Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq6 250 5e-61
seq9 228 2e-54
>seq6
Length=34899179
Score = 250 bits (276), Expect = 5e-61
Identities = 568/844 (67%), Gaps = 23/844 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || || || ||||| ||||||||||||||||||| || ||||||| |||
Sbjct 15337309 CTGGTAGTCGCCGACCCTCTTCTCGAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTC 15337250
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGT--GTCAGGCCCATCTGTTCCAGC 47956
||| || ||||||||||| | |||| | | || | || | | | | |||
Sbjct 15337249 CATCCAGTCGAAGGGGTTGGCCGCCCCGTACAACTTTTCGTAA--CCTAGCGCTCCAAGC 15337192
Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016
||| | || || ||| ||||||| || | ||||||| | ||||| || | |||
Sbjct 15337191 AGGCGGTCGGCCACGAACTCGATATACTGACTCATGAGGTCGCCATTCATCCCGACAAGG 15337132
Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076
| || |||| || || || || ||| ||| || | ||||| || | || ||
Sbjct 15337131 GCGACCGGCAGGGCATTGCAGACGAATTCCCGCTCGATGTCAACGGCATCGGCAACGATT 15337072
Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136
| || ||| |||| ||| | |||||||| || | || ||||| | ||||||
Sbjct 15337071 TCACGGACACGGTACTCGGAGAGCTTGTTGCGAAGAAGACTG---TAGAGGAGGCAGGCG 15337015
Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196
||||| | ||| | ||| ||||| ||| ||||||| |||| |||||| |||||| |||
Sbjct 15337014 AAGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGC 15336955
Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256
|||| || | || ||||||||||| || || ||| ||||| |||||||||| |||
Sbjct 15336954 ATGAGGCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCC 15336895
Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316
|| || ||||| || ||| | ||| |||| || | | | |||||||
Sbjct 15336894 TCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAATGA---GACAGAGGATTCGATCCAG 15336838
Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-- 48374
|||||||| || ||||| || || | || || ||||| ||||||
Sbjct 15336837 CGTAGCGCCCACTCGGCCTTGCGGGCGACAGGAGGGACGGTGTCAATGGCATGGAAGAGG 15336778
Query 48375 -GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433
| ||| ||| || | |||| | ||||| ||| || | |||||||||
Sbjct 15336777 CGAGACTT---CTCGCCGGGGTCCTTGATGTAGGTGTCGAGGAGGAGAGAATACATCTCA 15336721
Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493
||||| | ||||| |||||||||||||| ||||||||||| | ||||||| | |||
Sbjct 15336720 GAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCAGGAAGCTGG 15336661
Query 48494 ACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552
|| || | | | ||| | || ||| ||||| ||| || || || || || |||||
Sbjct 15336660 ACGTC-GCGCATGAACCGGGCCGCCAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCAAA 15336602
Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC-CT 48611
||||| |||||||| | ||| ||| |||||| | || ||| | ||| ||| |
Sbjct 15336601 AAAGGCGAGGACATGGGAGATGAAGTGGTGCTCGTCGGCGGACAGA-CGATCCTGCCAGT 15336543
Query 48612 G---TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668
| | || | | || |||||| || ||| | ||||||||||| || | || ||||
Sbjct 15336542 GGGAGAGATCCTGGGACAAGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCACGGCCTTTT 15336483
Query 48669 TGTA 48672
||||
Sbjct 15336482 TGTA 15336479
Score = 201 bits (222), Expect = 2e-46
Identities = 569/862 (66%), Gaps = 33/862 (4%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || || || ||||| |||||||| |||||||||| || ||||||| ||
Sbjct 4329027 CTGGTACTCACCGACCCTTTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGTTC 4328968
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACAC----CCGTGTCAGGCCCATCTGTTCCA 47954
||| || ||| ||||||| |||| |||| ||||| | | |
Sbjct 4328967 CATCCAGTCGAAAGGGTTGGAGACCCCGTACATTTTGCCGTA----GCCCAGCGCCCCGA 4328912
Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
||||| | || ||||| |||||||||| | ||||||| ||||| || | ||
Sbjct 4328911 GCAGGCGGTCGGCGACAAACTCGATGTACTGGCTCATGAGGACACCATTCATCCCGACGA 4328852
Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
| | ||||||| || | || |||||| ||| || | ||||| || | || |
Sbjct 4328851 GCGCGACGGGCAGGGCGTCGCAGACGAACTCCCGCTCGATGTCAACGGCGTCGGCAACGA 4328792
Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
| | || | ||| ||| | |||||||| ||| | | | || || | ||| |
Sbjct 4328791 TAGCCCGGACCTTGTCCTCGGAGAGCTTGTTGCGGAGGAG---GCCGTAAAGGAGGCAAG 4328735
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
||||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| |||||| |
Sbjct 4328734 CAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 4328675
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||||| || | || ||||||||||| || || ||| ||||| ||||| |||||||
Sbjct 4328674 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGC 4328615
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || ||||| ||| ||| | ||| |||| || || | || | ||||
Sbjct 4328614 CCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCG--GAAGACTCA-ATCC 4328558
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
| || ||||| || |||||| || | || | || || || || ||||||
Sbjct 4328557 ATTGGAGAGCCCATTCGGCCTTCCGGGCGACGGCAGGGACGGTGTCGATCGCGTGGAAGA 4328498
Query 48375 GCTTCTTGC---AC-TCAC--CTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428
| || || |||| | | |||| | || ||| ||| || | |||||
Sbjct 4328497 G------GCGAAACTTCACGTCGGGGTCCTTGATGTACGTATCGAGTAGAAGGGAGTACA 4328444
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || || |||||||| ||||||||||| | |||||| |
Sbjct 4328443 TCTCGGAGTGGATGTTCTCGATTGCAATCTGGAAACCGTAGAAGGCGCGGGCCTCGGGGA 4328384
Query 48489 CCTGCACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547
|| || || | | | ||| | | ||| ||||| ||| || || || || ||
Sbjct 4328383 GTTGGACGTC-GCGCATGAAGCGGGCGGCCAGGTTCTCGAGGACGATGCCGTCGGAGGCG 4328325
Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607
||||| ||||| ||||| || | ||| |||||||||| || || ||| || | | |
Sbjct 4328324 GCAAAAAAGGCGAGGACGTGGGAGACGAAGTGGCGCTCGTCGTCGGAGAG-GCGGTGCTG 4328266
Query 48608 CC-CTG---TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663
|| ||| | ||| ||||||||| || || | ||||||||||| || | ||
Sbjct 4328265 CCACTGGGAGAGGTCCGGCGACAGGTCCACCTCCTCTGCGGTCCAGAAGGAGGCCACCGC 4328206
Query 48664 TTTTTTGTACATGCCCCATATG 48685
|| ||||| | |||| |||
Sbjct 4328205 CTTCTTGTAGAACTCCCAGATG 4328184
>seq9
Length=34148863
Score = 228 bits (252), Expect = 2e-54
Identities = 573/857 (67%), Gaps = 23/857 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || ||||| || ||||| |||||||| | ||| |||| || ||||||| |||
Sbjct 33079852 CTGGTACTCGCCCACCCTCTTCTCGAAGAAGTTGGCCTTACCCTGCAGCGAGATGAGCTC 33079793
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCA-GGCCCATCTGTTCCAGCA 47957
||| || ||||||||||| | |||| | || | |||||| | | ||||
Sbjct 33079792 CATCCAGTCGAAGGGGTTGGCCGCCCGGTACATCT-TGCCGTGGCCCAGCGCCCCGAGCA 33079734
Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017
|| | || || ||| |||||||||| | |||||| | |||||| || | ||| |
Sbjct 33079733 GGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGACGAGAG 33079674
Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077
|| || | || | || |||||| ||| || | || || ||| | || || |
Sbjct 33079673 CGACAGGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAACGAT-T 33079615
Query 48078 GCTT--AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
|| | ||| ||| || | |||||||| ||| | || ||||| | ||||||
Sbjct 33079614 GCCCGGACCGCTTC-CTCGGACAGCTTGTTGCGGAGGAGGCTG---TAGAGGAGGCAGGC 33079559
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
||||| | ||| | ||| ||||| ||| |||||| ||||||||||| ||| || ||
Sbjct 33079558 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGG 33079499
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||||| || | | ||||||||||| || || ||| || || ||||||||||||||
Sbjct 33079498 CATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATGCC 33079439
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
||| || ||||| || ||| | ||| |||| || || || ||||||
Sbjct 33079438 CTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGAGGAATC---GATCCA 33079382
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374
| ||| |||||||| ||||| || | || | || || ||||| ||||||
Sbjct 33079381 GCGAAGGGCCCAGTCGGCCTTTCGGGCGACGGCGGGGACGGTATCGATGGCGTGGAAGAG 33079322
Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432
| | |||| || | | |||| || ||||| ||| || | |||||||||
Sbjct 33079321 GCGATACTTG---TCGTCGGGGTCCTTGACGTAGGTGTCGAGGAGGAGGGAGTACATCTC 33079265
Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492
||||| | ||||| || ||||||||||| ||||||||||| | |||||| | |||
Sbjct 33079264 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGGGAGCTG 33079205
Query 48493 CACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551
|| || | | | ||| | | | || ||||| |||| || ||||| || || || |
Sbjct 33079204 GACGTC-GCGCATGAAGCGCGCGGCGAGGTTCTCGATGACGATGCCATCGGAGGCGGCGA 33079146
Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA--GCATT-CCAGC 48608
||||||| ||||| || | || ||||||||| | |||||||| | || ||||
Sbjct 33079145 AGAAGGCGAGGACGTGGGAGACAAAGCGGCGCTCGTCGGGGGTGAGACGGTGTTGCCAGT 33079086
Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668
| ||| ||||||||| || ||| | |||||||| || || | || || |
Sbjct 33079085 GGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCCACCGCCTTCT 33079026
Query 48669 TGTACATGCCCCATATG 48685
|||| | |||| |||
Sbjct 33079025 TGTAGAACTCCCAGATG 33079009
Score = 217 bits (240), Expect = 3e-51
Identities = 568/859 (66%), Gaps = 27/859 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| || || || || || || |||||||| |||||||||| || ||||||| |||
Sbjct 1097281 CTGGTAATCTCCAACCCTCTTTTCGAAGAAGTTCGTCTTCCCCTGCAGCGAGATGAGCTC 1097222
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTCAGGCCCATCTGTTCCA 47954
||| || |||||||||| | ||| | |||| | ||| || |
Sbjct 1097221 CATCCAGTCGAAGGGGTTGACCACCCCAAACATCTTACCGTGAC----CCAGTGACTCAA 1097166
Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014
||||| | || || || |||| ||||| | ||| ||| | |||||| || | ||
Sbjct 1097165 GCAGGCGGTCGGCCACAAACTCTATGTACTGGCTCATAAGGTCGCCGTTCATCCCGACGA 1097106
Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074
||| ||||| | || | | ||||||| ||| || | || || || | || |
Sbjct 1097105 GGGCTACGGGAAGGGCGTCACAAACAAACTCCCGCTCGATGTCGACAGCGTCGGCAACGA 1097046
Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134
| | || ||| ||| || | |||||||| ||| | || ||||| | |||||
Sbjct 1097045 TGGCCCGGACACGGTCCTCCGACAGCTTGTTGCGGAGGAGGCTG---TAGAGGAGGCAGG 1096989
Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194
| ||||| | || | ||| ||||| ||| ||| ||| |||| |||||| ||| || |
Sbjct 1096988 CGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCG 1096929
Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254
|||||| || | || |||||||| || || || ||| ||||||||||||||||| |
Sbjct 1096928 GCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTC 1096869
Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314
|||| || ||||| ||| | | ||| | || || || || ||||
Sbjct 1096868 CCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTC---AATCC 1096812
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374
|| || |||||||| ||||| || | || | |||||| ||||| |||||||
Sbjct 1096811 AGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGA 1096752
Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431
| |||| ||| | | |||| | ||||| ||| || | ||||||||
Sbjct 1096751 GACGGGTCTT---CTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATCT 1096695
Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491
||||||| | ||||| || ||||||||||| ||||||||||| | ||||| | ||
Sbjct 1096694 CAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGCT 1096635
Query 48492 GCACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550
| || || | | | ||| | | || |||||| ||| || || ||||| || ||
Sbjct 1096634 GGACGTC-GCGCATGAACCGGGCGGCGAGGTTCTCAAGGACGATGCCGTCTGAGGCGGCG 1096576
Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC- 48609
||||||||||| || || | ||| |||||||||| ||||| ||| || | | |||
Sbjct 1096575 AAGAAGGCAAGAACGTGGGAGATGAAGTGGCGCTCGTCGTGGGAGAG-GCGATGCTGCCA 1096517
Query 48610 ---CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666
||||||| ||| ||||| || ||| | ||||||||||| || | || ||
Sbjct 1096516 ATGGGGTACGTCCGGAGACAGATCCACCTCCTCCGCCGTCCAGAAGGAGGCCACCGCCTT 1096457
Query 48667 TTTGTACATGCCCCATATG 48685
||||| | |||| |||
Sbjct 1096456 CTTGTAGAACTCCCAGATG 1096438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931448275042560
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