Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1382 167 3e-36 seq9 150 2e-31 seq1063 149 7e-31 seq10 134 2e-26 seq1042 95.1 1e-14 >seq1382 Length=172696 Score = 167 bits (184), Expect = 3e-36 Identities = 248/344 (72%), Gaps = 17/344 (5%) Strand=Plus/Minus Query 84111 TTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGC 84170 || || || || ||||||||||||| ||| | ||| | | ||| || |||| |||||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 84171 CAAGCAGCCAAGAA--AAAGTGGAGA--GAACGACTATTGTTGAAGGAAGCATACTGGAA 84226 ||||| |||||||| | || ||| | ||| |||||||| |||||| |||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 84227 GATAAGACGACCGAAGTAGCCGTGAGCAGCAACAA-----TATTATAAGT---TTCC-TC 84277 ||| | || | || || || |||||||| |||| |||| ||||| |||| || Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTG-TGAGACATTTTCTGTAGTTTCTCGGATTA 84336 |||||||||||| ||||||| | | || || | ||||| || ||||| | ||| | Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 84337 GAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACC-- 84394 | ||| || || | ||||||||||| ||| |||||| | || ||||||||||| Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539 Query 84395 AGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTT 84438 ||| | || ||||||| || ||||||||||||||||| |||| Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495 >seq9 Length=34148863 Score = 150 bits (166), Expect = 2e-31 Identities = 182/245 (74%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 84386 GAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTG 84445 ||||||||||| || || |||||||||| |||||||||||||||| ||||| ||| | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 84446 GAAGACAAG-CATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAG 84504 || |||| |||| ||||||| | | || || || | ||||| |||||||||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 84505 AACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGT 84564 ||||| || | ||| || | | ||| ||||||| || |||||||| ||||| || | Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981 Query 84565 AAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCA 84624 | |||||| ||||| ||||||||||| ||| | |||||| | ||| || | | Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTCATACTCATGATCAA 1506921 Query 84625 TGTAA 84629 ||||| Sbjct 1506920 TGTAA 1506916 >seq1063 Length=431445 Score = 149 bits (164), Expect = 7e-31 Identities = 238/338 (70%), Gaps = 19/338 (6%) Strand=Plus/Plus Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAG 84227 ||||| ||||||||||| || || | ||||||| |||||||| |||||| |||||| Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957 Query 84228 ATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATA------AGTTTCCTCTTCT 84281 || | || | || || || |||||||| |||||| | || ||| || || ||| Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017 Query 84282 TGACCGAACTTGTAACCATAGTTTTGTG-AGACATTTTCTGTAGTTTCTCGGATTAGAGA 84340 | |||||| || || | | | | | | ||||| || |||| | ||| | | | Sbjct 54018 TTACCGAATCAGTCACT-TGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAACA 54076 Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAG--CA 84398 ||| ||| | ||||||||||| | | ||| || |||||||||||| | Sbjct 54077 AGAGTGGACCAAGGAACCATGCATAGTAC----TAGGGC-----CGAATACACCAGAGCT 54127 Query 84399 ACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATG 84458 || || ||||||||||| |||||||||||||||| ||||| ||| | || |||| |||| Sbjct 54128 ACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCATG 54187 Query 84459 TAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATC 84496 ||| ||| || || || || |||| ||||| ||||| Sbjct 54188 AAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 >seq10 Length=33665772 Score = 134 bits (148), Expect = 2e-26 Identities = 238/339 (70%), Gaps = 21/339 (6%) Strand=Plus/Minus Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTA-TTGTTGAAGGAAGCATACTGGAA 84226 ||||| ||||||||||| || || |||| | | | |||||||| |||||| ||| | Sbjct 4333222 GGCCACGCAGCCAAGAAGAAATGTCAAGAA-GTCGAGTTGTTGAAACTAGCATATTGGCA 4333164 Query 84227 GATAAGACGACCGAAGTAGCCGTGAGCAGCAACAAT-----ATTATAA-GTTTCCTCTTC 84280 | | | || | || || || |||||| | ||||| ||| ||| || || || || Sbjct 4333163 GTTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCTC 4333104 Query 84281 TTGACCGAACTTGTAACCATAGTTTTGTG-AGACATTTTCTGTAGTTTCTCGGATTAGAG 84339 || |||||| || || | | | | | | ||||| || |||| | ||| | | Sbjct 4333103 TTTACCGAATCAGTCACT-TGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 4333045 Query 84340 AAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAG--C 84397 |||| |||| | ||||||||||| | | ||| || |||||||||||| | Sbjct 4333044 AAGAGTTGACCAAGGAACCATGCATAGTAC----TAGGGC-----CGAATACACCAGAGC 4332994 Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457 || || ||||||||||| |||||||||||||||| ||||| |||||||| |||| ||| Sbjct 4332993 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATCAT 4332934 Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATC 84496 | ||||||| || || || || || | ||||| ||||| Sbjct 4332933 GAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1042 Length=564079 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||||| || ||||||| ||| || |||||||||||||| || || |||||||| ||| Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGA 84499 | |||| ||| ||| || || ||||| || | ||||| ||||| || Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGA 550845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571221764061720