Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020837.1
Length=198013
Score E
Sequences producing significant alignments: (Bits) Value
seq9 123 3e-23
seq1382 120 4e-22
seq4 113 6e-20
seq1035 111 2e-19
seq6 91.5 2e-13
seq11 82.4 1e-10
>seq9
Length=34148863
Score = 123 bits (136), Expect = 3e-23
Identities = 156/212 (74%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 103588 GAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTG 103647
||| || |||| || || | |||||| | | ||||| || ||||| ||||| || |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 103648 GAAGACCAG-CATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACG 103706
|| || | |||| ||||||| | | || || || ||||||||| |||| |||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041
Query 103707 AACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGT 103766
|||||||||| ||||||| |||||| || || | ||||| ||||||||||| || |
Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981
Query 103767 ATGCGACACAGATCCAGGGGCGCATGCCCAGA 103798
|||| ||| ||||| || ||||| ||||||
Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGA 1506949
>seq1382
Length=172696
Score = 120 bits (132), Expect = 4e-22
Identities = 181/251 (72%), Gaps = 15/251 (6%)
Strand=Plus/Minus
Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462
||||||||||| || ||||||| |||||| || | || ||||||||||| |||||
Sbjct 123743 GAGTTGTTGAAACTAGCATATTGGAGGATCAATCGGCTTAAATAACCATGAGCAGCTACA 123684
Query 103463 ATG-----TTGTATGTCTCTTCCT----CTTGTCCGAACTTGTAACCATAGTTTTG-AGA 103512
|| ||||| |||||||||| |||| ||||| ||||||| | | || |||
Sbjct 123683 ATACTCTATTGTAAGTCTCTTCCTTCTTCTTGACCGAATCTGTAACC-TGCTAATGCAGA 123625
Query 103513 TTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCAC 103571
||| ||||||| || || | || | | | || || |||| ||||| ||||||||||
Sbjct 123624 TTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAG-GAACCATGCATAGCAC 123566
Query 103572 TGAACAGTGAACCACCGAAGACTCC--AGCAACGCCCAGCATGTGGAAGGGGTGCATGAG 103629
|||| || || || ||||| || || ||| | || | ||||| || || ||||| ||
Sbjct 123565 TGAATAGGGAGCCGCCGAATACACCAGAGCTAGACCTAACATGTTCAATGGATGCATAAG 123506
Query 103630 AATGTTATGTT 103640
||||| ||||
Sbjct 123505 GATGTTGTGTT 123495
>seq4
Length=30051516
Score = 113 bits (124), Expect = 6e-20
Identities = 127/169 (75%), Gaps = 6/169 (4%)
Strand=Plus/Minus
Query 103178 AGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCAT----ACCCAGACC 103233
||||| | |||||||| ||||| ||||| || || || |||||||| ||| |||
Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868
Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293
||| || |||| | || ||| || || | ||||||||||||| |||| | |||
Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACGGA 1282810
Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCA 103342
|||||||| ||||| || || |||||||| ||||||||||||| ||||
Sbjct 1282809 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCA 1282761
>seq1035
Length=594915
Score = 111 bits (122), Expect = 2e-19
Identities = 265/398 (67%), Gaps = 26/398 (7%)
Strand=Plus/Minus
Query 101864 GGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAA--TAATACCG--ATGGAA 101919
|||| || |||||||| ||||| || || ||||| ||||| | || |||| || | |
Sbjct 237380 GGGAAACGAAGTCATAGGCACGTAGATTCAGAGCCAGACCGACTTACTACCCCAATAGCA 237321
Query 101920 CTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTA 101979
|| |||| | ||| | || | ||||| | ||||| | ||| | |||||
Sbjct 237320 CTCATCCATAAACCTGTTACGGATACAAAAAACATAAGG--------CCAACGGTTATTG 237269
Query 101980 CTAAATGCAATACCAAA-----GATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAAT 102034
||| |||| || || |||||| ||||| |||||||| || || ||||||||||
Sbjct 237268 GAAAAAGCAACCCCTAAAGATGGATTTGGGACCAAAAACGGTTAGCAGTGACCATTGAAT 237209
Query 102035 AAGTCTCTTCCTCTTGTGTGG----AATCGAATGCTTTGAAAGTGTTTGCTTGATCACCA 102090
|||||||||| |||| || | || | | | | | || ||||| | ||||
Sbjct 237208 AAGTCTCTTCGGCTTGAGTTGGGTTAAAAGCACGAACAGTATGTATTTGCACCGTTACCA 237149
Query 102091 TCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCC 102150
||||| | | |||||| | |||| ||| || || || | ||||| || | ||
Sbjct 237148 TCTTCGAATAAAGTGTTTTATACAG----ACCATGAATAGCGCATAGCAGAGCAGCGCCT 237093
Query 102151 AGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGT 102210
| | ||| ||| |||||||||| || ||||| | |||||| |||| | | ||
Sbjct 237092 AATACTCCT-AAACTCCCATCATATTCAAAGGGTTCAACGTCCAATTATTCCACCGTTGG 237034
Query 102211 AGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248
| |||| | ||| |||||| ||||| ||||||||
Sbjct 237033 AATCAGAGGATTCATCGAAATATAGCTGCTACACCAAA 236996
>seq6
Length=34899179
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/131 (76%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 102375 GAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCA 102434
||||||||| | ||| || || || || || || ||||| |||||||| ||||||| |||
Sbjct 26461147 GAATTGACGTAACAT-AAGCCTATTAGTGCGAAAGCACCATGGAGAGCAACAAAAGTCCA 26461205
Query 102435 GAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAG 102494
|| || || | |||| |||| ||||||||||| |||||||||||||| |||||
Sbjct 26461206 CAGACCGCCTAATTGG---CACCGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAG 26461262
Query 102495 AAGAAGAGAAT 102505
| | |||||
Sbjct 26461263 CAACAAAGAAT 26461273
>seq11
Length=25514024
Score = 82.4 bits (90), Expect = 1e-10
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 102869 TCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAA 102928
||||| || |||||| |||| ||||| |||| ||| || | |||| || |||||
Sbjct 15748994 TCATCAAGGAAGGATCCATCTGACTGATCAACAGCACCAGACACCATCTGGCCTGCACAG 15749053
Query 102929 GTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCG 102988
| ||||||||||| ||||| || || || ||||| || || ||||| ||||| | |
Sbjct 15749054 CTGGAACACGCACCGGCACGGCATGAGTACGGCAGCTCCACTCCTGCCGTCTCAGCTGAG 15749113
Query 102989 TCTAGAATATATTGATCATC 103008
|| ||||| || ||||||
Sbjct 15749114 TCCAGAATGTAGGCATCATC 15749133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633456116559720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |