Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 250 5e-61 seq9 228 2e-54 >seq6 Length=34899179 Score = 250 bits (276), Expect = 5e-61 Identities = 568/844 (67%), Gaps = 23/844 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || || ||||| ||||||||||||||||||| || ||||||| ||| Sbjct 15337309 CTGGTAGTCGCCGACCCTCTTCTCGAAGAAGTTTGTCTTCCCCTGCAGCGAGATGAGCTC 15337250 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGT--GTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| | |||| | | || | || | | | | ||| Sbjct 15337249 CATCCAGTCGAAGGGGTTGGCCGCCCCGTACAACTTTTCGTAA--CCTAGCGCTCCAAGC 15337192 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || || ||| ||||||| || | ||||||| | ||||| || | ||| Sbjct 15337191 AGGCGGTCGGCCACGAACTCGATATACTGACTCATGAGGTCGCCATTCATCCCGACAAGG 15337132 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | || |||| || || || || ||| ||| || | ||||| || | || || Sbjct 15337131 GCGACCGGCAGGGCATTGCAGACGAATTCCCGCTCGATGTCAACGGCATCGGCAACGATT 15337072 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || ||| |||| ||| | |||||||| || | || ||||| | |||||| Sbjct 15337071 TCACGGACACGGTACTCGGAGAGCTTGTTGCGAAGAAGACTG---TAGAGGAGGCAGGCG 15337015 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| ||| ||||||| |||| |||||| |||||| ||| Sbjct 15337014 AAGTCGCAGTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAGAAGGTGAGACCCGGC 15336955 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| ||||| |||||||||| ||| Sbjct 15336954 ATGAGGCCTCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGACTCCC 15336895 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || ||||| || ||| | ||| |||| || | | | ||||||| Sbjct 15336894 TCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAATGA---GACAGAGGATTCGATCCAG 15336838 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-- 48374 |||||||| || ||||| || || | || || ||||| |||||| Sbjct 15336837 CGTAGCGCCCACTCGGCCTTGCGGGCGACAGGAGGGACGGTGTCAATGGCATGGAAGAGG 15336778 Query 48375 -GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | ||| ||| || | |||| | ||||| ||| || | ||||||||| Sbjct 15336777 CGAGACTT---CTCGCCGGGGTCCTTGATGTAGGTGTCGAGGAGGAGAGAATACATCTCA 15336721 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| |||||||||||||| ||||||||||| | ||||||| | ||| Sbjct 15336720 GAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCAGGAAGCTGG 15336661 Query 48494 ACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 || || | | | ||| | || ||| ||||| ||| || || || || || ||||| Sbjct 15336660 ACGTC-GCGCATGAACCGGGCCGCCAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCAAA 15336602 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC-CT 48611 ||||| |||||||| | ||| ||| |||||| | || ||| | ||| ||| | Sbjct 15336601 AAAGGCGAGGACATGGGAGATGAAGTGGTGCTCGTCGGCGGACAGA-CGATCCTGCCAGT 15336543 Query 48612 G---TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | || | | || |||||| || ||| | ||||||||||| || | || |||| Sbjct 15336542 GGGAGAGATCCTGGGACAAGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCACGGCCTTTT 15336483 Query 48669 TGTA 48672 |||| Sbjct 15336482 TGTA 15336479 Score = 201 bits (222), Expect = 2e-46 Identities = 569/862 (66%), Gaps = 33/862 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || || ||||| |||||||| |||||||||| || ||||||| || Sbjct 4329027 CTGGTACTCACCGACCCTTTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGTTC 4328968 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACAC----CCGTGTCAGGCCCATCTGTTCCA 47954 ||| || ||| ||||||| |||| |||| ||||| | | | Sbjct 4328967 CATCCAGTCGAAAGGGTTGGAGACCCCGTACATTTTGCCGTA----GCCCAGCGCCCCGA 4328912 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 ||||| | || ||||| |||||||||| | ||||||| ||||| || | || Sbjct 4328911 GCAGGCGGTCGGCGACAAACTCGATGTACTGGCTCATGAGGACACCATTCATCCCGACGA 4328852 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 | | ||||||| || | || |||||| ||| || | ||||| || | || | Sbjct 4328851 GCGCGACGGGCAGGGCGTCGCAGACGAACTCCCGCTCGATGTCAACGGCGTCGGCAACGA 4328792 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | || | ||| ||| | |||||||| ||| | | | || || | ||| | Sbjct 4328791 TAGCCCGGACCTTGTCCTCGGAGAGCTTGTTGCGGAGGAG---GCCGTAAAGGAGGCAAG 4328735 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||| | ||| ||||| ||| ||||||| ||||||||||| |||||| | Sbjct 4328734 CAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCGG 4328675 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || ||||||||||| || || ||| ||||| ||||| ||||||| Sbjct 4328674 GCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATGC 4328615 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || ||||| ||| ||| | ||| |||| || || | || | |||| Sbjct 4328614 CCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCG--GAAGACTCA-ATCC 4328558 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 | || ||||| || |||||| || | || | || || || || |||||| Sbjct 4328557 ATTGGAGAGCCCATTCGGCCTTCCGGGCGACGGCAGGGACGGTGTCGATCGCGTGGAAGA 4328498 Query 48375 GCTTCTTGC---AC-TCAC--CTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 | || || |||| | | |||| | || ||| ||| || | ||||| Sbjct 4328497 G------GCGAAACTTCACGTCGGGGTCCTTGATGTACGTATCGAGTAGAAGGGAGTACA 4328444 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || || |||||||| ||||||||||| | |||||| | Sbjct 4328443 TCTCGGAGTGGATGTTCTCGATTGCAATCTGGAAACCGTAGAAGGCGCGGGCCTCGGGGA 4328384 Query 48489 CCTGCACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 || || || | | | ||| | | ||| ||||| ||| || || || || || Sbjct 4328383 GTTGGACGTC-GCGCATGAAGCGGGCGGCCAGGTTCTCGAGGACGATGCCGTCGGAGGCG 4328325 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAG 48607 ||||| ||||| ||||| || | ||| |||||||||| || || ||| || | | | Sbjct 4328324 GCAAAAAAGGCGAGGACGTGGGAGACGAAGTGGCGCTCGTCGTCGGAGAG-GCGGTGCTG 4328266 Query 48608 CC-CTG---TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGC 48663 || ||| | ||| ||||||||| || || | ||||||||||| || | || Sbjct 4328265 CCACTGGGAGAGGTCCGGCGACAGGTCCACCTCCTCTGCGGTCCAGAAGGAGGCCACCGC 4328206 Query 48664 TTTTTTGTACATGCCCCATATG 48685 || ||||| | |||| ||| Sbjct 4328205 CTTCTTGTAGAACTCCCAGATG 4328184 >seq9 Length=34148863 Score = 228 bits (252), Expect = 2e-54 Identities = 573/857 (67%), Gaps = 23/857 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| || ||||| |||||||| | ||| |||| || ||||||| ||| Sbjct 33079852 CTGGTACTCGCCCACCCTCTTCTCGAAGAAGTTGGCCTTACCCTGCAGCGAGATGAGCTC 33079793 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCA-GGCCCATCTGTTCCAGCA 47957 ||| || ||||||||||| | |||| | || | |||||| | | |||| Sbjct 33079792 CATCCAGTCGAAGGGGTTGGCCGCCCGGTACATCT-TGCCGTGGCCCAGCGCCCCGAGCA 33079734 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || || ||| |||||||||| | |||||| | |||||| || | ||| | Sbjct 33079733 GGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGACGAGAG 33079674 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || || | || | || |||||| ||| || | || || ||| | || || | Sbjct 33079673 CGACAGGGAGTGCGTCGCAGACGAACTCCCGCTCGATGTCAACAGCGTCCGCAACGAT-T 33079615 Query 48078 GCTT--AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || | ||| ||| || | |||||||| ||| | || ||||| | |||||| Sbjct 33079614 GCCCGGACCGCTTC-CTCGGACAGCTTGTTGCGGAGGAGGCTG---TAGAGGAGGCAGGC 33079559 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| | ||| | ||| ||||| ||| |||||| ||||||||||| ||| || || Sbjct 33079558 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCGGG 33079499 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | | ||||||||||| || || ||| || || |||||||||||||| Sbjct 33079498 CATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAACCGGAGAAGAAGATGCC 33079439 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || ||||| || ||| | ||| |||| || || || |||||| Sbjct 33079438 CTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGAGGAATC---GATCCA 33079382 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | ||| |||||||| ||||| || | || | || || ||||| |||||| Sbjct 33079381 GCGAAGGGCCCAGTCGGCCTTTCGGGCGACGGCGGGGACGGTATCGATGGCGTGGAAGAG 33079322 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | |||| || | | |||| || ||||| ||| || | ||||||||| Sbjct 33079321 GCGATACTTG---TCGTCGGGGTCCTTGACGTAGGTGTCGAGGAGGAGGGAGTACATCTC 33079265 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||||| ||||||||||| | |||||| | ||| Sbjct 33079264 GGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGGGAGCTG 33079205 Query 48493 CACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 || || | | | ||| | | | || ||||| |||| || ||||| || || || | Sbjct 33079204 GACGTC-GCGCATGAAGCGCGCGGCGAGGTTCTCGATGACGATGCCATCGGAGGCGGCGA 33079146 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA--GCATT-CCAGC 48608 ||||||| ||||| || | || ||||||||| | |||||||| | || |||| Sbjct 33079145 AGAAGGCGAGGACGTGGGAGACAAAGCGGCGCTCGTCGGGGGTGAGACGGTGTTGCCAGT 33079086 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | ||| ||||||||| || ||| | |||||||| || || | || || | Sbjct 33079085 GGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCCAGAACGAGGCCACCGCCTTCT 33079026 Query 48669 TGTACATGCCCCATATG 48685 |||| | |||| ||| Sbjct 33079025 TGTAGAACTCCCAGATG 33079009 Score = 217 bits (240), Expect = 3e-51 Identities = 568/859 (66%), Gaps = 27/859 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || || || || |||||||| |||||||||| || ||||||| ||| Sbjct 1097281 CTGGTAATCTCCAACCCTCTTTTCGAAGAAGTTCGTCTTCCCCTGCAGCGAGATGAGCTC 1097222 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTCAGGCCCATCTGTTCCA 47954 ||| || |||||||||| | ||| | |||| | ||| || | Sbjct 1097221 CATCCAGTCGAAGGGGTTGACCACCCCAAACATCTTACCGTGAC----CCAGTGACTCAA 1097166 Query 47955 GCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGA 48014 ||||| | || || || |||| ||||| | ||| ||| | |||||| || | || Sbjct 1097165 GCAGGCGGTCGGCCACAAACTCTATGTACTGGCTCATAAGGTCGCCGTTCATCCCGACGA 1097106 Query 48015 GGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAA 48074 ||| ||||| | || | | ||||||| ||| || | || || || | || | Sbjct 1097105 GGGCTACGGGAAGGGCGTCACAAACAAACTCCCGCTCGATGTCGACAGCGTCGGCAACGA 1097046 Query 48075 TCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGG 48134 | | || ||| ||| || | |||||||| ||| | || ||||| | ||||| Sbjct 1097045 TGGCCCGGACACGGTCCTCCGACAGCTTGTTGCGGAGGAGGCTG---TAGAGGAGGCAGG 1096989 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 | ||||| | || | ||| ||||| ||| ||| ||| |||| |||||| ||| || | Sbjct 1096988 CGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCG 1096929 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||||| || | || |||||||| || || || ||| ||||||||||||||||| | Sbjct 1096928 GCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTC 1096869 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || ||||| ||| | | ||| | || || || || |||| Sbjct 1096868 CCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGAAGATTC---AATCC 1096812 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 || || |||||||| ||||| || | || | |||||| ||||| ||||||| Sbjct 1096811 AGCGCAGGGCCCAGTCGGCCTTTCGGGCGACAGAGGGGACCGTCTCGATGGCTCGGAAGA 1096752 Query 48375 ---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 | |||| ||| | | |||| | ||||| ||| || | |||||||| Sbjct 1096751 GACGGGTCTT---CTCGTCAGGGTCCTTGATGTAGGTGTCGAGGAGGAGGGAGTACATCT 1096695 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 ||||||| | ||||| || ||||||||||| ||||||||||| | ||||| | || Sbjct 1096694 CAGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGGGAGCT 1096635 Query 48492 GCACTTCTGTGGA-GAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 | || || | | | ||| | | || |||||| ||| || || ||||| || || Sbjct 1096634 GGACGTC-GCGCATGAACCGGGCGGCGAGGTTCTCAAGGACGATGCCGTCTGAGGCGGCG 1096576 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC- 48609 ||||||||||| || || | ||| |||||||||| ||||| ||| || | | ||| Sbjct 1096575 AAGAAGGCAAGAACGTGGGAGATGAAGTGGCGCTCGTCGTGGGAGAG-GCGATGCTGCCA 1096517 Query 48610 ---CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 ||||||| ||| ||||| || ||| | ||||||||||| || | || || Sbjct 1096516 ATGGGGTACGTCCGGAGACAGATCCACCTCCTCCGCCGTCCAGAAGGAGGCCACCGCCTT 1096457 Query 48667 TTTGTACATGCCCCATATG 48685 ||||| | |||| ||| Sbjct 1096456 CTTGTAGAACTCCCAGATG 1096438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931448275042560