Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq9 125 8e-24
seq1042 104 3e-17
seq1382 100 3e-16
>seq9
Length=34148863
Score = 125 bits (138), Expect = 8e-24
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 170053 GGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTA 170112
||||||||||||||||| ||| |||||||| ||||| || |||| || |||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 170113 TTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCA 170172
||||| | || ||| | ||||| ||| |||||| || || |||||| |||| || ||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 170173 GGTACATTT-AACTTCATGT-TCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCAT 170230
| ||||| |||||||||| | ||||| | ||||| |||||||| |||||||| |
Sbjct 1507073 AG--CATTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGG 1507130
Query 170231 TCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262
| || ||| ||| || ||||| | ||| ||
Sbjct 1507131 TTCACATGTTAGGTGTAACTGGTGTATTCAGA 1507162
>seq1042
Length=564079
Score = 104 bits (114), Expect = 3e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 170131 GGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATG 170190
||||| ||| | | ||||| || ||||||| || ||||| ||||| || ||||||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 170191 TTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCT 170250
| |||||||| || ||||||||||| |||||||||||||| | ||| ||| |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 170251 GG 170252
||
Sbjct 550740 GG 550739
>seq1382
Length=172696
Score = 100 bits (110), Expect = 3e-16
Identities = 232/342 (68%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 170209 CACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCT--GGTATGTTCGGAGGAG 170266
|||||||| |||||||| ||||| | ||| ||| | ||| ||| | ||||| ||
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 170267 CACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAG 170326
| || ||| || ||||| ||||| | ||||| ||| | | ||||| || || || |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 170327 ATAACGAGTCA-CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA----TACAA 170381
| ||||| || || | | || |||| |||||| |||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 170382 CA-----TTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436
| |||| || || ||||| || || | || | ||| ||||||||||||| ||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 170437 AACAATAGTCG-TA-GTCTTCACTT--CTTCCTTGCTACATTCCCTGTAGTATGCATCTG 170492
||||| ||| || |||| || | ||| | || | | || || | | |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 170493 GTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534
| | || | | |||||| |||| ||||| || ||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582795113829600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |