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAA 216042
| ||| |||| ||| || ||||| || | || | | || |||||| || ||||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 216043 CAACTCAAGAAGTCTT--CACTTCTTCCTTGCAGCATTCCCTG 216083
|||||| || |||| || |||||| | || || | ||||
Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 120 bits (132), Expect = 5e-22
Identities = 153/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 215657 GGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTA 215716
|||||| | |||||||| |||||| || || || ||||| | ||||| ||| ||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776
||| | | || || | ||||| || ||||||||||| |||||| | ||||| |||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 215777 GGAACATTCAACTACATGT-TTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATT 215835
| | ||||||| ||||| |||| || | ||| || |||||||| || ||||| | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 215836 CCACATGTTAGGTGTGGCTGGTGTCTTC 215863
|||||||||||||| ||||||| |||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1042
Length=564079
Score = 116 bits (128), Expect = 6e-21
Identities = 90/107 (84%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 215750 TCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCT 215809
|| |||| |||||| | ||||||||||| || ||| ||| |||| |||| |||||||||
Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786
Query 215810 GAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGG 215856
||||||||||| || ||||||||||| ||||||||||| | |||||
Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 745013993158320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |