Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq9 143 8e-30 seq1382 96.9 1e-15 seq10 96.9 1e-15 seq1042 95.1 4e-15 seq1063 93.3 1e-14 >seq9 Length=34148863 Score = 143 bits (158), Expect = 8e-30 Identities = 175/231 (76%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || | ||||| | ||| || | | ||||||||||||| |||||||| || | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 18308 GAATACGA-ACATGAAATTGAAAGTACCGCTA---ATACCAAGAGGCATACCATCAGAGA 18363 ||||| | ||||||| |||||| |||| || || | ||||||||||||||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAAT----GCTAGATATTCCTAAAGGCATACCATCAGAGA 1507044 Query 18364 AACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGC 18421 |||| ||||| |||| ||| || | | ||||| || | || | |||||||| || || || Sbjct 1507043 AACTTCCTTGACCAATAGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGC 1506986 Query 18422 GGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTC 18472 ||||| |||||| |||||| || |||||||| || |||||||||| Sbjct 1506985 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTC 1506935 >seq1382 Length=172696 Score = 96.9 bits (106), Expect = 1e-15 Identities = 236/347 (68%), Gaps = 23/347 (7%) Strand=Plus/Minus Query 17973 TTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGC 18032 ||||| || |||||||| ||| || || | || || | ||| || | | | || ||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 18033 CAAGCAGCCAAGAAGAAATGTAGACTCCT-GCTA---TTGTTAAAGCTAGCATACTGGAA 18088 ||||| |||||||| |||| | | || | ||||| || |||||||| |||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 18089 GATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA-----TTATACGTCTCTTC---- 18139 ||| | || | || || |||||||| || |||||| || || |||||||| Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTG-AGACTCAAGCTCAGTCGTTTCTCTAAT-- 18196 |||||| || ||| | || || | | || ||| || ||||| ||||| || || Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 18197 AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC 18255 || | |||| || |||| || ||||||||| ||||| | || |||||||| | Sbjct 123598 AACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAATACAC 123542 Query 18256 CTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 18300 | | | | ||| | ||| | || |||||||||||||| ||||||| Sbjct 123541 CAGAGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495 >seq10 Length=33665772 Score = 96.9 bits (106), Expect = 1e-15 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 18246 CCGAATACCCCTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303 |||||||| || | | ||||| | ||| || || ||||||||||||| |||||||| | Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950 Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATC 18358 | |||||||| | |||||| ||||||||||| || || | |||||||||||| Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1042 Length=564079 Score = 95.1 bits (104), Expect = 4e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 ||| |||| ||| | ||| | || || ||||||||||| ||||| || || |||||||| Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | |||||| | ||||||||| || || ||||||||||||| || | ||| ||||| Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857 Query 18374 TCCAA 18378 |||| Sbjct 550858 ACCAA 550862 >seq1063 Length=431445 Score = 93.3 bits (102), Expect = 1e-14 Identities = 228/340 (67%), Gaps = 23/340 (7%) Strand=Plus/Plus Query 18030 GGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAG 18089 ||||| ||||||||||||||||||| | | ||||| || |||||||| |||||| Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957 Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC------GTCTCTTCTTCT 18143 || | || | || || |||||||| || |||||| | || |||||||| ||| Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017 Query 18144 TGGCCAAATTTATATCCATAGTT--CTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTG 18201 | || ||| | | | | | | || || ||||| |||| || || | Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075 Query 18202 AGGAA-GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG-- 18258 | || | | |||| || ||||||| | || || ||||||| || | Sbjct 54076 AAGAGTGGACCAAGGAA-CCATGCATAGTAC----TAGGGC-----CGAATACACCAGAG 54125 Query 18259 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACA 18318 | ||||| | ||| || || ||||||||||||| |||||||| || | ||||| | || Sbjct 54126 CTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCA 54185 Query 18319 TGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATC 18358 |||| | ||||||||| || |||| |||||||||||| Sbjct 54186 TGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151305356259346