Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq9 123 3e-23 seq1382 120 4e-22 seq4 113 6e-20 seq1035 111 2e-19 seq6 91.5 2e-13 seq11 82.4 1e-10 >seq9 Length=34148863 Score = 123 bits (136), Expect = 3e-23 Identities = 156/212 (74%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 103588 GAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTG 103647 ||| || |||| || || | |||||| | | ||||| || ||||| ||||| || | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 103648 GAAGACCAG-CATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACG 103706 || || | |||| ||||||| | | || || || ||||||||| |||| ||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 103707 AACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGT 103766 |||||||||| ||||||| |||||| || || | ||||| ||||||||||| || | Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981 Query 103767 ATGCGACACAGATCCAGGGGCGCATGCCCAGA 103798 |||| ||| ||||| || ||||| |||||| Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACCCAGA 1506949 >seq1382 Length=172696 Score = 120 bits (132), Expect = 4e-22 Identities = 181/251 (72%), Gaps = 15/251 (6%) Strand=Plus/Minus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 ||||||||||| || ||||||| |||||| || | || ||||||||||| ||||| Sbjct 123743 GAGTTGTTGAAACTAGCATATTGGAGGATCAATCGGCTTAAATAACCATGAGCAGCTACA 123684 Query 103463 ATG-----TTGTATGTCTCTTCCT----CTTGTCCGAACTTGTAACCATAGTTTTG-AGA 103512 || ||||| |||||||||| |||| ||||| ||||||| | | || ||| Sbjct 123683 ATACTCTATTGTAAGTCTCTTCCTTCTTCTTGACCGAATCTGTAACC-TGCTAATGCAGA 123625 Query 103513 TTCAGTTTCAGTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCAC 103571 ||| ||||||| || || | || | | | || || |||| ||||| |||||||||| Sbjct 123624 TTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAGGTTACCAAG-GAACCATGCATAGCAC 123566 Query 103572 TGAACAGTGAACCACCGAAGACTCC--AGCAACGCCCAGCATGTGGAAGGGGTGCATGAG 103629 |||| || || || ||||| || || ||| | || | ||||| || || ||||| || Sbjct 123565 TGAATAGGGAGCCGCCGAATACACCAGAGCTAGACCTAACATGTTCAATGGATGCATAAG 123506 Query 103630 AATGTTATGTT 103640 ||||| |||| Sbjct 123505 GATGTTGTGTT 123495 >seq4 Length=30051516 Score = 113 bits (124), Expect = 6e-20 Identities = 127/169 (75%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 103178 AGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCAT----ACCCAGACC 103233 ||||| | |||||||| ||||| ||||| || || || |||||||| ||| ||| Sbjct 1282927 AGGTCTAAAGGGAAGTTATGAGCATTACGTTCATGTATTACTTCCATCCATACCAAGATG 1282868 Query 103234 AGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGATGGA 103293 ||| || |||| | || ||| || || | ||||||||||||| |||| | ||| Sbjct 1282867 AGCACGATTGATGATATCAACCC--GTATTAATGACACGACCCTGACTGTCAACTACGGA 1282810 Query 103294 CTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCA 103342 |||||||| ||||| || || |||||||| ||||||||||||| |||| Sbjct 1282809 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATGGTGCTAATACCA 1282761 >seq1035 Length=594915 Score = 111 bits (122), Expect = 2e-19 Identities = 265/398 (67%), Gaps = 26/398 (7%) Strand=Plus/Minus Query 101864 GGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAA--TAATACCG--ATGGAA 101919 |||| || |||||||| ||||| || || ||||| ||||| | || |||| || | | Sbjct 237380 GGGAAACGAAGTCATAGGCACGTAGATTCAGAGCCAGACCGACTTACTACCCCAATAGCA 237321 Query 101920 CTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTA 101979 || |||| | ||| | || | ||||| | ||||| | ||| | ||||| Sbjct 237320 CTCATCCATAAACCTGTTACGGATACAAAAAACATAAGG--------CCAACGGTTATTG 237269 Query 101980 CTAAATGCAATACCAAA-----GATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAAT 102034 ||| |||| || || |||||| ||||| |||||||| || || |||||||||| Sbjct 237268 GAAAAAGCAACCCCTAAAGATGGATTTGGGACCAAAAACGGTTAGCAGTGACCATTGAAT 237209 Query 102035 AAGTCTCTTCCTCTTGTGTGG----AATCGAATGCTTTGAAAGTGTTTGCTTGATCACCA 102090 |||||||||| |||| || | || | | | | | || ||||| | |||| Sbjct 237208 AAGTCTCTTCGGCTTGAGTTGGGTTAAAAGCACGAACAGTATGTATTTGCACCGTTACCA 237149 Query 102091 TCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGTGCTCCTCCC 102150 ||||| | | |||||| | |||| ||| || || || | ||||| || | || Sbjct 237148 TCTTCGAATAAAGTGTTTTATACAG----ACCATGAATAGCGCATAGCAGAGCAGCGCCT 237093 Query 102151 AGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGT 102210 | | ||| ||| |||||||||| || ||||| | |||||| |||| | | || Sbjct 237092 AATACTCCT-AAACTCCCATCATATTCAAAGGGTTCAACGTCCAATTATTCCACCGTTGG 237034 Query 102211 AGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 | |||| | ||| |||||| ||||| |||||||| Sbjct 237033 AATCAGAGGATTCATCGAAATATAGCTGCTACACCAAA 236996 >seq6 Length=34899179 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 102375 GAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCA 102434 ||||||||| | ||| || || || || || || ||||| |||||||| ||||||| ||| Sbjct 26461147 GAATTGACGTAACAT-AAGCCTATTAGTGCGAAAGCACCATGGAGAGCAACAAAAGTCCA 26461205 Query 102435 GAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAG 102494 || || || | |||| |||| ||||||||||| |||||||||||||| ||||| Sbjct 26461206 CAGACCGCCTAATTGG---CACCGAGTAAAATCTCCTTGTGCTTCAGGACCCCATAGTAG 26461262 Query 102495 AAGAAGAGAAT 102505 | | ||||| Sbjct 26461263 CAACAAAGAAT 26461273 >seq11 Length=25514024 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 102869 TCATCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAA 102928 ||||| || |||||| |||| ||||| |||| ||| || | |||| || ||||| Sbjct 15748994 TCATCAAGGAAGGATCCATCTGACTGATCAACAGCACCAGACACCATCTGGCCTGCACAG 15749053 Query 102929 GTAGAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCG 102988 | ||||||||||| ||||| || || || ||||| || || ||||| ||||| | | Sbjct 15749054 CTGGAACACGCACCGGCACGGCATGAGTACGGCAGCTCCACTCCTGCCGTCTCAGCTGAG 15749113 Query 102989 TCTAGAATATATTGATCATC 103008 || ||||| || |||||| Sbjct 15749114 TCCAGAATGTAGGCATCATC 15749133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633456116559720