Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq9 176 8e-39
seq6 168 1e-36
>seq9
Length=34148863
Score = 176 bits (194), Expect = 8e-39
Identities = 479/730 (66%), Gaps = 12/730 (2%)
Strand=Plus/Plus
Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654
|||| | || ||||| || ||||| ||||| || || | |||||| || || | | |
Sbjct 33079131 ACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCATCGAGAACCTCGCCGCGCGCT 33079190
Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714
||| | || || ||| | |||||| |||||||| |||||||| |||||||
Sbjct 33079191 TCATGCGCGACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 33079250
Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCG 25774
| || | ||||| ||| |||| || || || || ||| | | ||| || ||
Sbjct 33079251 AGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACG 33079310
Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834
| | |||| || || |||||||| | | ||| | || | ||||| |
Sbjct 33079311 ACAAGTATCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACT 33079370
Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894
||||| | |||||| | || | ||| | || | |||||| || || ||||| |
Sbjct 33079371 GGGCCCTTCGCTGGATCGATT-CCTCCG-GCTCC-TTCGCCGAGCGCCTCGTTGCCTTCG 33079427
Query 25895 C-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCA 25952
| ||| || ||||||||||| ||| |||||| || ||| || ||||||||||||||| |
Sbjct 33079428 CCTGC-GTCGAGGGCATCTTCTTCTCCGGTTCCTTCTGC-GCTATCTTCTGGCTCAAG-A 33079484
Query 25953 GAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011
| | || | ||||||||| || ||| |||||||| |||||| | | |||||||| |
Sbjct 33079485 AACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCC 33079544
Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071
||||| | || || |||||||| ||||||| ||| | | | | |||| | || | |
Sbjct 33079545 TCCACTGCGACTTCGCCTGCCTCCTCTACA---GCCTCCTCCGCAACAAGCTGTCCGAGG 33079601
Query 26072 AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNN 26131
| | ||| ||| | || ||||| || |||||| ||||||
Sbjct 33079602 AAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGACATCGAGCGGGAGTTCGTCTGCGACG 33079661
Query 26132 NNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATG 26191
| || |||||| ||||||||||| ||||| |||| |
Sbjct 33079662 CACTCCCTGTCGCTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCG 33079721
Query 26192 TGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGT 26251
||||||||| ||||| | |||||| | || || | ||| | || | ||||| |
Sbjct 33079722 TGGCCGACCGCCTGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCT 33079781
Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311
|||||| ||||| ||| ||| || | || ||| |||||||||| || |||||||| |
Sbjct 33079782 TCGACTGGATGGAGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTGG 33079841
Query 26312 GCGACTATCA 26321
|||| || ||
Sbjct 33079842 GCGAGTACCA 33079851
>seq6
Length=34899179
Score = 168 bits (186), Expect = 1e-36
Identities = 553/853 (65%), Gaps = 19/853 (2%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||| | ||||||||||| ||| ||||||||| || ||| | || |||
Sbjct 4328185 ATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCTTCTGGACCGCAGAGGAGGTGGACCTG 4328244
Query 25537 GCCAAGGACATGGACGGCTGGTA----CGCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592
| |||| | | ||| | ||| || ||| | ||||||| || || ||
Sbjct 4328245 TCGCCGGACCTCTCCCAGTGGCAGCACCGC-CTCTCCGACGACGAGCGCCACTTCGTCTC 4328303
Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652
|||| | || || ||||| ||||| || || || || |||||| ||| || |
Sbjct 4328304 CCACGTCCTCGCCTTTTTTGCCGCCTCCGACGGCATCGTCCTCGAGAACCTGGCCGCCCG 4328363
Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712
|||| | || || || | |||||| ||||||||||||||||| || ||
Sbjct 4328364 CTTCATGCGCGACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGATTGCAAT 4328423
Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACAGACGTCG 25771
||| || | ||||| ||| |||| || || || ||| |||||||| | ||| ||
Sbjct 4328424 CGAGAACATCCACTCCGAGATGTACTCCCTTCTACTCGAT-ACGTACATCAAGGACCCCG 4328482
Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCG 25830
|| || ||| || || || ||||| ||| ||| || || |||||||
Sbjct 4328483 ACGTGAAGTTTCGCCTCTTCCACGCGATCGA-CACCGTCCCTGCCGTCGCCCGGAAGGCC 4328541
Query 25831 CGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890
||||| | | ||||| | | | ||| | || | |||||| || || |||
Sbjct 4328542 GAATGGGCTCTCCAATGGATTGA--GTCTTCCGGCTCC-TTCGCCGAGCGACTCGTCGCC 4328598
Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948
|| || ||| || ||||||||||||||| ||| || || ||| ||||||||||||||||
Sbjct 4328599 TTCGCCTGC-GTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGC-GCCATCTTCTGGCTCA 4328656
Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008
|| || || ||||||||| || ||| ||||||||||||||| | | |||||||
Sbjct 4328657 AGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGG 4328716
Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTC 26068
| || ||| | || ||||| ||||| || ||| |||| | | | | |||| | ||
Sbjct 4328717 GCCTTCACTGCGACTTTGCTTGCCTCCTTTAC---GGCCTCCTCCGCAACAAGCTCTCCG 4328773
Query 26069 AAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128
| || | ||| |||| | || || || || |||||| ||||||
Sbjct 4328774 AGGACAAGGTCCGGGCTATCGTTGCCGACGCCGTTGACATCGAGCGGGAGTTCGTCTGCG 4328833
Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188
| || ||||| ||||||||||| ||||| ||||
Sbjct 4328834 ACGCCCTGCCCGTCGCGCTCGTCGGGATGAATGGTGTCCTCATGAGCCAGTACATCGAGT 4328893
Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248
||| ||||||| ||||| | |||||| || || | | ||| | | ||||
Sbjct 4328894 TTGTCGCCGACCGCCTGCTCGGGGCGCTGGGCTACGGCAAAATGTACGGGGTCTCCAACC 4328953
Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308
| ||||||| |||||| ||| ||| || | ||||||||||||||||| || || ||||
Sbjct 4328954 CTTTCGACTGGATGGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGG 4329013
Query 26309 TCGGCGACTATCA 26321
|||| || || ||
Sbjct 4329014 TCGGTGAGTACCA 4329026
Score = 131 bits (144), Expect = 3e-25
Identities = 419/639 (66%), Gaps = 20/639 (3%)
Strand=Plus/Plus
Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTG 25749
|||||||| |||||||| || ||||| || | ||||||||| ||||| | || ||
Sbjct 15336683 TTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCTGAGATGTATTCTCTCCTCCTC 15336742
Query 25750 ATGACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATA 25809
|| ||||| | ||| || ||||| ||| || || |||||| || |||
Sbjct 15336743 GACACCTACATCAAGGACCCCGGCGAGAAGTCTCGCCTCTTCCATGCCATTGA-CACCGT 15336801
Query 25810 CCCAGCA-TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTAC 25868
||| | || | ||||| |||||| | |||||| | | || | || |
Sbjct 15336802 CCCTCCTGTCGCCCGCAAGGCCGAGTGGGCGCTACGCTGGATCGA-ATCCTCTGT-CT-C 15336858
Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927
|| | |||||| || || ||||| || ||| || ||||| |||| ||| ||| || |
Sbjct 15336859 ATTCGCCGAGCGCCTCGTTGCCTTCGCCTGC-GTCGAGGGAGTCTTCTTCTCCGGCTCCT 15336917
Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAAC 25986
| |||| ||||||||||||||||| || || |||||| || || ||| || |||
Sbjct 15336918 TCTGCG-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAAC 15336976
Query 25987 GAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGC 26046
||||||||| | | |||||||| |||||| | || || |||||||| ||||||| | |
Sbjct 15336977 GAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACA--GTC 15337034
Query 26047 CACTTGCTCCACAAACCTTCTCAAGAG-ACCGTCTACAGT---ATCATCAAAGAGGCTGT 26102
||| | | |||| | |||| ||| ||||| | | || ||| | || || ||
Sbjct 15337035 TTCTT-CGCAACAAGC--TCTC-CGAGTACCGTGT-CCGTGAAATCGTTGCCGATGCCGT 15337089
Query 26103 GGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAA 26162
|| |||||| ||| || | || |||||
Sbjct 15337090 TGACATCGAGCGGGAATTCGTCTGCAATGCCCTGCCGGTCGCCCTTGTCGGGATGAATGG 15337149
Query 26163 CAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACT 26222
| |||||||| || || || |||| |||||||||| ||||| | ||| ||
Sbjct 15337150 CGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGACCGCCTGCTTGGAGCGCTAGGTTA 15337209
Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282
|| | | ||| | || | ||||| ||||||| ||||| ||| ||| || | ||
Sbjct 15337210 CGAAAAGTTGTACGGGGCGGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGG 15337269
Query 26283 GAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321
|||||| |||||||| || ||||||||||||||||| ||
Sbjct 15337270 GAAGACAAACTTCTTCGAGAAGAGGGTCGGCGACTACCA 15337308
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928760518944960
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