Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1063 129 2e-25 seq1382 100 8e-17 seq1042 80.6 8e-11 seq1024 80.6 8e-11 >seq1063 Length=431445 Score = 129 bits (142), Expect = 2e-25 Identities = 235/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 21664 CAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGA 21723 ||||||| ||||| | |||||||| | | ||| || || || || ||||||||||||| Sbjct 53896 CAGGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 53955 Query 21724 AGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA-----TATTGT-AAGTCTCTTCCT 21777 |||| | || | ||||| || |||||||| |||| |||||| |||||||||||| Sbjct 53956 AGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCT 54015 Query 21778 CTTGACCAAACTTGTAACCATAGTT--CTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835 ||| ||| || || || | | | | || | | |||||| | || | |||| Sbjct 54016 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 54073 Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCC--G 21893 | || ||||| | ||| ||||||| ||| || ||||| || Sbjct 54074 ACAAGAGTGGACCAAGGAACCATGCATAG---------TACTAGGGCCGAATACACCAGA 54124 Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953 || ||||| | ||||||||| |||||||||| || ||||| || ||| | || || | | Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184 Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATC 21994 ||| ||| ||| || || ||||| || || |||||| |||| Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 >seq1382 Length=172696 Score = 100 bits (110), Expect = 8e-17 Identities = 229/337 (68%), Gaps = 17/337 (5%) Strand=Plus/Minus Query 21614 GTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGC 21673 ||||||||||||||| | || | || | | ||| ||||| | ||| ||||| || Sbjct 123832 GTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGCCAAGC 123773 Query 21674 AGCAAGAAAGAAATG--AAGAC-TA-CGGGAATTATTAAAGCTAGCATATTGGAAGATAA 21729 || | || ||| |||| || || || || || || ||||||||||||| ||| | Sbjct 123772 TGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAGGATCA 123713 Query 21730 GCCGACCAAAATAGCCGTGAGCAGCAACAA-----TATTGTAAGTCTCTTCC----TCTT 21780 || | ||||| || |||||||| |||| ||||||||||||||||| |||| Sbjct 123712 ATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTCTTCTT 123653 Query 21781 GACCAAACTTGTAACCATAGTTCTG-TGAAACCTCTTCAGTCGTCTCACGAATGAGTGAC 21839 |||| || ||||||| | | || || | | |||||| || || | || | Sbjct 123652 GACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTA 123594 Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCC--GGCCA 21897 || || |||| | ||| ||||||||| ||| | || || ||||| || || | Sbjct 123593 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGAGCTA 123534 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTG 21934 ||| | ||||| || ||||||||||| || ||||| Sbjct 123533 GACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497 >seq1042 Length=564079 Score = 80.6 bits (88), Expect = 8e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || | ||| | ||||| ||| || |||||||| || ||||||||||||||||| || Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 | |||| ||| ||| || || || || || |||||| |||| |||| Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAA 550847 >seq1024 Length=717246 Score = 80.6 bits (88), Expect = 8e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533 ||||| || ||||||||||| || || || |||||||| || || | |||||||| ||| Sbjct 156873 AGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCA 156814 Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGAT 21562 ||||| | || |||||||| ||||| || Sbjct 156813 CGGTTGATGATATCAGCCCAAGTGTTAAT 156785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146195396779020