Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 176 8e-39 seq6 168 1e-36 >seq9 Length=34148863 Score = 176 bits (194), Expect = 8e-39 Identities = 479/730 (66%), Gaps = 12/730 (2%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 |||| | || ||||| || ||||| ||||| || || | |||||| || || | | | Sbjct 33079131 ACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCT 33079190 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| | || || ||| | |||||| |||||||| |||||||| ||||||| Sbjct 33079191 TCATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 33079250 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774 | || | ||||| ||| |||| || || || || ||| | | ||| || || Sbjct 33079251 AGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACG 33079310 Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 | | |||| || || |||||||| | | ||| | || | ||||| | Sbjct 33079311 ACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACT 33079370 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||||| | |||||| | || | ||| | || | |||||| || || ||||| | Sbjct 33079371 GGGCCCTTCGCTGGATCGATT-CCTCCG-GCTCC-TTCGCCGAGCGCCTCGTTGCCTTCG 33079427 Query 25895 C-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952 | ||| || ||||||||||| ||| |||||| || ||| || ||||||||||||||| | Sbjct 33079428 CCTGC-GTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGC-GCTATCTTCTGGCTCAAG-A 33079484 Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 | | || | ||||||||| || ||| |||||||| |||||| | | |||||||| | Sbjct 33079485 AACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCC 33079544 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 ||||| | || || |||||||| ||||||| ||| | | | | |||| | || | | Sbjct 33079545 TCCACTGCGACTTCGCCTGCCTCCTCTACA---GCCTCCTCCGCAACAAGCTGTCCGAGG 33079601 Query 26072 AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131 | | ||| ||| | || ||||| || |||||| |||||| Sbjct 33079602 AAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACG 33079661 Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191 | || |||||| ||||||||||| ||||| |||| | Sbjct 33079662 CACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCG 33079721 Query 26192 TGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGT 26251 ||||||||| ||||| | |||||| | || || | ||| | || | ||||| | Sbjct 33079722 TGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCT 33079781 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| ||| ||| || | || ||| |||||||||| || |||||||| | Sbjct 33079782 TCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTGG 33079841 Query 26312 GCGACTATCA 26321 |||| || || Sbjct 33079842 GCGAGTACCA 33079851 >seq6 Length=34899179 Score = 168 bits (186), Expect = 1e-36 Identities = 553/853 (65%), Gaps = 19/853 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| ||| ||||||||| || ||| | || ||| Sbjct 4328185 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCAGAGGAGGTGGACCTG 4328244 Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 | |||| | | ||| | ||| || ||| | ||||||| || || || Sbjct 4328245 TCGCCGGACCTCTCCCAGTGGCAGCACCGC-CTCTCCGACGACGAGCGCCACTTCGTCTC 4328303 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 |||| | || || ||||| ||||| || || || || |||||| ||| || | Sbjct 4328304 CCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCG 4328363 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | || || || | |||||| ||||||||||||||||| || || Sbjct 4328364 CTTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAAT 4328423 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771 ||| || | ||||| ||| |||| || || || ||| |||||||| | ||| || Sbjct 4328424 CGAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGAT-ACGTACATCAAGGACCCCG 4328482 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCG 25830 || || ||| || || || ||||| ||| ||| || || ||||||| Sbjct 4328483 ACGTGAAGTTTCGCCTCTTCCACGCGATCGA-CACCGTCCCTGCCGTCGCCCGGAAGGCC 4328541 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||| | | ||||| | | | ||| | || | |||||| || || ||| Sbjct 4328542 GAATGGGCTCTCCAATGGATTGA--GTCTTCCGGCTCC-TTCGCCGAGCGACTCGTCGCC 4328598 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || ||||||||||||||| ||| || || ||| |||||||||||||||| Sbjct 4328599 TTCGCCTGC-GTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCA 4328656 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || || ||||||||| || ||| ||||||||||||||| | | ||||||| Sbjct 4328657 AGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 4328716 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068 | || ||| | || ||||| ||||| || ||| |||| | | | | |||| | || Sbjct 4328717 GCCTTCACTGCGACTTTGCTTGCCTCCTTTAC---GGCCTCCTCCGCAACAAGCTCTCCG 4328773 Query 26069 AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 | || | ||| |||| | || || || || |||||| |||||| Sbjct 4328774 AGGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATCGAGCGGGAGTTCGTCTGCG 4328833 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | || ||||| ||||||||||| ||||| |||| Sbjct 4328834 ACGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTCATGAGCCAGTACATCGAGT 4328893 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 ||| ||||||| ||||| | |||||| || || | | ||| | | |||| Sbjct 4328894 TTGTCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAAATGTACGGGGTCTCCAACC 4328953 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | ||||||| |||||| ||| ||| || | ||||||||||||||||| || || |||| Sbjct 4328954 CTTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGG 4329013 Query 26309 TCGGCGACTATCA 26321 |||| || || || Sbjct 4329014 TCGGTGAGTACCA 4329026 Score = 131 bits (144), Expect = 3e-25 Identities = 419/639 (66%), Gaps = 20/639 (3%) Strand=Plus/Plus Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749 |||||||| |||||||| || ||||| || | ||||||||| ||||| | || || Sbjct 15336683 TTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCTGAGATGTATTCTCTCCTCCTC 15336742 Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809 || ||||| | ||| || ||||| ||| || || |||||| || ||| Sbjct 15336743 GACACCTACATCAAGGACCCCGGCGAGAAGTCTCGCCTCTTCCATGCCATTGA-CACCGT 15336801 Query 25810 CCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868 ||| | || | ||||| |||||| | |||||| | | || | || | Sbjct 15336802 CCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACGCTGGATCGA-ATCCTCTGT-CT-C 15336858 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 || | |||||| || || ||||| || ||| || ||||| |||| ||| ||| || | Sbjct 15336859 ATTCGCCGAGCGCCTCGTTGCCTTCGCCTGC-GTCGAGGGAGTCTTCTTCTCCGGCTCCT 15336917 Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986 | |||| ||||||||||||||||| || || |||||| || || ||| || ||| Sbjct 15336918 TCTGCG-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976 Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046 ||||||||| | | |||||||| |||||| | || || |||||||| ||||||| | | Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACA--GTC 15337034 Query 26047 CACTTGCTCCACAAACCTTCTCAAGAG-ACCGTCTACAGT---ATCATCAAAGAGGCTGT 26102 ||| | | |||| | |||| ||| ||||| | | || ||| | || || || Sbjct 15337035 TTCTT-CGCAACAAGC--TCTC-CGAGTACCGTGT-CCGTGAAATCGTTGCCGATGCCGT 15337089 Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162 || |||||| ||| || | || ||||| Sbjct 15337090 TGACATCGAGCGGGAATTCGTCTGCAATGCCCTGCCGGTCGCCCTTGTCGGGATGAATGG 15337149 Query 26163 CAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACT 26222 | |||||||| || || || |||| |||||||||| ||||| | ||| || Sbjct 15337150 CGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGACCGCCTGCTTGGAGCGCTAGGTTA 15337209 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | | ||| | || | ||||| ||||||| ||||| ||| ||| || | || Sbjct 15337210 CGAAAAGTTGTACGGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGG 15337269 Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||| |||||||| || ||||||||||||||||| || Sbjct 15337270 GAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACTACCA 15337308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928760518944960