Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq1042 104 3e-17 seq1382 100 3e-16 >seq9 Length=34148863 Score = 125 bits (138), Expect = 8e-24 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 170053 GGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTA 170112 ||||||||||||||||| ||| |||||||| ||||| || |||| || ||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 170113 TTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCA 170172 ||||| | || ||| | ||||| ||| |||||| || || |||||| |||| || || Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 170173 GGTACATTT-AACTTCATGT-TCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCAT 170230 | ||||| |||||||||| | ||||| | ||||| |||||||| |||||||| | Sbjct 1507073 AG--CATTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGG 1507130 Query 170231 TCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 | || ||| ||| || ||||| | ||| || Sbjct 1507131 TTCACATGTTAGGTGTAACTGGTGTATTCAGA 1507162 >seq1042 Length=564079 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 170131 GGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATG 170190 ||||| ||| | | ||||| || ||||||| || ||||| ||||| || |||||||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 170191 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCT 170250 | |||||||| || ||||||||||| |||||||||||||| | ||| ||| ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 170251 GG 170252 || Sbjct 550740 GG 550739 >seq1382 Length=172696 Score = 100 bits (110), Expect = 3e-16 Identities = 232/342 (68%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCT--GGTATGTTCGGAGGAG 170266 |||||||| |||||||| ||||| | ||| ||| | ||| ||| | ||||| || Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 170267 CACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAG 170326 | || ||| || ||||| ||||| | ||||| ||| | | ||||| || || || | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 170327 ATAACGAGTCA-CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA----TACAA 170381 | ||||| || || | | || |||| |||||| |||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 170382 CA-----TTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436 | |||| || || ||||| || || | || | ||| ||||||||||||| || Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 170437 AACAATAGTCG-TA-GTCTTCACTT--CTTCCTTGCTACATTCCCTGTAGTATGCATCTG 170492 ||||| ||| || |||| || | ||| | || | | || || | | ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 170493 GTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 | | || | | |||||| |||| ||||| || ||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582795113829600