Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq9 176 1e-39 seq1063 102 2e-17 seq10 102 2e-17 seq1042 95.1 4e-15 seq1382 87.8 5e-13 seq1024 84.2 7e-12 >seq9 Length=34148863 Score = 176 bits (194), Expect = 1e-39 Identities = 176/226 (78%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 25866 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 25925 |||||| || | ||||| | ||| || | | ||||||||||||| |||||||||||| | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 25926 AAAGACAA-ACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAAC 25984 ||| |||| |||| || |||||| | | || || || | |||||||||||||||||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 25985 TCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAAT 26044 | ||||| |||| |||||||| ||||| |||||| || ||||||||||| ||||||| Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981 Query 26045 AAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTC 26090 | || ||| ||||| || | ||| || || |||||||||| Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTC 1506935 >seq1063 Length=431445 Score = 102 bits (112), Expect = 2e-17 Identities = 230/340 (68%), Gaps = 23/340 (7%) Strand=Plus/Plus Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707 ||||| ||||||| ||||||||||||| ||| || || || |||||||| |||||| Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957 Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC------GTCTCTTCTTCT 25761 || | || | || || |||||||| || ||||| | || |||||||| ||| Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017 Query 25762 TGGCCGAATTTATATCCATAGTT--CTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTG 25819 | |||||| | | | | | | ||||| |||| |||| | || | Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075 Query 25820 AGGAA-GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG-- 25876 | || | | |||| || ||||||| | || || ||||||| || | Sbjct 54076 AAGAGTGGACCAAGGAA-CCATGCATAGTAC----TAGGGC-----CGAATACACCAGAG 54125 Query 25877 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACA 25936 | ||||| | ||| || || ||||||||||||| |||||||||||| | || |||| || Sbjct 54126 CTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCA 54185 Query 25937 TAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 | || | |||||| || || || |||| |||||||||||| Sbjct 54186 TGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 >seq10 Length=33665772 Score = 102 bits (112), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 25864 CCGAATACCCCTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTG 25921 |||||||| || | | ||||| | ||| || || ||||||||||||| |||||||||| Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950 Query 25922 CCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 |||| || |||| ||| || |||||||| || || || || | |||||||||||| Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1042 Length=564079 Score = 95.1 bits (104), Expect = 4e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25872 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931 ||| |||| ||| | ||| | || || ||||||||||| ||||| || ||||| || || Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797 Query 25932 AAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 25991 || ||| || | |||||| || || || || ||||||||||||| || | ||| ||||| Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857 Query 25992 TCCAA 25996 |||| Sbjct 550858 ACCAA 550862 >seq1382 Length=172696 Score = 87.8 bits (96), Expect = 5e-13 Identities = 234/347 (67%), Gaps = 23/347 (7%) Strand=Plus/Minus Query 25591 TTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGC 25650 ||||| || |||||||| ||| | || | ||| || | ||| || | | | || ||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 25651 CAAGCAGCCAGGAAGAAATGTAAACTACG-GCTA---TTATTAAAGCTAGCATACTGGAA 25706 ||||| |||| ||| |||| || | || | || || || |||||||| |||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 25707 GATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG-----TTATACGTCTCTTC---- 25757 ||| | || | || || |||||||| || ||||| || || |||||||| Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 25758 TTCTTGGCCGAATTTATATCCATAGTTCTG-AGATTCAAGCCCAGTTGTTTCACGAAT-- 25814 |||||| |||||| | || || | | || |||||| |||| ||||| | || Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 25815 AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC 25873 || | |||| || |||| || ||||||||| ||||| | || |||||||| | Sbjct 123598 AACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAATACAC 123542 Query 25874 CTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 25918 | | | | ||| | ||| | || |||||||||||||| ||||||| Sbjct 123541 CAGAGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495 >seq1024 Length=717246 Score = 84.2 bits (92), Expect = 7e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 25455 TAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGC 25514 || ||| |||||||||||||| || ||||| |||||||| |||||||| || | || || Sbjct 156874 TAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGC 156815 Query 25515 ACGGTTAAGAATGTCAGCCCAAGT 25538 |||||| | || ||||||||||| Sbjct 156814 ACGGTTGATGATATCAGCCCAAGT 156791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151980498056684