Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq10 118 8e-22 seq6 114 1e-20 seq9 89.7 4e-13 seq11 87.8 1e-12 seq5 86.0 5e-12 seq4 86.0 5e-12 >seq10 Length=33665772 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || |||||||| || || | || | |||| || ||||| Sbjct 14516045 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCAAGGGTGCGACCATCCTCTAATTGT 14516104 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || || | || || || || ||||| || ||||||||||||||||| Sbjct 14516105 TTCCCAGCAAAGATTAACCTTTGCTGGTCCGGTGGAATACCCTCTTTATCTTGAATTTTA 14516164 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | ||| || || | ||| |||||||| |||| || |||||||| Sbjct 14516165 GCTTTCACATTATCAATAGTATCGGAAGATTCAACTTCAAGGGTGATGGTCTTGCCGGTG 14516224 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || | ||||| ||||| Sbjct 14516225 AGAGTCTTAATGAATATTTGCAT 14516247 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101336 AATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACA 101395 || ||||| | |||||| || || || ||||| || || |||||||| || |||||| Sbjct 14516990 AAGATCAACCTCTGTTGGTCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTTACA 14517049 Query 101396 ATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTT 101455 | || | ||||||||| | ||| || ||||| |||| || |||||||||| || || Sbjct 14517050 TTATCAATAGTGTCAGAAGATTCAACCTCAAGGGTGATGGTCTTGCCGGTTAGTGTCTTA 14517109 Query 101456 ACAAATATCTGCAT 101469 |||||||||||||| Sbjct 14517110 ACAAATATCTGCAT 14517123 >seq6 Length=34899179 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || ||||| || ||||| || || | || | | |||| || | |||| Sbjct 13144365 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGTTGC 13144306 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||||||||| | || || || || || || || || ||||| || || || Sbjct 13144305 TTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTTATCCTGGATCTTG 13144246 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | |||||||| | ||| || ||||| |||| ||| || || || Sbjct 13144245 GCTTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATCGTCTTTCCAGTG 13144186 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | |||||| ||||| || ||||| Sbjct 13144185 AGAGTTTTGACAAAGATTTGCAT 13144163 Score = 98.7 bits (108), Expect = 8e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||||||||| || || ||||| || || || | || | | |||| ||| Sbjct 13154524 ACCAAGTGGAGGGTAGATTCCTTCTGGATATTATAGTCAGCCAAGGTGCGGCCATCCTCC 13154465 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | | ||| || || || |||||||| || || || || Sbjct 13154464 AATTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGT 13154405 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| || ||| | || | |||||| || | || || ||||| |||| || || Sbjct 13154404 ATCTTTGCCTTCACATTGTCGATAGTGTCCGAGCTCTCAACCTCAAGGGTGATGGTCTTA 13154345 Query 101441 CCGG 101444 |||| Sbjct 13154344 CCGG 13154341 >seq9 Length=34148863 Score = 89.7 bits (98), Expect = 4e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || |||||||| || | || | | |||| || | ||| Sbjct 33549221 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGC 33549280 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | || || || || ||||| || || || || ||||| || Sbjct 33549281 TTGCCAGCAAAGATGAGCCTTTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTG 33549340 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | ||||| || | ||||| ||||| |||| || || ||||| Sbjct 33549341 GCCTTTACATTGTCGATGGTGTCCGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCGGTC 33549400 Query 101447 AAAG 101450 |||| Sbjct 33549401 AAAG 33549404 >seq11 Length=25514024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || || || || || || ||||| || || | ||| | | | || || | ||| Sbjct 16241439 TGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCAAGAGTACGGCCGTCCTCGAGCTGC 16241498 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | | || || || || ||||||||||| || || ||||| || Sbjct 16241499 TTGCCCGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGAATCTTG 16241558 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | || ||||| || |||| ||| || ||||| Sbjct 16241559 GCCTTCACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGGGTGATCGTCTTCCCGGTG 16241618 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 16241619 AGCGTCTTCACAAAGATCTGCAT 16241641 >seq5 Length=29377369 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||||||||| || || || ||||||||| | || | | |||| ||| Sbjct 457733 ACCAAATGAAGGGTAGATTCCTTGTGGATGGAGTAATCGGCTAAGGTGCGGCCATCTTCC 457674 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | | || || || || || || || || ||||| Sbjct 457673 AATTGCTTGCCGGCAAAGATGAGCCTTTGCTGGTCCACAGGGATACCCTCCTTGTCTTGC 457614 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | ||||| || | || || || || ||| |||||| Sbjct 457613 ATCTTAGCCTTCACATTCTCGATGGTGTCCGAGCTCTCGACCTCGAGGGTGGTGGTTTTG 457554 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| | || || | || || |||||| Sbjct 457553 CCGGTAAGGGTCTTGATGAAGATTTGCATG 457524 >seq4 Length=30051516 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| | |||||| || || ||||| || || ||||| || || | ||||||| |||| || Sbjct 3354414 AACCAGATGAAGTGTCGACTCTTTCTGGATGTTGTAGTCTGCAAGAGTTCTGCCATCTTC 3354355 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||||||| || ||||| ||||| | ||| ||||| || | || || || || || || Sbjct 3354354 CAATTGCTTCCCAGCAAAAATCAATCTCTGCTGATCCGGGGCTATTCCCTCCTTGTCCTG 3354295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396243341621463