Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq9 125 8e-24 seq1382 118 1e-21 seq4 102 9e-17 seq1035 100 3e-16 seq11 93.3 5e-14 seq10 91.5 2e-13 seq1042 86.0 7e-12 >seq9 Length=34148863 Score = 125 bits (138), Expect = 8e-24 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 163255 GGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 163314 |||||||| || ||||| ||| ||||| || || ||||||||||| || | || || Sbjct 1506953 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1507012 Query 163315 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCT 163374 ||| || |||| ||| | |||||||| ||||||||| | ||||| | || || ||| Sbjct 1507013 TTCTTGATCTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 1507072 Query 163375 GGCACATTCAACTACATG-CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 163433 ||| ||||||| |||| |||| || | ||||| ||||||||||| ||||| | | Sbjct 1507073 AGCA-TTTCAACTTCATGTATTGTATTTCTGGCAGAACACAACATCCTTATGCATCTGGT 1507131 Query 163434 CCATATGTTGGGAGTCGCTGGTGTCTTC 163461 || ||||| || || ||||||| ||| Sbjct 1507132 TCACATGTTAGGTGTAACTGGTGTATTC 1507159 >seq1382 Length=172696 Score = 118 bits (130), Expect = 1e-21 Identities = 235/342 (69%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 163411 CACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT--GGTGTCTTCGGTGGAT 163468 ||||||||||| ||||| || || | ||||| || | ||| ||||| ||||| || | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 163469 CACTCTTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTG 163528 | || ||| || |||||||| | || |||||| | || | || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 163529 AAACTGAGTCA-CAAAACTATGGTTACAAGTTTGGTCAAGAAGAAG----AGACATACAA 163583 ||| || || || | | ||||||| || ||||||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 163584 CA-----TCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 163638 | | || || || ||||| || || | || |||||| |||||||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 163639 AACAACAGCAG--AAGTCTTCACTTC--TTCCTGGCAGCATGGCCTGTCGTCGGAATCTG 163694 |||||| | | |||| || | ||| ||||||| ||||| || | || ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 163695 GTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAA 163736 | | || || | || | ||||||||||| ||||||||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq4 Length=30051516 Score = 102 bits (112), Expect = 9e-17 Identities = 115/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Plus Query 163714 AGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAG 163773 ||||||||||| |||||||| || |||||||| |||||||| ||| | |||| ||||| Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827 Query 163774 GGTCGTGTGCTCAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGT----ATGGA 163829 |||||||| | || || ||| || | | || || ||| ||| ||| ||||| Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885 Query 163830 AGTTATGCATGAGCGTAACGCACACAACTTCCC 163862 ||| || ||||| ||||| || || |||||||| Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCC 1282918 >seq1035 Length=594915 Score = 100 bits (110), Expect = 3e-16 Identities = 207/305 (68%), Gaps = 20/305 (7%) Strand=Plus/Plus Query 165081 TTTGGGGTGGCAGCAATCTTTAGAT---TCCTGTTGTTCCTTCAAGGATTCCACAACTGG 165137 ||||| || ||||| || ||| ||| |||| | |||| || | | | || ||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCC---AACGGTGGAATAATTGG 237052 Query 165138 ACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCT 165197 || | ||||| || |||||||||| ||| ||| | || || | || |||||| Sbjct 237053 ACGTTGAACCCTTTGAATATGATGGGAGTTT-AGGAGTATTAGGCGCTGCTCTGCTATGC 237111 Query 165198 GCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACC 165257 ||||||||||| | || |||| || |||| ||| ||||| | |||||||| Sbjct 237112 GCTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACA 237167 Query 165258 T----TTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAA 165313 | || || ||| | | || || | |||||||||||||| ||||||||||| || Sbjct 237168 TACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAA 237227 Query 165314 CCGCTTCTGGTCGCAGATC-----TTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCAT 165368 ||| || ||||| || ||| || || |||| ||||| || || || |||| | || Sbjct 237228 CCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGGCCTTAT 237287 Query 165369 TTTTT 165373 |||| Sbjct 237288 GTTTT 237292 >seq11 Length=25514024 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 |||||||| ||| |||| || |||||||| || | ||||| || ||||| ||| Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 || || ||| |||||||| | || || ||||| ||||||||||| ||| || Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 ||||| || ||| |||||| || || | | |||| || ||||| || ||||| | Sbjct 15749004 TTCCTTGATGATTCACAGATTTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCCCATG 15748945 Query 164243 TCTGATTGTGT 164253 || |||||||| Sbjct 15748944 TCAGATTGTGT 15748934 >seq10 Length=33665772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/336 (67%), Gaps = 23/336 (7%) Strand=Plus/Plus Query 163357 ATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAAC 163416 ||||| | || || ||||| || ||||||| |||| |||| ||||| ||||| |||||| Sbjct 4332901 ATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAACACAAC 4332960 Query 163417 ATCCTGATGCACCCCTTCCATATGTTGGGAGT--CGCTGGTGTCTTCGGTGGATCACTCT 163474 ||||| ||||| | || || ||||| || || | ||||||| ||||| | || Sbjct 4332961 ATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG-----CCCTAG 4333015 Query 163475 TCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTG 163534 | | |||||||| | || | ||||| || || | || | ||||||| | Sbjct 4333016 T----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTGAAAACG 4333071 Query 163535 AGT-CACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC------ATACAACATC 163587 | | | | | | || || || ||| |||| |||||||| ||| | ||| Sbjct 4333072 AATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAGAGCATT 4333130 Query 163588 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGC 163647 || | || ||||| || || | || |||| || ||||||||| ||||||||| Sbjct 4333131 GTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAACAAC--T 4333188 Query 163648 AGAAGTCTT--CACTTCTTCCTGGCAGCATGGCCTG 163681 || |||| || |||||| |||| || ||||||| Sbjct 4333189 CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1042 Length=564079 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 163333 GGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTACATG 163392 |||||||| | | || || | ||||| | || |||||||| || ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 163393 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCT 163452 |||| ||||| || |||||||||||||| |||||||| || | ||||| || | ||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 163453 GG 163454 || Sbjct 550740 GG 550739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563158495768920