Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq1382 154 2e-32 seq9 131 2e-25 seq1063 129 7e-25 seq10 125 9e-24 seq1035 123 3e-23 seq4 118 1e-21 seq1024 96.9 4e-15 seq1042 86.0 8e-12 seq2913 84.2 3e-11 >seq1382 Length=172696 Score = 154 bits (170), Expect = 2e-32 Identities = 242/342 (71%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA--GGTGTATTCGGTGGTT 182370 |||||||| ||||||||||| || ||||||| ||| |||| ||||||||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430 | || || ||||| ||||| ||||| ||||| || ||| | || | || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 182431 AGCAAGAGTC-ACAGAACTATGGTTACAAGTTCGGTCAAGAA----GAAGAGACCTATAA 182485 | | || || || | | ||||||| |||||||||||| |||||||| || || Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 182486 -----CATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTC 182540 || || || || ||||| || || | || |||||| ||||||| || ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 182541 AACAACTCCCG----TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 |||||||| || ||| | || ||| | || || ||||| ||| |||| ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAA 182638 | |||| || | ||| | ||| ||||| ||||||||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 131 bits (144), Expect = 2e-25 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 182121 TACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTA 182180 ||||| | | ||||| |||||| || | | ||||||||||| ||||| ||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 182181 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAA 182240 ||||| || ||||| || || || || ||||||| ||||| |||| ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 182241 GGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGT-TGGT 182299 || ||||| |||| ||||| | ||||| || | | ||||||| |||| | || Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 182300 TTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGT 182359 || | || || |||||||| |||||||||| | |||||||| |||||| | ||||| Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 182360 ATTC 182363 |||| Sbjct 1507156 ATTC 1507159 >seq1063 Length=431445 Score = 129 bits (142), Expect = 7e-25 Identities = 235/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 182253 GATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAG 182312 |||| ||||| | ||||| || || || ||| ||| ||| | || || | || || Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA--GGTGTATTCGGTGGTT 182370 |||||||| |||||||||| || |||||||| |||||||| ||||||||||| Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 54111 Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430 | || ||| | ||||| ||||| ||||| |||| || || | || | |||| Sbjct 54110 CCCT----AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 182431 AGCAAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT------A 182482 | | || || | | | | || || |||||| |||| |||||||| | | Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 182483 TAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAA 182542 | || || || || ||||| || || | || |||||||||||||| || ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 182543 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 182583 |||||| ||||| || || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 125 bits (138), Expect = 9e-24 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 182253 GATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAG 182312 |||| ||||| | ||||| || || || ||||||| ||| | || ||||| || || Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 182313 CACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCA--GGTGTATTCGGTGGTT 182370 |||||||| |||||||||| || |||||||| |||||||| ||||||||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 182371 CACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430 | || ||| | ||||| ||||| ||||| | |||| || || | || | |||| Sbjct 4333010 CCCT----AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 182431 AGCAAGAGTCACAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT------A 182482 | | || || | | | | || || |||||| |||| |||||||| | | Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 182483 TAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAA 182542 | ||| || | || ||||| || || | || |||| || |||||| || ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 182543 CAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 182583 |||||| ||| | || |||||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1035 Length=594915 Score = 123 bits (136), Expect = 3e-23 Identities = 299/448 (67%), Gaps = 41/448 (9%) Strand=Plus/Plus Query 183604 GTATTCCT-TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGT 183662 ||||| || | | |||| || |||||| ||| |||| ||| |||||| || || Sbjct 236952 GTATTTCTCTCTTTATCTACAGGGTCAATCT----GGTTT----CACATAGTTTTGGTGT 237003 Query 183663 AGCAGCAATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAA 183719 |||||| || ||| ||| |||| | |||| | | | | || |||||||| || Sbjct 237004 AGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGA---ATAATTGGACGTTGAA 237060 Query 183720 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCA 183779 ||| || |||||||||||||| || || |||| | || || || | ||||| || Sbjct 237061 CCCTTTGAATATGATGGGAGTT-TAGGAGTATTAGGCGCTGCTCTGCTATGCGCTATTCA 237119 Query 183780 TGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACAT----TCA 183835 |||| | ||| | || || || | |||||||| | ||||| |||| | Sbjct 237120 TGGT----CTGTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACATACTGTTC 237175 Query 183836 AGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCT 183895 || ||| | | ||||||| |||||||| ||||| ||||| || || || ||||| | Sbjct 237176 GTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGTTTTT 237235 Query 183896 GGTCACAAATC-----TTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTAT 183950 |||| |||||| || |||||||| ||| |||||| |||||| | |||| Sbjct 237236 GGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG--------CCTTAT 237287 Query 183951 GTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCAT----CATTGGGCTTG 184006 ||| ||||| | || | ||| | ||| | | ||||||| | | || || | Sbjct 237288 GTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTCGGTCTGG 237347 Query 184007 CTCTTAATCTTCGTGCTTATGATTTTGT 184034 |||| ||||| ||||| ||||| || || Sbjct 237348 CTCTGAATCTACGTGCCTATGACTTCGT 237375 >seq4 Length=30051516 Score = 118 bits (130), Expect = 1e-21 Identities = 123/160 (77%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 182618 CACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 182677 ||| ||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||| Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829 Query 182678 TCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGT----ATGGAAG 182733 ||||||| |||| || ||| ||| | | || |||||| ||||||| ||||||| Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887 Query 182734 TTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCT 182773 | || ||||| ||||| || || |||||||| |||| || Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 182686 TTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGC 182745 ||||||||||||| ||| | | ||||||||| |||||||||||||| |||||||| | Sbjct 156786 TTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAAC 156845 Query 182746 GTAACGCACACAACTTCCCACTAGATCT 182773 |||| || ||||||||||| ||||| || Sbjct 156846 GTAATGCTCACAACTTCCCTCTAGACCT 156873 >seq1042 Length=564079 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 182250 TCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCT 182309 || |||| ||||| | ||||||||| || || ||| ||| ||| | || ||||| ||| Sbjct 550845 TCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATGATTGTATTCCAGGCT 550786 Query 182310 GAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 ||||||||||| |||||||| || || ||||||| ||| | || || Sbjct 550785 GAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCTGG 550739 >seq2913 Length=44711 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 183586 ATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTT 183645 |||||||||||||| |||||| | || |||||||||||||| ||| ||||||||| Sbjct 3928 ATTGCTGTTTTTGTTTCAGTATTCTTGATTTATCCACTGGGTCAATCTGGTTGGTTCTTT 3869 Query 183646 GCACCTAGTTTCGGGGTAGCA 183666 ||||||||||| || ||| || Sbjct 3868 GCACCTAGTTTTGGCGTACCA 3848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611640496234200