Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq9 156 1e-33
seq1063 129 2e-25
seq10 123 8e-24
seq1042 113 1e-20
seq1024 109 2e-19
>seq9
Length=34148863
Score = 156 bits (172), Expect = 1e-33
Identities = 174/227 (77%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667
|||||| |||| ||||| | |||||| | | ||||||||||||| |||||||||||| |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 5668 GAATACGA-ACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAAC 5726
||||| | |||| ||||| ||| | | ||| || || | ||||||||||||| |||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041
Query 5727 TTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAA 5785
|||| || || | |||||| | || || || | ||||| | || ||||| || ||||||
Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAA 1506982
Query 5786 TATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTC 5832
||||| || |||||| || ||||| || | | ||||||||||
Sbjct 1506981 TATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTC 1506935
>seq1063
Length=431445
Score = 129 bits (142), Expect = 2e-25
Identities = 237/341 (70%), Gaps = 25/341 (7%)
Strand=Plus/Plus
Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449
||||| | ||||| ||||||||||||| ||| ||||| || |||||||| ||||||
Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957
Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC------GTTTCTTCCTCT 5503
|| | || | || || |||||||| || ||||| | || || |||||||||
Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017
Query 5504 TGGCCGAAT---TTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGC 5560
| |||||| | | | | || | || || | ||| |||| | ||||
Sbjct 54018 TTACCGAATCAGTCACTTGC-TAACGCGGATTCGTTTTC--AGTGATTTCCCTGATGAAA 54074
Query 5561 GAAGAA-GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAG- 5618
|||| | | |||| |||||||||| | | | | |||||||| ||||
Sbjct 54075 CAAGAGTGGACCAAGGAA-CCATGCATAGTA-----CTAGGG----CCGAATACACCAGA 54124
Query 5619 -CAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAAC 5677
| ||||| | |||||| || ||||||||||||| |||||||||||| | ||||| | |
Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184
Query 5678 ATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATC 5718
|| |||| ||||||||||| || |||| ||||||||||||
Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225
>seq10
Length=33665772
Score = 123 bits (136), Expect = 8e-24
Identities = 97/115 (84%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 5606 CCGAATACCCCAG--CAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663
|||||||| |||| | ||||| | |||||| || ||||||||||||| ||||||||||
Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950
Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATC 5718
|||||||||| | ||| ||||| ||||||||||| || || | ||||||||||||
Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
>seq1042
Length=564079
Score = 113 bits (124), Expect = 1e-20
Identities = 101/125 (81%), Gaps = 4/125 (3%)
Strand=Plus/Plus
Query 5614 CCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATAC 5673
|||||||| ||| | ||||| || || ||||||||||| ||||| || |||||||||||
Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797
Query 5674 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA--ACTTCCC 5731
| ||| |||| |||||||||||||| || |||||||||||| ||||| ||||||
Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCAT--CTGAAACACTTCCT 550855
Query 5732 TGTCC 5736
|| ||
Sbjct 550856 TGACC 550860
>seq1024
Length=717246
Score = 109 bits (120), Expect = 2e-19
Identities = 75/85 (88%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5197 TAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGC 5256
||| || || ||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 156874 TAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGC 156815
Query 5257 ACGGTTCAGGACATCTGCCCAAGTG 5281
|||||| | || ||| |||||||||
Sbjct 156814 ACGGTTGATGATATCAGCCCAAGTG 156790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152636441509074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |