Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1063 145 8e-30 seq1382 136 4e-27 seq10 132 5e-26 seq9 120 3e-22 seq4 93.3 5e-14 seq1024 87.8 2e-12 >seq1063 Length=431445 Score = 145 bits (160), Expect = 8e-30 Identities = 237/336 (71%), Gaps = 23/336 (7%) Strand=Plus/Minus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||| |||| || ||||||||||| ||| |||| | || || | ||||| |||||| Sbjct 54219 ATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAACACAAC 54160 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA--GGTGTATTCGGTGGTTCACTCT 163081 ||||| ||||| | || || ||| | || || || ||||||||||| | Sbjct 54159 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG---------CC 54109 Query 163082 TTAGTGCTATGCACGGTTCTCTTGTTACT-TCTTCTCTTATCAGAGAAACTACTGAGCAA 163140 |||| ||||||| ||||| |||| | | |||| | | ||||| |||| ||||| | Sbjct 54108 CTAGTACTATGCATGGTTC-CTTGGTCCACTCTTGTTTCATCAGGGAAATCACTGAAAAC 54050 Query 163141 GAGTCACAG--AACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTT-ACAACA----- 163192 || || | | | | || | ||||| |||| |||||||||| |||| | Sbjct 54049 GAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGTA 53992 Query 163193 TTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACT 163252 |||| ||||||||||| || || | || ||||||||||| ||||| ||||||||||| Sbjct 53991 TTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAACAACT 53932 Query 163253 CACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288 | ||||| | || |||||| | ||||| | |||| Sbjct 53931 CTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq1382 Length=172696 Score = 136 bits (150), Expect = 4e-27 Identities = 240/343 (70%), Gaps = 19/343 (6%) Strand=Plus/Plus Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCA--GGTGTATTCGGTGGTT 163075 ||||||||||| ||||| || || | ||| | || | || ||||||||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | ||||| ||||| |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 163136 AGCAAGAGTC-ACAGAACTACGGTTATAAGTTCGGACAAGAA----GAAGAGACTTACAA 163190 | | || || || | | ||||| | ||||| |||||| |||||||||||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 163191 -----CATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTC 163245 ||||| ||||||||||| || || | || |||||| |||| ||||| |||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 163246 AACAACTCACGTTCACTTC---ACTT--CTTCCTTGCTGCATTCCCTGTGGTCTGCATCT 163300 |||||||| || | ||||| || | ||| | || || | || || | | |||| Sbjct 123736 AACAACTCTCGCT-ACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCT 123794 Query 163301 GGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAA 163343 || |||| || | ||| | || ||||| |||||||| || Sbjct 123795 GGGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq10 Length=33665772 Score = 132 bits (146), Expect = 5e-26 Identities = 232/335 (69%), Gaps = 21/335 (6%) Strand=Plus/Plus Query 162964 ATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAAC 163023 |||||| | || || ||||||||||| |||| |||| | || ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 163024 ATCCTAATGCACCCCTTCCATATGATTGGAGT--CGCAGGTGTATTCGGTGGTTCACTCT 163081 ||||| ||||| | || || ||| | || || | | ||||||||||| | Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG---------CC 4333011 Query 163082 TTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAG 163141 |||| ||||||| ||||| | || | |||| | | ||||| |||| ||||| | | Sbjct 4333012 CTAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 163142 AGTCACAG--AACTACGGTTATAAGTTCGGACAAGAAGAAGAGAC-TTACAA-----CAT 163193 | || | | | | || | ||||| |||| |||||||| |||||| ||| Sbjct 4333072 AATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCAT 4333129 Query 163194 TGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTC 163253 ||| | ||||||||| || || | || |||| || ||| ||||| |||||||||||| Sbjct 4333130 TGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAACTC 4333189 Query 163254 ACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288 ||| || |||||| | ||||| | |||| Sbjct 4333190 GACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq9 Length=34148863 Score = 120 bits (132), Expect = 3e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 ||||||||||||||||| ||||||||| || || || || | || || ||||| Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| |||| ||| | |||||||| ||||||||| | |||||| | || || ||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 162982 GGTACTTTTAACTACATGT-TCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTT 163040 | | ||| |||| ||||| | || || | ||||| ||||||||||| ||||| | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 163041 CCATATGATTGGAGTCGCAGGTGTATTC 163068 || ||| | || || | ||||||||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq4 Length=30051516 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/161 (74%), Gaps = 10/161 (6%) Strand=Plus/Plus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGAC--GCAGGTG 163381 || ||||| |||||||| || |||||||| |||||||||||||| |||||| ||| | Sbjct 1282771 ACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG--G 1282828 Query 163382 GTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGT----ATGGAA 163437 || || ||| ||| ||| |||||| | || | || |||||| |||||| Sbjct 1282829 GTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAA 1282886 Query 163438 GTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || || || || ||||||||||| |||||||| | ||||| Sbjct 1282887 GTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 163396 ACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAAT 163455 |||||||| |||||| | ||| | || |||||||||||||| ||||| || |||||| Sbjct 156791 ACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAAT 156850 Query 163456 GCTCACAACTTCCCACTTGACCT 163478 |||||||||||||| || ||||| Sbjct 156851 GCTCACAACTTCCCTCTAGACCT 156873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553034614467960