Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq10 118 8e-22
seq6 114 1e-20
seq9 89.7 4e-13
seq11 87.8 1e-12
seq5 86.0 5e-12
seq4 86.0 5e-12
>seq10
Length=33665772
Score = 118 bits (130), Expect = 8e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || |||||||| || || | || | |||| || |||||
Sbjct 14516045 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCATCCTCTAATTGT 14516104
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || || | || || || || ||||| || |||||||||||||||||
Sbjct 14516105 TTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTATCTTGAATTTTA 14516164
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | ||| || || | ||| |||||||| |||| || ||||||||
Sbjct 14516165 GCTTTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGATGGTCTTGCCGGTG 14516224
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| ||| || | ||||| |||||
Sbjct 14516225 AGAGTCTTAATGAATATTTGCAT 14516247
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395
|| ||||| | |||||| || || || ||||| || || |||||||| || ||||||
Sbjct 14516990 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTTACA 14517049
Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455
| || | ||||||||| | ||| || ||||| |||| || |||||||||| || ||
Sbjct 14517050 TTATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTA 14517109
Query 101456 ACAAATATCTGCAT 101469
||||||||||||||
Sbjct 14517110 ACAAATATCTGCAT 14517123
>seq6
Length=34899179
Score = 114 bits (126), Expect = 1e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || ||||| || ||||| || || | || | | |||| || | ||||
Sbjct 13144365 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGC 13144306
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||||||||| | || || || || || || || || ||||| || || ||
Sbjct 13144305 TTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTG 13144246
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| | || | |||||||| | ||| || ||||| |||| ||| || || ||
Sbjct 13144245 GCTTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTG 13144186
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| |||||| ||||| || |||||
Sbjct 13144185 AGAGTTTTGACAAAGATTTGCAT 13144163
Score = 98.7 bits (108), Expect = 8e-16
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| || || ||||||||||| || || ||||| || || || | || | | |||| |||
Sbjct 13154524 ACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGCCAAGGTGCGGCCATCCTCC 13154465
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || ||||| || | | ||| || || || |||||||| || || || ||
Sbjct 13154464 AATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGT 13154405
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| ||| || ||| | || | |||||| || | || || ||||| |||| || ||
Sbjct 13154404 ATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCAAGGGTGATGGTCTTA 13154345
Query 101441 CCGG 101444
||||
Sbjct 13154344 CCGG 13154341
>seq9
Length=34148863
Score = 89.7 bits (98), Expect = 4e-13
Identities = 130/184 (71%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||||||||| || || || || |||||||| || | || | | |||| || | |||
Sbjct 33549221 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGC 33549280
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | || || || || ||||| || || || || ||||| ||
Sbjct 33549281 TTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTG 33549340
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|||||| | || | ||||| || | ||||| ||||| |||| || || |||||
Sbjct 33549341 GCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCGGTC 33549400
Query 101447 AAAG 101450
||||
Sbjct 33549401 AAAG 33549404
>seq11
Length=25514024
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
||||| || || || || || || ||||| || || | ||| | | | || || | |||
Sbjct 16241439 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGC 16241498
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| || | | || || || || ||||||||||| || || ||||| ||
Sbjct 16241499 TTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTG 16241558
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| || | || | ||||| || | || ||||| || |||| ||| || |||||
Sbjct 16241559 GCCTTCACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTG 16241618
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 16241619 AGCGTCTTCACAAAGATCTGCAT 16241641
>seq5
Length=29377369
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320
|| ||||||||||||||||| || || || ||||||||| | || | | |||| |||
Sbjct 457733 ACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGCTAAGGTGCGGCCATCTTCC 457674
Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380
|||||||| || ||||| || | | || || || || || || || || |||||
Sbjct 457673 AATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGGGATACCCTCCTTGTCTTGC 457614
Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440
|| || || ||| | || | ||||| || | || || || || ||| ||||||
Sbjct 457613 ATCTTAGCCTTCACATTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGGTGGTTTTG 457554
Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470
||||| | || || | || || ||||||
Sbjct 457553 CCGGTAAGGGTCTTGATGAAGATTTGCATG 457524
>seq4
Length=30051516
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319
||| | |||||| || || ||||| || || ||||| || || | ||||||| |||| ||
Sbjct 3354414 AACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCTGCCATCTTC 3354355
Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379
||||||||| || ||||| ||||| | ||| ||||| || | || || || || || ||
Sbjct 3354354 CAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGGCTATTCCCTCCTTGTCCTG 3354295
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396243341621463
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |