Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015288.1
Length=191195
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 154 2e-32
seq9 131 2e-25
seq1063 129 7e-25
seq10 125 9e-24
seq1035 123 3e-23
seq4 118 1e-21
seq1024 96.9 4e-15
seq1042 86.0 8e-12
seq2913 84.2 3e-11
>seq1382
Length=172696
Score = 154 bits (170), Expect = 2e-32
Identities = 242/342 (71%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA--GGTGTATTCGGTGGTT 182370
|||||||| ||||||||||| || ||||||| ||| |||| ||||||||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430
| || || ||||| ||||| ||||| ||||| || ||| | || | || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 182431 AGCAAGAGTC-ACAGAACTATGGTTACAAGTTCGGTCAAGAA----GAAGAGACCTATAA 182485
| | || || || | | ||||||| |||||||||||| |||||||| || ||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 182486 -----CATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTC 182540
|| || || || ||||| || || | || |||||| ||||||| || |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 182541 AACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596
|||||||| || ||| | || ||| | || || ||||| ||| |||| |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAA 182638
| |||| || | ||| | ||| ||||| |||||||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 131 bits (144), Expect = 2e-25
Identities = 177/244 (73%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 182121 TACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTA 182180
||||| | | ||||| |||||| || | | ||||||||||| ||||| |||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 182181 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAA 182240
||||| || ||||| || || || || ||||||| ||||| |||| ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 182241 GGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGT-TGGT 182299
|| ||||| |||| ||||| | ||||| || | | ||||||| |||| | ||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 182300 TTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGT 182359
|| | || || |||||||| |||||||||| | |||||||| |||||| | |||||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 182360 ATTC 182363
||||
Sbjct 1507156 ATTC 1507159
>seq1063
Length=431445
Score = 129 bits (142), Expect = 7e-25
Identities = 235/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 182253 GATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAG 182312
|||| ||||| | ||||| || || || ||| ||| ||| | || || | || ||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA--GGTGTATTCGGTGGTT 182370
|||||||| |||||||||| || |||||||| |||||||| |||||||||||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111
Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430
| || ||| | ||||| ||||| ||||| |||| || || | || | ||||
Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 182431 AGCAAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT------A 182482
| | || || | | | | || || |||||| |||| |||||||| | |
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 182483 TAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAA 182542
| || || || || ||||| || || | || |||||||||||||| || |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 182543 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 182583
|||||| ||||| || || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 125 bits (138), Expect = 9e-24
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 182253 GATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAG 182312
|||| ||||| | ||||| || || || ||||||| ||| | || ||||| || ||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA--GGTGTATTCGGTGGTT 182370
|||||||| |||||||||| || |||||||| |||||||| |||||||||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430
| || ||| | ||||| ||||| ||||| | |||| || || | || | ||||
Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 182431 AGCAAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT------A 182482
| | || || | | | | || || |||||| |||| |||||||| | |
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 182483 TAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAA 182542
| ||| || | || ||||| || || | || |||| || |||||| || |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 182543 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 182583
|||||| ||| | || |||||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1035
Length=594915
Score = 123 bits (136), Expect = 3e-23
Identities = 299/448 (67%), Gaps = 41/448 (9%)
Strand=Plus/Plus
Query 183604 GTATTCCT-TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGT 183662
||||| || | | |||| || |||||| ||| |||| ||| |||||| || ||
Sbjct 236952 GTATTTCTCTCTTTATCTACAGGGTCAATCT----GGTTT----CACATAGTTTTGGTGT 237003
Query 183663 AGCAGCAATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAA 183719
|||||| || ||| ||| |||| | |||| | | | | || |||||||| ||
Sbjct 237004 AGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGGACGTTGAA 237060
Query 183720 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCA 183779
||| || |||||||||||||| || || |||| | || || || | ||||| ||
Sbjct 237061 CCCTTTGAATATGATGGGAGTT-TAGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCA 237119
Query 183780 TGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT----TCA 183835
|||| | ||| | || || || | |||||||| | ||||| |||| |
Sbjct 237120 TGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATACTGTTC 237175
Query 183836 AGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCT 183895
|| ||| | | ||||||| |||||||| ||||| ||||| || || || ||||| |
Sbjct 237176 GTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGTTTTT 237235
Query 183896 GGTCACAAATC-----TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTAT 183950
|||| |||||| || |||||||| ||| |||||| |||||| | ||||
Sbjct 237236 GGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------CCTTAT 237287
Query 183951 GTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCAT----CATTGGGCTTG 184006
||| ||||| | || | ||| | ||| | | ||||||| | | || || |
Sbjct 237288 GTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGGTCTGG 237347
Query 184007 CTCTTAATCTTCGTGCTTATGATTTTGT 184034
|||| ||||| ||||| ||||| || ||
Sbjct 237348 CTCTGAATCTACGTGCCTATGACTTCGT 237375
>seq4
Length=30051516
Score = 118 bits (130), Expect = 1e-21
Identities = 123/160 (77%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 182618 CACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 182677
||| ||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||
Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829
Query 182678 TCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGT----ATGGAAG 182733
||||||| |||| || ||| ||| | | || |||||| ||||||| |||||||
Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887
Query 182734 TTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCT 182773
| || ||||| ||||| || || |||||||| |||| ||
Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 96.9 bits (106), Expect = 4e-15
Identities = 74/88 (84%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 182686 TTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGC 182745
||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||| |
Sbjct 156786 TTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAAC 156845
Query 182746 GTAACGCACACAACTTCCCACTAGATCT 182773
|||| || ||||||||||| ||||| ||
Sbjct 156846 GTAATGCTCACAACTTCCCTCTAGACCT 156873
>seq1042
Length=564079
Score = 86.0 bits (94), Expect = 8e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 182250 TCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCT 182309
|| |||| ||||| | ||||||||| || || ||| ||| ||| | || ||||| |||
Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786
Query 182310 GAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356
||||||||||| |||||||| || || ||||||| ||| | || ||
Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739
>seq2913
Length=44711
Score = 84.2 bits (92), Expect = 3e-11
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 183586 ATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 183645
|||||||||||||| |||||| | || |||||||||||||| ||| |||||||||
Sbjct 3928 ATTGCTGTTTTTGTTTCAGTATTCTTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTT 3869
Query 183646 GCACCTAGTTTCGGGGTAGCA 183666
||||||||||| || ||| ||
Sbjct 3868 GCACCTAGTTTTGGCGTACCA 3848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611640496234200
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