Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq9 159 4e-34 seq1382 136 4e-27 seq1063 131 2e-25 seq10 125 7e-24 seq1042 116 4e-21 seq1035 107 2e-18 seq3 86.0 6e-12 >seq9 Length=34148863 Score = 159 bits (176), Expect = 4e-34 Identities = 184/245 (75%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||| || | || ||| | |||||| || | || || |||||||||||||| ||| Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCA 8693 |||||| || ||||||||||| |||||| ||||||| ||| | |||| ||| ||||||| Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035 Query 8694 AGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATG-CTTG 8752 ||| |||||||||||||||||| | || || || | | ||||||| ||| ||| Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094 Query 8753 TCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTG 8812 | || | ||| || ||||||||||| ||||| | | |||||| | ||||| |||||| Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154 Query 8813 TCTTC 8817 | ||| Sbjct 1507155 TATTC 1507159 >seq1382 Length=172696 Score = 136 bits (150), Expect = 4e-27 Identities = 239/342 (70%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCT--GGTGTCTTCGGCGGAT 8824 ||||||||||| ||||| || || ||||| | ||| | ||| ||||| |||||||| | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 8825 CTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCG 8884 | || || || ||||||||||| | || || ||| || | | || ||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 8885 AAACCGAGTCT-CAAAACTATGGCTACAAGTTCGGTCAAGAAG-AGGAA---ACTTACAA 8939 ||| ||| ||| || | | || |||| ||||||||||||| ||||| |||||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 8940 -----CATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTT 8994 ||||| || |||||||| || || | || |||||| |||||||||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 8995 AACAATTCTAGAAGCTT----GCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTG 9050 ||||| ||| | ||| ||| ||| | || || ||||| || | || ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 9051 GTTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAA 9092 | | || || | || | |||||||||||||||||||| Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq1063 Length=431445 Score = 131 bits (144), Expect = 2e-25 Identities = 392/597 (66%), Gaps = 56/597 (9%) Strand=Plus/Minus Query 8480 ACCCCATCTGGGAAGCC-GCTTC-TCT-TGATGAGTGGCTCTACAACGGTGGTCCT-TAC 8535 |||| ||| ||||||| ||| | ||| || ||||||| ||||||| || ||||| || Sbjct 54475 ACCCTATCCGGGAAGCAAGCTGCATCTGTGTTGAGTGGTTCTACAATGGCGGTCCCGTAG 54416 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595 |||| | |||| ||||| ||||| || | ||| ||||||| ||| | | Sbjct 54415 AAGCTAATTGTTTGACACTTATGACTTGGTGTAGCTTATTACATGGGTCCTGAGTTGCCG 54356 Query 8596 CTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCCTGTTGCC 8655 || || | || |||||||||||||| ||||||||| ||||| ||||| Sbjct 54355 TTTCAATA-----TAGGTATGCGTCCTTGGATTGCTGTTGCATATGATGCTC--GTTGCT 54303 Query 8656 GCTGCT-TCTGCTGTATT--CCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA---- 8708 |||| | | || || || | | || || || ||||||| | |||||||| Sbjct 54302 ACTGCAGTTTTCTTGATCGACCCTATTGATTCTATTAGTCAAGGATGTTTCTCTGACGAT 54243 Query 8709 -------------------TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGC 8749 |||||||||| |||| || || ||||| ||| ||| ||| Sbjct 54242 ATGCCTTTAGGAATACAGATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGA 54183 Query 8750 TTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG--C 8807 |||| || | ||| || ||||||||||| ||||| | || |||||| | ||||| | | Sbjct 54182 TTGTATTACTGGCAGAACACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTC 54123 Query 8808 TGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCT 8867 |||||| ||||| | || | | ||||||||||| | || |||| | Sbjct 54122 TGGTGTATTCGG-----CCCTAGT----ACTATGCATGGTTCCTTGGTCCACTCTTGTTT 54072 Query 8868 GGTTCGTGAGACCACCGAAACCGAGT-CTCAAAACTATGGCTACAAGTTCGGTCAAGAAG 8926 | | || | ||| |||| ||| | | | | | | || |||||| |||| | Sbjct 54071 CATCAGGGAAATCACTGAAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGG 54013 Query 8927 AGGAAAC-TTACAA-----CATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCC 8980 | || || |||||| ||||| || |||||||| || || | || |||||||||| Sbjct 54012 AAGAGACTTTACAATAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCC 53953 Query 8981 AATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTG 9037 ||||||| ||| ||||| ||| | || ||||||||| | ||||||||||||| Sbjct 53952 AATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 125 bits (138), Expect = 7e-24 Identities = 237/341 (70%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 8707 GATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAG 8766 |||||||||||| | || || || ||||| ||||||| ||| |||| |||||||| || Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG--CTGGTGTCTTCGGCGGAT 8824 ||||||||||| ||||| | || |||||| | ||||| | ||||||| ||||| Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGG----- 4333009 Query 8825 CTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCG 8884 | || | | ||||||||||| | || | |||| | | | || | ||| | Sbjct 4333010 CCCTAGT----ACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 8885 AAACCGAGT-CTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAAC-TTACAA--- 8939 ||| ||| | | | | | | || |||||| |||| || || || |||||| Sbjct 4333066 AAAACGAATCCGCGTTAGCA-AGTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124 Query 8940 --CATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAAC 8997 |||||| | |||||||| || || | || |||| || ||||||||| ||| ||| Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184 Query 8998 AATTCTAGAAGCTTG-CATTTCTTCCTCGCTGCGTGGCCTG 9037 || || | |||| ||||||||| | ||||||||||||| Sbjct 4333185 AACTCGA-CTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq1042 Length=564079 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 8687 TTGGTCAAGGTTCGTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATA 8746 |||||||||| | || ||||||||||||| || ||||| ||||| ||| ||| | Sbjct 550862 TTGGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCA 550803 Query 8747 TGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG 8806 || |||| ||||||||||||||||||||||| |||||||| || ||||| | ||| ||| Sbjct 550802 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTG 550743 Query 8807 CTGG 8810 |||| Sbjct 550742 CTGG 550739 >seq1035 Length=594915 Score = 107 bits (118), Expect = 2e-18 Identities = 236/349 (68%), Gaps = 30/349 (9%) Strand=Plus/Plus Query 10338 ATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGC 10397 ||||||||||| | || || || |||||||||||||| || || | || | || | Sbjct 237045 ATAATTGGACGTTGAACCCTTTGAATATGATGGGAGTTTA-GGAGTATTAGGCGCTGCTC 237103 Query 10398 TCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATC--AAGATGGCGAACA 10455 | |||| || || || || ||||| ||||||| ||||| ||||||| | Sbjct 237104 TGCTATGCGCTATTCATGGT----CTGTATAAAACAC--TTTATTCGAAGATGGTAACGG 237157 Query 10456 AGCAAACACTTTCAAA----GCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGG 10511 ||||| || | | |||||| | ||||||| |||||||| ||||| |||| Sbjct 237158 TGCAAATACATACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGG 237217 Query 10512 TTACTGCTAACCGTTTCTGGTCCCAGAT-----ATTTGGAATTGCTTTTAGCAATAAACG 10566 | |||||||||||||| |||||||| || || || |||||||| |||||| || Sbjct 237218 TCACTGCTAACCGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCG 237277 Query 10567 CTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGG 10626 ||| | ||||| | |||||| | || | ||| | |||| | ||||||| Sbjct 237278 TTGG--------CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGG 237329 Query 10627 ---AATCA-TTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATC 10671 | | | | ||||| ||||| ||||| ||||| || || || || || Sbjct 237330 GGTAGTAAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378 >seq3 Length=30470407 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/225 (72%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 8476 TTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTAC 8535 || |||| ||||||||||| | ||| ||||| ||||| | ||||| ||||||||||| Sbjct 4244422 TTTTACCAAATCTGGGAAGCAACATCTATTGATAAGTGGTTGTACAATGGTGGTCCTTAT 4244363 Query 8536 CAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGGGAA 8595 |||| | || | || | | |||| || | || ||||||||||| | ||| Sbjct 4244362 GAGCTAATTGTACTGCA-TAAATACTTGCTGTAGCTCATTTCATGGGTCGTGATTAGGAG 4244304 Query 8596 CTT-TCTTACCGCCTTGG-CATGCGTCCTTGGATCTG-TGTTGCATACTCTGCTCCTGTT 8652 ||| ||| | |||| || | |||||||| ||| ||||||||| || |||||| | Sbjct 4244303 CTTAGCTTTC--ATTTGGATATTCATCCTTGGA-CTGCTGTTGCATATTCAGCTCCT-AT 4244248 Query 8653 GCCGCTGCTTCTGCTGTATTCCTTG-TCTATCCTTTTGGTCAAGG 8696 || | |||| ||||||| || |||| |||| | | |||||||| Sbjct 4244247 GCAGTTGCTACTGCTGT-TTGCTTGATCTAGCTTAAAGGTCAAGG 4244204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516433135896000