Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 167 3e-36
seq9 150 2e-31
seq1063 149 7e-31
seq10 134 2e-26
seq1042 95.1 1e-14
>seq1382
Length=172696
Score = 167 bits (184), Expect = 3e-36
Identities = 248/344 (72%), Gaps = 17/344 (5%)
Strand=Plus/Minus
Query 84111 TTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGC 84170
|| || || || ||||||||||||| ||| | ||| | | ||| || |||| ||||||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 84171 CAAGCAGCCAAGAA--AAAGTGGAGA--GAACGACTATTGTTGAAGGAAGCATACTGGAA 84226
||||| |||||||| | || ||| | ||| |||||||| |||||| ||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 84227 GATAAGACGACCGAAGTAGCCGTGAGCAGCAACAA-----TATTATAAGT---TTCC-TC 84277
||| | || | || || || |||||||| |||| |||| ||||| |||| ||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTG-TGAGACATTTTCTGTAGTTTCTCGGATTA 84336
|||||||||||| ||||||| | | || || | ||||| || ||||| | ||| |
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 84337 GAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACC-- 84394
| ||| || || | ||||||||||| ||| |||||| | || |||||||||||
Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539
Query 84395 AGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTT 84438
||| | || ||||||| || ||||||||||||||||| ||||
Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495
>seq9
Length=34148863
Score = 150 bits (166), Expect = 2e-31
Identities = 182/245 (74%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 84386 GAATACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTG 84445
||||||||||| || || |||||||||| |||||||||||||||| ||||| ||| |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 84446 GAAGACAAG-CATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAG 84504
|| |||| |||| ||||||| | | || || || | ||||| ||||||||||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041
Query 84505 AACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGT 84564
||||| || | ||| || | | ||| ||||||| || |||||||| ||||| || |
Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981
Query 84565 AAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCA 84624
| |||||| ||||| ||||||||||| ||| | |||||| | ||| || | |
Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTCATACTCATGATCAA 1506921
Query 84625 TGTAA 84629
|||||
Sbjct 1506920 TGTAA 1506916
>seq1063
Length=431445
Score = 149 bits (164), Expect = 7e-31
Identities = 238/338 (70%), Gaps = 19/338 (6%)
Strand=Plus/Plus
Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAG 84227
||||| ||||||||||| || || | ||||||| |||||||| |||||| ||||||
Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957
Query 84228 ATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATA------AGTTTCCTCTTCT 84281
|| | || | || || || |||||||| |||||| | || ||| || || |||
Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017
Query 84282 TGACCGAACTTGTAACCATAGTTTTGTG-AGACATTTTCTGTAGTTTCTCGGATTAGAGA 84340
| |||||| || || | | | | | | ||||| || |||| | ||| | | |
Sbjct 54018 TTACCGAATCAGTCACT-TGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAACA 54076
Query 84341 AGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAG--CA 84398
||| ||| | ||||||||||| | | ||| || |||||||||||| |
Sbjct 54077 AGAGTGGACCAAGGAACCATGCATAGTAC----TAGGGC-----CGAATACACCAGAGCT 54127
Query 84399 ACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATG 84458
|| || ||||||||||| |||||||||||||||| ||||| ||| | || |||| ||||
Sbjct 54128 ACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCATG 54187
Query 84459 TAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATC 84496
||| ||| || || || || |||| ||||| |||||
Sbjct 54188 AAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225
>seq10
Length=33665772
Score = 134 bits (148), Expect = 2e-26
Identities = 238/339 (70%), Gaps = 21/339 (6%)
Strand=Plus/Minus
Query 84168 GGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTA-TTGTTGAAGGAAGCATACTGGAA 84226
||||| ||||||||||| || || |||| | | | |||||||| |||||| ||| |
Sbjct 4333222 GGCCACGCAGCCAAGAAGAAATGTCAAGAA-GTCGAGTTGTTGAAACTAGCATATTGGCA 4333164
Query 84227 GATAAGACGACCGAAGTAGCCGTGAGCAGCAACAAT-----ATTATAA-GTTTCCTCTTC 84280
| | | || | || || || |||||| | ||||| ||| ||| || || || ||
Sbjct 4333163 GTTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCTC 4333104
Query 84281 TTGACCGAACTTGTAACCATAGTTTTGTG-AGACATTTTCTGTAGTTTCTCGGATTAGAG 84339
|| |||||| || || | | | | | | ||||| || |||| | ||| | |
Sbjct 4333103 TTTACCGAATCAGTCACT-TGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 4333045
Query 84340 AAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAG--C 84397
|||| |||| | ||||||||||| | | ||| || |||||||||||| |
Sbjct 4333044 AAGAGTTGACCAAGGAACCATGCATAGTAC----TAGGGC-----CGAATACACCAGAGC 4332994
Query 84398 AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCAT 84457
|| || ||||||||||| |||||||||||||||| ||||| |||||||| |||| |||
Sbjct 4332993 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATCAT 4332934
Query 84458 GTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATC 84496
| ||||||| || || || || || | ||||| |||||
Sbjct 4332933 GAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
>seq1042
Length=564079
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452
||||||| || ||||||| ||| || |||||||||||||| || || |||||||| |||
Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798
Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGA 84499
| |||| ||| ||| || || ||||| || | ||||| ||||| ||
Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGA 550845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571221764061720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |