Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1382 136 6e-27 seq1063 129 9e-25 seq10 127 3e-24 seq9 120 5e-22 seq1042 116 6e-21 >seq1382 Length=172696 Score = 136 bits (150), Expect = 6e-27 Identities = 239/342 (70%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG--CTGGTGTCTTCGGTGGTT 215870 |||||||| || ||||| ||||| ||||||||||| | | ||||||| ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTG 215930 | | ||| ||| ||||| ||||| | || || ||| | | ||||| || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 215931 AGCAAGAATCT-CAGAACTACGGTTACAAGTTCGGACAAG----AGGAGGAAACATACAA 215985 | | |||||| || | | ||||||| ||||| |||| |||| || || ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 215986 -----CATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTC 216040 || |||||||| || ||||| || | || | ||| ||||||| || |||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 216041 AACAACTCAAG--AAGTCTTCACTT--CTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 |||||||| | | |||| || | ||| | ||||| | || |||||| ||||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAA 216138 || || || | ||| | || ||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 129 bits (142), Expect = 9e-25 Identities = 216/307 (70%), Gaps = 23/307 (7%) Strand=Plus/Minus Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812 |||| |||||| ||||||| ||||| || ||| ||| |||| |||| || | ||| || Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG--CTGGTGTCTTCGGTGGTT 215870 |||||||| || ||||| | ||| |||||||||||||| | ||||||| ||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 54110 Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACA-TCTTCTCTAATCAGAGAGACAACT 215929 | | || || ||||| ||||| |||| | || |||| | | ||||| || | ||| Sbjct 54109 CCTAGTACT-----ATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACT 54056 Query 215930 GAGCAAGAATCTCAG--AACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC------AT 215981 || | ||||| | | | | || || ||||| ||||||| || || || Sbjct 54055 GAAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAAT 53998 Query 215982 ACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCA 216041 | | || |||||||| || ||||| || | || | ||||||||||| || ||||| Sbjct 53997 AGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCA 53938 Query 216042 ACAACTC 216048 ||||||| Sbjct 53937 ACAACTC 53931 >seq10 Length=33665772 Score = 127 bits (140), Expect = 3e-24 Identities = 237/343 (69%), Gaps = 25/343 (7%) Strand=Plus/Plus Query 215753 GATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAG 215812 |||| |||||| | ||||| ||||| || ||||||| |||| |||| |||||||| || Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 215813 CACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG--CTGGTGTCTTCGGTGGTT 215870 |||||||| || ||||| | ||| |||||||||||||| | ||||||| ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----C 4333010 Query 215871 CATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTG 215930 | | || || ||||| ||||| | || | |||| | | ||||| || | |||| Sbjct 4333011 CCTAGTACT-----ATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 215931 AGCAAGAATCTCAG--AACTACGGTTACAAGTTCGGACAAGAGGAGGAAAC------ATA 215982 | | ||||| | | | | || || ||||| ||||||| || || ||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 215983 CAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAA 216042 | ||| |||| ||| || ||||| || | || | | || |||||| || |||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 216043 CAACTCAAGAAGTCTT--CACTTCTTCCTTGCAGCATTCCCTG 216083 |||||| || |||| || |||||| | || || | |||| Sbjct 4333184 CAACTC--GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 120 bits (132), Expect = 5e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 215657 GGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTA 215716 |||||| | |||||||| |||||| || || || ||||| | ||||| ||| || Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 215717 TTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCT 215776 ||| | | || || | ||||| || ||||||||||| |||||| | ||||| ||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 215777 GGAACATTCAACTACATGT-TTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATT 215835 | | ||||||| ||||| |||| || | ||| || |||||||| || ||||| | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 215836 CCACATGTTAGGTGTGGCTGGTGTCTTC 215863 |||||||||||||| ||||||| ||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1042 Length=564079 Score = 116 bits (128), Expect = 6e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 215750 TCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCT 215809 || |||| |||||| | ||||||||||| || ||| ||| |||| |||| ||||||||| Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786 Query 215810 GAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGG 215856 ||||||||||| || ||||||||||| ||||||||||| | ||||| Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745013993158320