Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020486.1
Length=171211
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 159 4e-34
seq9 145 8e-30
seq1063 125 8e-24
seq10 120 3e-22
seq4 118 1e-21
seq1024 89.7 6e-13
seq1042 87.8 2e-12
seq11 82.4 8e-11
seq6 82.4 8e-11
>seq1382
Length=172696
Score = 159 bits (176), Expect = 4e-34
Identities = 244/342 (71%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 161452
|||||||| || ||||| || || | ||| | || |||| ||||| || ||||| |
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 161453 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 161512
| || |||||||| ||||| ||||| |||| |||||| || | | |||||||| |
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 161513 AAAACGAGTCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACAA 161567
||||||| || || | | ||||||| |||||||||||||||| |||| |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 161568 CA-----TCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTC 161622
| | || ||||| || || || || | || |||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 161623 AACAACTCCCGCTCG--CTGCACTTC--TTCCTTGCTGCTTGGCCTGTTGTTGGCATCTG 161678
|||||||| |||| || || | ||| | || |||||||| ||| |||| |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 161679 GTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAA 161720
| |||| || | || | ||||||||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 145 bits (160), Expect = 8e-30
Identities = 180/244 (74%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261
|||||| | || ||||| |||||| || | |||||| ||||||||||||||| ||
Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975
Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321
||||| || |||||||| || || || | ||| || ||| || |||| ||| | |||||
Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035
Query 161322 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATG-CTTG 161380
||| ||||||||||| |||||| | || || ||| | | ||||||| |||| |||
Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094
Query 161381 TCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTG 161440
| || | ||||| |||||||| || ||||| | | || ||| | || ||| | ||||
Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154
Query 161441 TGTT 161444
| ||
Sbjct 1507155 TATT 1507158
>seq1063
Length=431445
Score = 125 bits (138), Expect = 8e-24
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Minus
Query 161335 GATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAG 161394
|||| |||||| | || || |||||||| ||| ||| |||| |||| || | |||||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 161452
|||||||| || ||||| | || || ||| | || ||||| ||||| || ||| |
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT- 54107
Query 161453 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 161512
||| | ||||| ||||| |||| ||||| | | | |||| ||| |
Sbjct 54106 --------AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 161513 AAAACGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAACA 161569
||||||| ||| | | | | || || |||||| |||| |||||||| | |||| |
Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997
Query 161570 -----TCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 161624
| || ||||| || || || || | || |||| |||||||| ||| |||||
Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937
Query 161625 CAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTG 161665
|||||| || || | || |||||| | ||||| |||||||
Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 120 bits (132), Expect = 3e-22
Identities = 233/341 (68%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 161335 GATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAG 161394
|||| |||||| | || || |||||||| ||||||| |||| |||| ||||| |||||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 161452
|||||||| || ||||| | || || ||| | || ||||| ||||| || ||| |
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT- 4333013
Query 161453 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 161512
||| | ||||| ||||| |||| | ||||| | | | |||| ||| |
Sbjct 4333014 --------AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 161513 AAAACGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAA-- 161567
||||||| ||| | | | | || || |||||| |||| |||||||| | ||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123
Query 161568 ---CATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 161624
||| || | ||| || || || || | || ||| | |||||| ||| |||||
Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183
Query 161625 CAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTG 161665
|||||| || || |||||| | ||||| |||||||
Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq4
Length=30051516
Score = 118 bits (130), Expect = 1e-21
Identities = 124/162 (77%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG 161757
||||||||||| |||||||| ||||||||||| |||||||| || | ||||| ||||||
Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827
Query 161758 GGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG----GCATGGA 161813
||| || || || || ||| || | |||| |||||| ||||| | |||||
Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885
Query 161814 AGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCT 161855
||| || || || || |||||||| ||||||||| | |||||
Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1024
Length=717246
Score = 89.7 bits (98), Expect = 6e-13
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 161767 ATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAG 161826
|| ||||| ||||| || | ||||||||||| ||||| |||||||| ||||| ||
Sbjct 156785 ATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAA 156844
Query 161827 CGCAATGCTCACAACTTCCCTCTTGACCT 161855
|| |||||||||||||||||||| |||||
Sbjct 156845 CGTAATGCTCACAACTTCCCTCTAGACCT 156873
>seq1042
Length=564079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 161317 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATG 161376
|||||||| | | || |||| ||||||| || ||||||||||| ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 161377 CTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTT 161417
|||| ||||| || ||||||||||| || |||||||| ||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760
>seq11
Length=25514024
Score = 82.4 bits (90), Expect = 8e-11
Identities = 160/233 (69%), Gaps = 10/233 (4%)
Strand=Plus/Minus
Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400
||||| || ||| |||||||| || || || || || ||||| |||||||| ||
Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065
Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460
|| ||||| ||||| || | | || ||||| | || || || || |||
Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005
Query 158461 TTCCTGGACGATGACCAAATCGATTCT---GGTTTCATTCTGACTTGTGTTTCTTATCCT 158517
||||| || ||| || || ||| |||| ||| |||||||||||| | |||||
Sbjct 15749004 TTCCTTGATGATTCACAGAT---TTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCC- 15748949
Query 158518 ACAAGT--GATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGATGG 158568
|| || |||||||| ||| |||| |||||||| || ||||| ||||||
Sbjct 15748948 -CATGTCAGATTGTGTCATTCAGACACACAAGGAAAGTGATCTGTACTGATGG 15748897
>seq6
Length=34899179
Score = 82.4 bits (90), Expect = 8e-11
Identities = 101/136 (74%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 162334 ATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAAC 162393
||||| | |||| |||||||||||||| | ||||| || || | || |||||||
Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG---GTGCCAAT 26461217
Query 162394 TTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGC 162453
| || || || ||||||||||| || ||||| || || || ||||| ||||| || |||
Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158
Query 162454 TTCGCCAGTTTGAACT 162469
| || || || ||||
Sbjct 26461157 TACGTCAATTCTAACT 26461142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547697498788440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |