Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1382 159 4e-34 seq9 145 8e-30 seq1063 125 8e-24 seq10 120 3e-22 seq4 118 1e-21 seq1024 89.7 6e-13 seq1042 87.8 2e-12 seq11 82.4 8e-11 seq6 82.4 8e-11 >seq1382 Length=172696 Score = 159 bits (176), Expect = 4e-34 Identities = 244/342 (71%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 161452 |||||||| || ||||| || || | ||| | || |||| ||||| || ||||| | Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 161453 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 161512 | || |||||||| ||||| ||||| |||| |||||| || | | |||||||| | Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 161513 AAAACGAGTCC-CAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG----AGACCTACAA 161567 ||||||| || || | | ||||||| |||||||||||||||| |||| ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 161568 CA-----TCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTC 161622 | | || ||||| || || || || | || |||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 161623 AACAACTCCCGCTCG--CTGCACTTC--TTCCTTGCTGCTTGGCCTGTTGTTGGCATCTG 161678 |||||||| |||| || || | ||| | || |||||||| ||| |||| ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 161679 GTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAA 161720 | |||| || | || | ||||||||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 145 bits (160), Expect = 8e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 161202 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGT 161261 |||||| | || ||||| |||||| || | |||||| ||||||||||||||| || Sbjct 1506916 TTACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGT 1506975 Query 161262 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 161321 ||||| || |||||||| || || || | ||| || ||| || |||| ||| | ||||| Sbjct 1506976 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCA 1507035 Query 161322 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATG-CTTG 161380 ||| ||||||||||| |||||| | || || ||| | | ||||||| |||| ||| Sbjct 1507036 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTG 1507094 Query 161381 TCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTG 161440 | || | ||||| |||||||| || ||||| | | || ||| | || ||| | |||| Sbjct 1507095 TATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTG 1507154 Query 161441 TGTT 161444 | || Sbjct 1507155 TATT 1507158 >seq1063 Length=431445 Score = 125 bits (138), Expect = 8e-24 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Minus Query 161335 GATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAG 161394 |||| |||||| | || || |||||||| ||| ||| |||| |||| || | ||||| Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 161452 |||||||| || ||||| | || || ||| | || ||||| ||||| || ||| | Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT- 54107 Query 161453 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 161512 ||| | ||||| ||||| |||| ||||| | | | |||| ||| | Sbjct 54106 --------AGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 161513 AAAACGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAACA 161569 ||||||| ||| | | | | || || |||||| |||| |||||||| | |||| | Sbjct 54054 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 53997 Query 161570 -----TCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 161624 | || ||||| || || || || | || |||| |||||||| ||| ||||| Sbjct 53996 GAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAA 53937 Query 161625 CAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTG 161665 |||||| || || | || |||||| | ||||| ||||||| Sbjct 53936 CAACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 120 bits (132), Expect = 3e-22 Identities = 233/341 (68%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 161335 GATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAG 161394 |||| |||||| | || || |||||||| ||||||| |||| |||| ||||| ||||| Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 161395 CACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCA--GGTGTGTTTGGCGGTT 161452 |||||||| || ||||| | || || ||| | || ||||| ||||| || ||| | Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCCT- 4333013 Query 161453 CTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCG 161512 ||| | ||||| ||||| |||| | ||||| | | | |||| ||| | Sbjct 4333014 --------AGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 161513 AAAACGAGTCCCAG--AACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT-ACAA-- 161567 ||||||| ||| | | | | || || |||||| |||| |||||||| | |||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAA--GTGACTGATTCGGTAAAGAGGAAGAGACTTTACAATA 4333123 Query 161568 ---CATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAA 161624 ||| || | ||| || || || || | || ||| | |||||| ||| ||||| Sbjct 4333124 GAGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAA 4333183 Query 161625 CAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTG 161665 |||||| || || |||||| | ||||| ||||||| Sbjct 4333184 CAACTCGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq4 Length=30051516 Score = 118 bits (130), Expect = 1e-21 Identities = 124/162 (77%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 161698 AGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAG 161757 ||||||||||| |||||||| ||||||||||| |||||||| || | ||||| |||||| Sbjct 1282768 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAG 1282827 Query 161758 GGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTG----GCATGGA 161813 ||| || || || || ||| || | |||| |||||| ||||| | ||||| Sbjct 1282828 GGTCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGA 1282885 Query 161814 AGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCT 161855 ||| || || || || |||||||| ||||||||| | ||||| Sbjct 1282886 AGTAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1024 Length=717246 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 161767 ATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAG 161826 || ||||| ||||| || | ||||||||||| ||||| |||||||| ||||| || Sbjct 156785 ATTAACACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAA 156844 Query 161827 CGCAATGCTCACAACTTCCCTCTTGACCT 161855 || |||||||||||||||||||| ||||| Sbjct 156845 CGTAATGCTCACAACTTCCCTCTAGACCT 156873 >seq1042 Length=564079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 161317 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATG 161376 |||||||| | | || |||| ||||||| || ||||||||||| ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 161377 CTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTT 161417 |||| ||||| || ||||||||||| || |||||||| || Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATT 550760 >seq11 Length=25514024 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 ||||| || ||| |||||||| || || || || || ||||| |||||||| || Sbjct 15749124 TACATTCTGGACTCAGCTGAGACGGCAGGAGTGGAGCTGCCGTACTCATGCCGTGCCGGT 15749065 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || ||||| ||||| || | | || ||||| | || || || || ||| Sbjct 15749064 GCGTGTTCCAGCTGTGCAGGCCAGATGGTGTCTGGTGCTGTTGATCAGTCAGATGGATCC 15749005 Query 158461 TTCCTGGACGATGACCAAATCGATTCT---GGTTTCATTCTGACTTGTGTTTCTTATCCT 158517 ||||| || ||| || || ||| |||| ||| |||||||||||| | ||||| Sbjct 15749004 TTCCTTGATGATTCACAGAT---TTCAAAGGGTTACATGCTGACTTGTGTTGCCTATCC- 15748949 Query 158518 ACAAGT--GATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGATGG 158568 || || |||||||| ||| |||| |||||||| || ||||| |||||| Sbjct 15748948 -CATGTCAGATTGTGTCATTCAGACACACAAGGAAAGTGATCTGTACTGATGG 15748897 >seq6 Length=34899179 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 162334 ATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAAC 162393 ||||| | |||| |||||||||||||| | ||||| || || | || ||||||| Sbjct 26461273 ATTCTTTGTTGCTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCG---GTGCCAAT 26461217 Query 162394 TTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGC 162453 | || || || ||||||||||| || ||||| || || || ||||| ||||| || ||| Sbjct 26461216 TAGGCGGTCTGTGGACTTTTGTTGCTCTCCATGGTGCTTTCGCACTAATAGGCTT-ATGT 26461158 Query 162454 TTCGCCAGTTTGAACT 162469 | || || || |||| Sbjct 26461157 TACGTCAATTCTAACT 26461142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547697498788440