Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq9 156 1e-33 seq1063 129 2e-25 seq10 123 8e-24 seq1042 113 1e-20 seq1024 109 2e-19 >seq9 Length=34148863 Score = 156 bits (172), Expect = 1e-33 Identities = 174/227 (77%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| |||| ||||| | |||||| | | ||||||||||||| |||||||||||| | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 5668 GAATACGA-ACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAAC 5726 ||||| | |||| ||||| ||| | | ||| || || | ||||||||||||| ||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 5727 TTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAA 5785 |||| || || | |||||| | || || || | ||||| | || ||||| || |||||| Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAA 1506982 Query 5786 TATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTC 5832 ||||| || |||||| || ||||| || | | |||||||||| Sbjct 1506981 TATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTC 1506935 >seq1063 Length=431445 Score = 129 bits (142), Expect = 2e-25 Identities = 237/341 (70%), Gaps = 25/341 (7%) Strand=Plus/Plus Query 5390 GGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAG 5449 ||||| | ||||| ||||||||||||| ||| ||||| || |||||||| |||||| Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957 Query 5450 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC------GTTTCTTCCTCT 5503 || | || | || || |||||||| || ||||| | || || ||||||||| Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017 Query 5504 TGGCCGAAT---TTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGC 5560 | |||||| | | | | || | || || | ||| |||| | |||| Sbjct 54018 TTACCGAATCAGTCACTTGC-TAACGCGGATTCGTTTTC--AGTGATTTCCCTGATGAAA 54074 Query 5561 GAAGAA-GTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAG- 5618 |||| | | |||| |||||||||| | | | | |||||||| |||| Sbjct 54075 CAAGAGTGGACCAAGGAA-CCATGCATAGTA-----CTAGGG----CCGAATACACCAGA 54124 Query 5619 -CAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAAC 5677 | ||||| | |||||| || ||||||||||||| |||||||||||| | ||||| | | Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184 Query 5678 ATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATC 5718 || |||| ||||||||||| || |||| |||||||||||| Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 >seq10 Length=33665772 Score = 123 bits (136), Expect = 8e-24 Identities = 97/115 (84%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 5606 CCGAATACCCCAG--CAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTG 5663 |||||||| |||| | ||||| | |||||| || ||||||||||||| |||||||||| Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950 Query 5664 CCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATC 5718 |||||||||| | ||| ||||| ||||||||||| || || | |||||||||||| Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1042 Length=564079 Score = 113 bits (124), Expect = 1e-20 Identities = 101/125 (81%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 5614 CCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATAC 5673 |||||||| ||| | ||||| || || ||||||||||| ||||| || ||||||||||| Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797 Query 5674 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA--ACTTCCC 5731 | ||| |||| |||||||||||||| || |||||||||||| ||||| |||||| Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCAT--CTGAAACACTTCCT 550855 Query 5732 TGTCC 5736 || || Sbjct 550856 TGACC 550860 >seq1024 Length=717246 Score = 109 bits (120), Expect = 2e-19 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5197 TAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGC 5256 ||| || || ||||||||||||||||| ||||| ||||||||||||||||||||||| || Sbjct 156874 TAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGC 156815 Query 5257 ACGGTTCAGGACATCTGCCCAAGTG 5281 |||||| | || ||| ||||||||| Sbjct 156814 ACGGTTGATGATATCAGCCCAAGTG 156790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152636441509074