Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 145 8e-30
seq1382 136 4e-27
seq10 132 5e-26
seq9 120 3e-22
seq4 93.3 5e-14
seq1024 87.8 2e-12
>seq1063
Length=431445
Score = 145 bits (160), Expect = 8e-30
Identities = 237/336 (71%), Gaps = 23/336 (7%)
Strand=Plus/Minus
Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023
|||||| |||| || ||||||||||| ||| |||| | || || | ||||| ||||||
Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160
Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA--GGTGTATTCGGTGGTTCACTCT 163081
||||| ||||| | || || ||| | || || || ||||||||||| |
Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG---------CC 54109
Query 163082 TTAGTGCTATGCACGGTTCTCTTGTTACT-TCTTCTCTTATCAGAGAAACTACTGAGCAA 163140
|||| ||||||| ||||| |||| | | |||| | | ||||| |||| ||||| |
Sbjct 54108 CTAGTACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAAC 54050
Query 163141 GAGTCACAG--AACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTT-ACAACA----- 163192
|| || | | | | || | ||||| |||| |||||||||| |||| |
Sbjct 54049 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTA 53992
Query 163193 TTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACT 163252
|||| ||||||||||| || || | || ||||||||||| ||||| |||||||||||
Sbjct 53991 TTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 53932
Query 163253 CACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288
| ||||| | || |||||| | ||||| | ||||
Sbjct 53931 CTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq1382
Length=172696
Score = 136 bits (150), Expect = 4e-27
Identities = 240/343 (70%), Gaps = 19/343 (6%)
Strand=Plus/Plus
Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA--GGTGTATTCGGTGGTT 163075
||||||||||| ||||| || || | ||| | || | || ||||||||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135
| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 163136 AGCAAGAGTC-ACAGAACTACGGTTATAAGTTCGGACAAGAA----GAAGAGACTTACAA 163190
| | || || || | | ||||| | ||||| |||||| ||||||||||||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 163191 -----CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTC 163245
||||| ||||||||||| || || | || |||||| |||| ||||| ||||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 163246 AACAACTCACGTTCACTTC---ACTT--CTTCCTTGCTGCATTCCCTGTGGTCTGCATCT 163300
|||||||| || | ||||| || | ||| | || || | || || | | ||||
Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794
Query 163301 GGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAA 163343
|| |||| || | ||| | || ||||| |||||||| ||
Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq10
Length=33665772
Score = 132 bits (146), Expect = 5e-26
Identities = 232/335 (69%), Gaps = 21/335 (6%)
Strand=Plus/Plus
Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023
|||||| | || || ||||||||||| |||| |||| | || ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGT--CGCAGGTGTATTCGGTGGTTCACTCT 163081
||||| ||||| | || || ||| | || || | | ||||||||||| |
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG---------CC 4333011
Query 163082 TTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAG 163141
|||| ||||||| ||||| | || | |||| | | ||||| |||| ||||| | |
Sbjct 4333012 CTAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 163142 AGTCACAG--AACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC-TTACAA-----CAT 163193
| || | | | | || | ||||| |||| |||||||| |||||| |||
Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129
Query 163194 TGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTC 163253
||| | ||||||||| || || | || |||| || ||| ||||| ||||||||||||
Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189
Query 163254 ACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288
||| || |||||| | ||||| | ||||
Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq9
Length=34148863
Score = 120 bits (132), Expect = 3e-22
Identities = 153/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921
||||||||||||||||| ||||||||| || || || || | || || |||||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981
|||||| |||| ||| | |||||||| ||||||||| | |||||| | || || |||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 162982 GGTACTTTTAACTACATGT-TCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTT 163040
| | ||| |||| ||||| | || || | ||||| ||||||||||| ||||| | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 163041 CCATATGATTGGAGTCGCAGGTGTATTC 163068
|| ||| | || || | |||||||||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq4
Length=30051516
Score = 93.3 bits (102), Expect = 5e-14
Identities = 119/161 (74%), Gaps = 10/161 (6%)
Strand=Plus/Plus
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC--GCAGGTG 163381
|| ||||| |||||||| || |||||||| |||||||||||||| |||||| ||| |
Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG--G 1282828
Query 163382 GTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGT----ATGGAA 163437
|| || ||| ||| ||| |||||| | || | || |||||| ||||||
Sbjct 1282829 GTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAA 1282886
Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478
|| || || || ||||||||||| |||||||| | |||||
Sbjct 1282887 GTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455
|||||||| |||||| | ||| | || |||||||||||||| ||||| || ||||||
Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850
Query 163456 GCTCACAACTTCCCACTTGACCT 163478
|||||||||||||| || |||||
Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553034614467960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |