Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq9 143 8e-30
seq1382 96.9 1e-15
seq10 96.9 1e-15
seq1042 95.1 4e-15
seq1063 93.3 1e-14
>seq9
Length=34148863
Score = 143 bits (158), Expect = 8e-30
Identities = 175/231 (76%), Gaps = 12/231 (5%)
Strand=Plus/Minus
Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307
|||||| || | ||||| | ||| || | | ||||||||||||| |||||||| || |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 18308 GAATACGA-ACATGAAATTGAAAGTACCGCTA---ATACCAAGAGGCATACCATCAGAGA 18363
||||| | ||||||| |||||| |||| || || | |||||||||||||||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAAT----GCTAGATATTCCTAAAGGCATACCATCAGAGA 1507044
Query 18364 AACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGC 18421
|||| ||||| |||| ||| || | | ||||| || | || | |||||||| || || ||
Sbjct 1507043 AACTTCCTTGACCAATAGGGTAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGC 1506986
Query 18422 GGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTC 18472
||||| |||||| |||||| || |||||||| || ||||||||||
Sbjct 1506985 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGATAGAAACTAAGTTC 1506935
>seq1382
Length=172696
Score = 96.9 bits (106), Expect = 1e-15
Identities = 236/347 (68%), Gaps = 23/347 (7%)
Strand=Plus/Minus
Query 17973 TTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACGGGC 18032
||||| || |||||||| ||| || || | || || | ||| || | | | || |||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 18033 CAAGCAGCCAAGAAGAAATGTAGACTCCT-GCTA---TTGTTAAAGCTAGCATACTGGAA 18088
||||| |||||||| |||| | | || | ||||| || |||||||| ||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 18089 GATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATA-----TTATACGTCTCTTC---- 18139
||| | || | || || |||||||| || |||||| || || ||||||||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 18140 TTCTTGGCCAAATTTATATCCATAGTTCTG-AGACTCAAGCTCAGTCGTTTCTCTAAT-- 18196
|||||| || ||| | || || | | || ||| || ||||| ||||| || ||
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 18197 AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC 18255
|| | |||| || |||| || ||||||||| ||||| | || |||||||| |
Sbjct 123598 AACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAATACAC 123542
Query 18256 CTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTT 18300
| | | | ||| | ||| | || |||||||||||||| |||||||
Sbjct 123541 CAGAGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495
>seq10
Length=33665772
Score = 96.9 bits (106), Expect = 1e-15
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 18246 CCGAATACCCCTG--CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGG 18303
|||||||| || | | ||||| | ||| || || ||||||||||||| |||||||| |
Sbjct 4333009 CCGAATACACCAGAGCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTG 4332950
Query 18304 CTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATC 18358
| |||||||| | |||||| ||||||||||| || || | ||||||||||||
Sbjct 4332949 CCTGGAATACAATCATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
>seq1042
Length=564079
Score = 95.1 bits (104), Expect = 4e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313
||| |||| ||| | ||| | || || ||||||||||| ||||| || || ||||||||
Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797
Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373
| |||||| | ||||||||| || || ||||||||||||| || | ||| |||||
Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857
Query 18374 TCCAA 18378
||||
Sbjct 550858 ACCAA 550862
>seq1063
Length=431445
Score = 93.3 bits (102), Expect = 1e-14
Identities = 228/340 (67%), Gaps = 23/340 (7%)
Strand=Plus/Plus
Query 18030 GGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAG 18089
||||| ||||||||||||||||||| | | ||||| || |||||||| ||||||
Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957
Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC------GTCTCTTCTTCT 18143
|| | || | || || |||||||| || |||||| | || |||||||| |||
Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017
Query 18144 TGGCCAAATTTATATCCATAGTT--CTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTG 18201
| || ||| | | | | | | || || ||||| |||| || || |
Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075
Query 18202 AGGAA-GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTG-- 18258
| || | | |||| || ||||||| | || || ||||||| || |
Sbjct 54076 AAGAGTGGACCAAGGAA-CCATGCATAGTAC----TAGGGC-----CGAATACACCAGAG 54125
Query 18259 CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACA 18318
| ||||| | ||| || || ||||||||||||| |||||||| || | ||||| | ||
Sbjct 54126 CTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCA 54185
Query 18319 TGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATC 18358
|||| | ||||||||| || |||| ||||||||||||
Sbjct 54186 TGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151305356259346
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |