Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq9 125 8e-24
seq1382 118 1e-21
seq4 102 9e-17
seq1035 100 3e-16
seq11 93.3 5e-14
seq10 91.5 2e-13
seq1042 86.0 7e-12
>seq9
Length=34148863
Score = 125 bits (138), Expect = 8e-24
Identities = 154/208 (74%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 163255 GGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 163314
|||||||| || ||||| ||| ||||| || || ||||||||||| || | || ||
Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012
Query 163315 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCT 163374
||| || |||| ||| | |||||||| ||||||||| | ||||| | || || |||
Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072
Query 163375 GGCACATTCAACTACATG-CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 163433
||| ||||||| |||| |||| || | ||||| ||||||||||| ||||| | |
Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131
Query 163434 CCATATGTTGGGAGTCGCTGGTGTCTTC 163461
|| ||||| || || ||||||| |||
Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159
>seq1382
Length=172696
Score = 118 bits (130), Expect = 1e-21
Identities = 235/342 (69%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 163411 CACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT--GGTGTCTTCGGTGGAT 163468
||||||||||| ||||| || || | ||||| || | ||| ||||| ||||| || |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 163469 CACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTG 163528
| || ||| || |||||||| | || |||||| | || | || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 163529 AAACTGAGTCA-CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAG----AGACATACAA 163583
||| || || || | | ||||||| || ||||||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 163584 CA-----TCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163638
| | || || || ||||| || || | || |||||| |||||||||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 163639 AACAACAGCAG--AAGTCTTCACTTC--TTCCTGGCAGCATGGCCTGTCGTCGGAATCTG 163694
|||||| | | |||| || | ||| ||||||| ||||| || | || |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 163695 GTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAA 163736
| | || || | || | ||||||||||| |||||||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq4
Length=30051516
Score = 102 bits (112), Expect = 9e-17
Identities = 115/153 (75%), Gaps = 6/153 (4%)
Strand=Plus/Plus
Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773
||||||||||| |||||||| || |||||||| |||||||| ||| | |||| |||||
Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827
Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGT----ATGGA 163829
|||||||| | || || ||| || | | || || ||| ||| ||| |||||
Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885
Query 163830 AGTTATGCATGAGCGTAACGCACACAACTTCCC 163862
||| || ||||| ||||| || || ||||||||
Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCC 1282918
>seq1035
Length=594915
Score = 100 bits (110), Expect = 3e-16
Identities = 207/305 (68%), Gaps = 20/305 (7%)
Strand=Plus/Plus
Query 165081 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAAGGATTCCACAACTGG 165137
||||| || ||||| || ||| ||| |||| | |||| || | | | || |||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052
Query 165138 ACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCT 165197
|| | ||||| || |||||||||| ||| ||| | || || | || ||||||
Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGC 237111
Query 165198 GCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACC 165257
||||||||||| | || |||| || |||| ||| ||||| | ||||||||
Sbjct 237112 GCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167
Query 165258 T----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 165313
| || || ||| | | || || | |||||||||||||| ||||||||||| ||
Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227
Query 165314 CCGCTTCTGGTCGCAGATC-----TTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCAT 165368
||| || ||||| || ||| || || |||| ||||| || || || |||| | ||
Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGCCTTAT 237287
Query 165369 TTTTT 165373
||||
Sbjct 237288 GTTTT 237292
>seq11
Length=25514024
Score = 93.3 bits (102), Expect = 5e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122
|||||||| ||| |||| || |||||||| || | ||||| || ||||| |||
Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065
Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182
|| || ||| |||||||| | || || ||||| ||||||||||| ||| ||
Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005
Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242
||||| || ||| |||||| || || | | |||| || ||||| || ||||| |
Sbjct 15749004 TTCCTTGATGATTCACAGATTTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCCCATG 15748945
Query 164243 TCTGATTGTGT 164253
|| ||||||||
Sbjct 15748944 TCAGATTGTGT 15748934
>seq10
Length=33665772
Score = 91.5 bits (100), Expect = 2e-13
Identities = 225/336 (67%), Gaps = 23/336 (7%)
Strand=Plus/Plus
Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416
||||| | || || ||||| || ||||||| |||| |||| ||||| ||||| ||||||
Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960
Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGT--CGCTGGTGTCTTCGGTGGATCACTCT 163474
||||| ||||| | || || ||||| || || | ||||||| ||||| | ||
Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAG 4333015
Query 163475 TCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTG 163534
| | |||||||| | || | ||||| || || | || | ||||||| |
Sbjct 4333016 T----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071
Query 163535 AGT-CACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC------ATACAACATC 163587
| | | | | | || || || ||| |||| |||||||| ||| | |||
Sbjct 4333072 AATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCATT 4333130
Query 163588 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGC 163647
|| | || ||||| || || | || |||| || ||||||||| |||||||||
Sbjct 4333131 GTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAAC--T 4333188
Query 163648 AGAAGTCTT--CACTTCTTCCTGGCAGCATGGCCTG 163681
|| |||| || |||||| |||| || |||||||
Sbjct 4333189 CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1042
Length=564079
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392
|||||||| | | || || | ||||| | || |||||||| || ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT 163452
|||| ||||| || |||||||||||||| |||||||| || | ||||| || | |||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 163453 GG 163454
||
Sbjct 550740 GG 550739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563158495768920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |