Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq6 105 8e-18
seq11 104 3e-17
>seq6
Length=34899179
Score = 105 bits (116), Expect = 8e-18
Identities = 145/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | ||||||| || | || |||| |||||| |||||||||
Sbjct 13941176 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACCA 13941235
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| || || |||||||| || | |||| || || || |||
Sbjct 13941236 TTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGAA 13941295
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || || ||||| ||||||| ||||| |||||||| ||
Sbjct 13941296 ACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATATC 13941355
Query 48540 CCTTCTATACTATCATCTATCAT 48562
|| || || ||||| ||| ||||
Sbjct 13941356 CCCTCAATGCTATCTTCTTTCAT 13941378
>seq11
Length=25514024
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418
|||||||||||| | ||| | ||||||| || | || |||| ||| || ||||||||
Sbjct 20144382 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 20144323
Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478
||| ||| | ||||| || || ||||||||||| | || | || || || ||
Sbjct 20144322 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 20144263
Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538
|| || || || || || || ||||| ||||||| || || |||||||| ||
Sbjct 20144262 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 20144203
Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580
||| || || ||||| ||| |||| || || ||||||||
Sbjct 20144202 TCCCTCAATGCTATCTTCTTTCATGCATACGAGGAAACAACT 20144161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562057795652760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |