Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq9 181 1e-40 seq1063 109 6e-19 seq10 104 3e-17 seq4 104 3e-17 seq1042 100 3e-16 seq1035 96.9 4e-15 seq1024 87.8 2e-12 >seq9 Length=34148863 Score = 181 bits (200), Expect = 1e-40 Identities = 194/254 (76%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 165081 TGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTG 165140 ||||||||| ||||| | || ||||| ||||| || | || |||||||||||||| Sbjct 1506907 TGTAGCTTGTTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTG 1506966 Query 165141 GATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCC 165200 |||| || |||||| || ||||| || |||||| | || |||||| || |||| || Sbjct 1506967 GATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCC 1507026 Query 165201 TTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTA 165260 | | |||||||| ||||||||||||||||||||| | || || ||| | | ||| |||| Sbjct 1507027 TATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTT 1507085 Query 165261 TATGT-TCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCG 165319 |||| | || || | |||||||| ||||| |||||||||| | | |||||| | || | Sbjct 1507086 CATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTG 1507145 Query 165320 TTGCTGGGGTATTC 165333 | |||| |||||| Sbjct 1507146 TAACTGGTGTATTC 1507159 >seq1063 Length=431445 Score = 109 bits (120), Expect = 6e-19 Identities = 392/609 (64%), Gaps = 83/609 (14%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTC----GGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGC 164843 ||||||||||| | || |||||||||||| | |||||||| || ||| ||| Sbjct 54700 AACCGTCTTTACATTCATTGGGTGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGC 54641 Query 164844 --CGCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCC--CTGTGGACATTGAT- 164898 ||| || || || | | || ||||| ||||||| || |||| | |||||| Sbjct 54640 AACGCAACCGTTGTATTGAAGATAGCCTTCATTGCTGCTCTCCTCCTGTATATATTGATT 54581 Query 164899 ---GGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACG--GTAACAACATCATCTCTG 164953 ||||||||| ||||||| | ||||| || | | | || | | |||||| Sbjct 54580 GATGGTATTCGTTAACCTGTTTCTCGTTCTATACCTTTCATAGAAATATTCTTCTCTCTG 54521 Query 164954 GT--------GCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTG 165005 || ||| | ||||| ||| | || || || || || | ||||| | Sbjct 54520 GTTAGTTAGTGCTATTATTCCGACTTTGACAGCTATAGG--TTGACGAC---CCTATCCG 54466 Query 165006 GGAAGC----TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCT-TACCAGTTGGTT 165060 |||||| |||| | || ||| ||||| ||||| || ||||| || || | || Sbjct 54465 GGAAGCAAGCTGCATCTGTGT-TGAGTGGTTCTACAATGGCGGTCCCGTAGAAGCTAATT 54407 Query 165061 GTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTAC 165120 || | ||||| | |||||||||| |||||||||| ||||| | | || | | Sbjct 54406 GTTTGACACTTATGACTTGGTGTAGCTTATTACATGGGTCCTGAGTTG---CCGTTTCAA 54350 Query 165121 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCC 165180 | |||||||||||||||||| || |||||| || ||| |||| |||| Sbjct 54349 TA--TAGGTATGCGTCCTTGGATTGCTGTTGCATATGATGC-----TCGTTGCTACTGC- 54298 Query 165181 GCAGTTTTCCTGGTCTATCCTTTCG---------GTCAAGGGAGTTTCTCTGA------- 165224 ||||||| || || | ||| | | ||||||| |||||||||| Sbjct 54297 --AGTTTTCTTGATCGACCCTATTGATTCTATTAGTCAAGGATGTTTCTCTGACGATATG 54240 Query 165225 ----------------TGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCG 165268 |||||||||| |||| || ||||||||||| ||| ||| | | Sbjct 54239 CCTTTAGGAATACAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTG 54180 Query 165269 TCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGG 165326 | || | |||||||| ||||| |||||||||| || |||||| | || || | |||| Sbjct 54179 TATTACTGGCAGAACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGG 54120 Query 165327 GGTATTCGG 165335 |||||||| Sbjct 54119 TGTATTCGG 54111 >seq10 Length=33665772 Score = 104 bits (114), Expect = 3e-17 Identities = 195/291 (67%), Gaps = 47/291 (16%) Strand=Plus/Plus Query 165079 GGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCT 165138 |||||||||| |||||||||| ||||| | | || | | | |||||||||||| Sbjct 4332732 GGTGTAGCTTATTACATGGGTCCTGAGTTG---CCGTTTCAATA--TAGGTATGCGTCCT 4332786 Query 165139 TGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTAT 165198 |||||| || |||||| || ||| |||| |||| ||||||| || || | Sbjct 4332787 TGGATTGCTGTTGCATATGATGC-----TCGTTGCTACTGC---AGTTTTCTTGATCGAC 4332838 Query 165199 CCTTTCG---------GTCAAGGGAGTTTCTCTGA-----------------------TG 165226 ||| | | ||||||| |||||||||| || Sbjct 4332839 CCTATTGATTCTATTAGTCAAGGATGTTTCTCTGACGATATGCCTTTAGGAATACAGATG 4332898 Query 165227 GTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATA 165286 |||||||| | || || ||||||||||| |||| ||| | || ||||| |||||||| | Sbjct 4332899 GTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACA 4332958 Query 165287 ACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG--CTGGGGTATTCGG 165335 |||| |||||||||| || |||||| | || || | |||| |||||||| Sbjct 4332959 ACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG 4333009 >seq4 Length=30051516 Score = 104 bits (114), Expect = 3e-17 Identities = 125/169 (74%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 165579 TGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGA 165638 |||| ||||||||||||| |||||||| || |||||||| |||||||| || | ||||| Sbjct 1282761 TGGTATTAGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA 1282820 Query 165639 TAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGT-- 165696 |||||| |||| ||| ||| ||| | | || |||||| ||| ||| Sbjct 1282821 CAGTCAGGGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTAT 1282878 Query 165697 --ATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCT 165743 |||||||| || ||||| ||||| ||||| |||||||| | ||||| Sbjct 1282879 GGATGGAAGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1042 Length=564079 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 165205 GGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 165264 |||||||| ||| | || ||||||||||||| || |||||||||||||| ||| ||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 165265 TTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCT 165324 | || ||||| || || || ||||| |||||||| || || ||||| | || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 165325 GGG 165327 ||| Sbjct 550740 GGG 550738 >seq1035 Length=594915 Score = 96.9 bits (106), Expect = 4e-15 Identities = 236/350 (67%), Gaps = 32/350 (9%) Strand=Plus/Plus Query 166686 AACTGGACACTGAACCCATTTCATATGATGGGTGT--AGCAGGTATTCTCGGTGGTGCAT 166743 || ||||| ||||||| || |||||||||| || || || |||| || | ||| Sbjct 237047 AATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TATTA--GGCGCTGCTC 237103 Query 166744 TGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAG- 166802 |||| | || || |||||| | ||| | |||||| | | |||||||| ||| | Sbjct 237104 TGCTATGCGCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGT-AACGGT 237158 Query 166803 GCAAATACTTTCAAG----GCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGT 166858 |||||||| | | || || || | ||||||| ||||| || ||||||||||| Sbjct 237159 GCAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGT 237218 Query 166859 TACAGCAAACCGCTATTGGTCTCAGATC-----TTCGGTATTGCGTTTAGTAATAAGAGG 166913 || || ||||| | |||||| || ||| || || |||| ||| ||||| | Sbjct 237219 CACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGT 237278 Query 166914 TGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCAT--CG 166971 ||| | ||||| | ||||| | || | ||| | |||| ||| | || | Sbjct 237279 TGG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGG 237330 Query 166972 GTATTA--TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCC 167019 ||| || | ||||| ||||| || || ||||| |||||||| ||||||| Sbjct 237331 GTAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCCC 237380 >seq1024 Length=717246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| | | ||||||||| || ||||||||||| |||||||| ||||| Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850 Query 165721 GCTCACAACTTCCCCCTCGACCT 165743 |||||||||||||| || ||||| Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563609654828160