Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq9 176 1e-39
seq1063 102 2e-17
seq10 102 2e-17
seq1042 95.1 4e-15
seq1382 87.8 5e-13
seq1024 84.2 7e-12
>seq9
Length=34148863
Score = 176 bits (194), Expect = 1e-39
Identities = 176/226 (78%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 25866 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 25925
|||||| || | ||||| | ||| || | | ||||||||||||| |||||||||||| |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 25926 AAAGACAA-ACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAAC 25984
||| |||| |||| || |||||| | | || || || | ||||||||||||||||||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041
Query 25985 TCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAAT 26044
| ||||| |||| |||||||| ||||| |||||| || ||||||||||| |||||||
Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981
Query 26045 AAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTC 26090
| || ||| ||||| || | ||| || || ||||||||||
Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTC 1506935
>seq1063
Length=431445
Score = 102 bits (112), Expect = 2e-17
Identities = 230/340 (68%), Gaps = 23/340 (7%)
Strand=Plus/Plus
Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707
||||| ||||||| ||||||||||||| ||| || || || |||||||| ||||||
Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957
Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC------GTCTCTTCTTCT 25761
|| | || | || || |||||||| || ||||| | || |||||||| |||
Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017
Query 25762 TGGCCGAATTTATATCCATAGTT--CTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTG 25819
| |||||| | | | | | | ||||| |||| |||| | || |
Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075
Query 25820 AGGAA-GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG-- 25876
| || | | |||| || ||||||| | || || ||||||| || |
Sbjct 54076 AAGAGTGGACCAAGGAA-CCATGCATAGTAC----TAGGGC-----CGAATACACCAGAG 54125
Query 25877 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACA 25936
| ||||| | ||| || || ||||||||||||| |||||||||||| | || |||| ||
Sbjct 54126 CTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCA 54185
Query 25937 TAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
| || | |||||| || || || |||| ||||||||||||
Sbjct 54186 TGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225
>seq10
Length=33665772
Score = 102 bits (112), Expect = 2e-17
Identities = 92/115 (80%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 25864 CCGAATACCCCTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTG 25921
|||||||| || | | ||||| | ||| || || ||||||||||||| ||||||||||
Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950
Query 25922 CCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
|||| || |||| ||| || |||||||| || || || || | ||||||||||||
Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
>seq1042
Length=564079
Score = 95.1 bits (104), Expect = 4e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 25872 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGAC 25931
||| |||| ||| | ||| | || || ||||||||||| ||||| || ||||| || ||
Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797
Query 25932 AAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 25991
|| ||| || | |||||| || || || || ||||||||||||| || | ||| |||||
Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857
Query 25992 TCCAA 25996
||||
Sbjct 550858 ACCAA 550862
>seq1382
Length=172696
Score = 87.8 bits (96), Expect = 5e-13
Identities = 234/347 (67%), Gaps = 23/347 (7%)
Strand=Plus/Minus
Query 25591 TTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGC 25650
||||| || |||||||| ||| | || | ||| || | ||| || | | | || |||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 25651 CAAGCAGCCAGGAAGAAATGTAAACTACG-GCTA---TTATTAAAGCTAGCATACTGGAA 25706
||||| |||| ||| |||| || | || | || || || |||||||| ||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 25707 GATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATG-----TTATACGTCTCTTC---- 25757
||| | || | || || |||||||| || ||||| || || ||||||||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 25758 TTCTTGGCCGAATTTATATCCATAGTTCTG-AGATTCAAGCCCAGTTGTTTCACGAAT-- 25814
|||||| |||||| | || || | | || |||||| |||| ||||| | ||
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 25815 AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC 25873
|| | |||| || |||| || ||||||||| ||||| | || |||||||| |
Sbjct 123598 AACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAATACAC 123542
Query 25874 CTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 25918
| | | | ||| | ||| | || |||||||||||||| |||||||
Sbjct 123541 CAGAGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495
>seq1024
Length=717246
Score = 84.2 bits (92), Expect = 7e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 25455 TAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGC 25514
|| ||| |||||||||||||| || ||||| |||||||| |||||||| || | || ||
Sbjct 156874 TAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGC 156815
Query 25515 ACGGTTAAGAATGTCAGCCCAAGT 25538
|||||| | || |||||||||||
Sbjct 156814 ACGGTTGATGATATCAGCCCAAGT 156791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151980498056684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |