Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_019516.1
Length=161440
Score E
Sequences producing significant alignments: (Bits) Value
seq9 159 4e-34
seq1382 136 4e-27
seq1063 131 2e-25
seq10 125 7e-24
seq1042 116 4e-21
seq1035 107 2e-18
seq3 86.0 6e-12
>seq9
Length=34148863
Score = 159 bits (176), Expect = 4e-34
Identities = 184/245 (75%), Gaps = 2/245 (1%)
Strand=Plus/Plus
Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633
||| || | || ||| | |||||| || | || || |||||||||||||| |||
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975
Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCA 8693
|||||| || ||||||||||| |||||| ||||||| ||| | |||| ||| |||||||
Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035
Query 8694 AGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATG-CTTG 8752
||| |||||||||||||||||| | || || || | | ||||||| ||| |||
Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094
Query 8753 TCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTG 8812
| || | ||| || ||||||||||| ||||| | | |||||| | ||||| ||||||
Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154
Query 8813 TCTTC 8817
| |||
Sbjct 1507155 TATTC 1507159
>seq1382
Length=172696
Score = 136 bits (150), Expect = 4e-27
Identities = 239/342 (70%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCT--GGTGTCTTCGGCGGAT 8824
||||||||||| ||||| || || ||||| | ||| | ||| ||||| |||||||| |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 8825 CTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCG 8884
| || || || ||||||||||| | || || ||| || | | || ||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 8885 AAACCGAGTCT-CAAAACTATGGCTACAAGTTCGGTCAAGAAG-AGGAA---ACTTACAA 8939
||| ||| ||| || | | || |||| ||||||||||||| ||||| ||||||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 8940 -----CATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTT 8994
||||| || |||||||| || || | || |||||| |||||||||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 8995 AACAATTCTAGAAGCTT----GCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTG 9050
||||| ||| | ||| ||| ||| | || || ||||| || | || |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 9051 GTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAA 9092
| | || || | || | ||||||||||||||||||||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq1063
Length=431445
Score = 131 bits (144), Expect = 2e-25
Identities = 392/597 (66%), Gaps = 56/597 (9%)
Strand=Plus/Minus
Query 8480 ACCCCATCTGGGAAGCC-GCTTC-TCT-TGATGAGTGGCTCTACAACGGTGGTCCT-TAC 8535
|||| ||| ||||||| ||| | ||| || ||||||| ||||||| || ||||| ||
Sbjct 54475 ACCCTATCCGGGAAGCAAGCTGCATCTGTGTTGAGTGGTTCTACAATGGCGGTCCCGTAG 54416
Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595
|||| | |||| ||||| ||||| || | ||| ||||||| ||| | |
Sbjct 54415 AAGCTAATTGTTTGACACTTATGACTTGGTGTAGCTTATTACATGGGTCCTGAGTTGCCG 54356
Query 8596 CTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCC 8655
|| || | || |||||||||||||| ||||||||| ||||| |||||
Sbjct 54355 TTTCAATA-----TAGGTATGCGTCCTTGGATTGCTGTTGCATATGATGCTC--GTTGCT 54303
Query 8656 GCTGCT-TCTGCTGTATT--CCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA---- 8708
|||| | | || || || | | || || || ||||||| | ||||||||
Sbjct 54302 ACTGCAGTTTTCTTGATCGACCCTATTGATTCTATTAGTCAAGGATGTTTCTCTGACGAT 54243
Query 8709 -------------------TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGC 8749
|||||||||| |||| || || ||||| ||| ||| |||
Sbjct 54242 ATGCCTTTAGGAATACAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGA 54183
Query 8750 TTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG--C 8807
|||| || | ||| || ||||||||||| ||||| | || |||||| | ||||| | |
Sbjct 54182 TTGTATTACTGGCAGAACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTC 54123
Query 8808 TGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCT 8867
|||||| ||||| | || | | ||||||||||| | || |||| |
Sbjct 54122 TGGTGTATTCGG-----CCCTAGT----ACTATGCATGGTTCCTTGGTCCACTCTTGTTT 54072
Query 8868 GGTTCGTGAGACCACCGAAACCGAGT-CTCAAAACTATGGCTACAAGTTCGGTCAAGAAG 8926
| | || | ||| |||| ||| | | | | | | || |||||| |||| |
Sbjct 54071 CATCAGGGAAATCACTGAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGG 54013
Query 8927 AGGAAAC-TTACAA-----CATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCC 8980
| || || |||||| ||||| || |||||||| || || | || ||||||||||
Sbjct 54012 AAGAGACTTTACAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCC 53953
Query 8981 AATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTG 9037
||||||| ||| ||||| ||| | || ||||||||| | |||||||||||||
Sbjct 53952 AATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 125 bits (138), Expect = 7e-24
Identities = 237/341 (70%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 8707 GATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAG 8766
|||||||||||| | || || || ||||| ||||||| ||| |||| |||||||| ||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG--CTGGTGTCTTCGGCGGAT 8824
||||||||||| ||||| | || |||||| | ||||| | ||||||| |||||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009
Query 8825 CTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCG 8884
| || | | ||||||||||| | || | |||| | | | || | ||| |
Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 8885 AAACCGAGT-CTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAAC-TTACAA--- 8939
||| ||| | | | | | | || |||||| |||| || || || ||||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124
Query 8940 --CATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAAC 8997
|||||| | |||||||| || || | || |||| || ||||||||| ||| |||
Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184
Query 8998 AATTCTAGAAGCTTG-CATTTCTTCCTCGCTGCGTGGCCTG 9037
|| || | |||| ||||||||| | |||||||||||||
Sbjct 4333185 AACTCGA-CTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq1042
Length=564079
Score = 116 bits (128), Expect = 4e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 8687 TTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATA 8746
|||||||||| | || ||||||||||||| || ||||| ||||| ||| ||| |
Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803
Query 8747 TGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG 8806
|| |||| ||||||||||||||||||||||| |||||||| || ||||| | ||| |||
Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTG 550743
Query 8807 CTGG 8810
||||
Sbjct 550742 CTGG 550739
>seq1035
Length=594915
Score = 107 bits (118), Expect = 2e-18
Identities = 236/349 (68%), Gaps = 30/349 (9%)
Strand=Plus/Plus
Query 10338 ATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGC 10397
||||||||||| | || || || |||||||||||||| || || | || | || |
Sbjct 237045 ATAATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTC 237103
Query 10398 TCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATC--AAGATGGCGAACA 10455
| |||| || || || || ||||| ||||||| ||||| ||||||| |
Sbjct 237104 TGCTATGCGCTATTCATGGT----CTGTATAAAACAC--TTTATTCGAAGATGGTAACGG 237157
Query 10456 AGCAAACACTTTCAAA----GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGG 10511
||||| || | | |||||| | ||||||| |||||||| ||||| ||||
Sbjct 237158 TGCAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGG 237217
Query 10512 TTACTGCTAACCGTTTCTGGTCCCAGAT-----ATTTGGAATTGCTTTTAGCAATAAACG 10566
| |||||||||||||| |||||||| || || || |||||||| |||||| ||
Sbjct 237218 TCACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCG 237277
Query 10567 CTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGG 10626
||| | ||||| | |||||| | || | ||| | |||| | |||||||
Sbjct 237278 TTGG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGG 237329
Query 10627 ---AATCA-TTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATC 10671
| | | | ||||| ||||| ||||| ||||| || || || || ||
Sbjct 237330 GGTAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378
>seq3
Length=30470407
Score = 86.0 bits (94), Expect = 6e-12
Identities = 161/225 (72%), Gaps = 10/225 (4%)
Strand=Plus/Minus
Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535
|| |||| ||||||||||| | ||| ||||| ||||| | ||||| |||||||||||
Sbjct 4244422 TTTTACCAAATCTGGGAAGCAACATCTATTGATAAGTGGTTGTACAATGGTGGTCCTTAT 4244363
Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595
|||| | || | || | | |||| || | || ||||||||||| | |||
Sbjct 4244362 GAGCTAATTGTACTGCA-TAAATACTTGCTGTAGCTCATTTCATGGGTCGTGATTAGGAG 4244304
Query 8596 CTT-TCTTACCGCCTTGG-CATGCGTCCTTGGATCTG-TGTTGCATACTCTGCTCCTGTT 8652
||| ||| | |||| || | |||||||| ||| ||||||||| || |||||| |
Sbjct 4244303 CTTAGCTTTC--ATTTGGATATTCATCCTTGGA-CTGCTGTTGCATATTCAGCTCCT-AT 4244248
Query 8653 GCCGCTGCTTCTGCTGTATTCCTTG-TCTATCCTTTTGGTCAAGG 8696
|| | |||| ||||||| || |||| |||| | | ||||||||
Sbjct 4244247 GCAGTTGCTACTGCTGT-TTGCTTGATCTAGCTTAAAGGTCAAGG 4244204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 516433135896000
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