Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq1063 129 2e-25
seq1382 100 8e-17
seq1042 80.6 8e-11
seq1024 80.6 8e-11
>seq1063
Length=431445
Score = 129 bits (142), Expect = 2e-25
Identities = 235/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 21664 CAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGA 21723
||||||| ||||| | |||||||| | | ||| || || || || |||||||||||||
Sbjct 53896 CAGGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGA 53955
Query 21724 AGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA-----TATTGT-AAGTCTCTTCCT 21777
|||| | || | ||||| || |||||||| |||| |||||| ||||||||||||
Sbjct 53956 AGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCT 54015
Query 21778 CTTGACCAAACTTGTAACCATAGTT--CTGTGAAACCTCTTCAGTCGTCTCACGAATGAG 21835
||| ||| || || || | | | | || | | |||||| | || | ||||
Sbjct 54016 CTTTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAA 54073
Query 21836 TGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCC--G 21893
| || ||||| | ||| ||||||| ||| || ||||| ||
Sbjct 54074 ACAAGAGTGGACCAAGGAACCATGCATAG---------TACTAGGGCCGAATACACCAGA 54124
Query 21894 GCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGC 21953
|| ||||| | ||||||||| |||||||||| || ||||| || ||| | || || | |
Sbjct 54125 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATC 54184
Query 21954 ATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATC 21994
||| ||| ||| || || ||||| || || |||||| ||||
Sbjct 54185 ATGAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225
>seq1382
Length=172696
Score = 100 bits (110), Expect = 8e-17
Identities = 229/337 (68%), Gaps = 17/337 (5%)
Strand=Plus/Minus
Query 21614 GTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGC 21673
||||||||||||||| | || | || | | ||| ||||| | ||| ||||| ||
Sbjct 123832 GTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGCCAAGC 123773
Query 21674 AGCAAGAAAGAAATG--AAGAC-TA-CGGGAATTATTAAAGCTAGCATATTGGAAGATAA 21729
|| | || ||| |||| || || || || || || ||||||||||||| ||| |
Sbjct 123772 TGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAGGATCA 123713
Query 21730 GCCGACCAAAATAGCCGTGAGCAGCAACAA-----TATTGTAAGTCTCTTCC----TCTT 21780
|| | ||||| || |||||||| |||| ||||||||||||||||| ||||
Sbjct 123712 ATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTCTTCTT 123653
Query 21781 GACCAAACTTGTAACCATAGTTCTG-TGAAACCTCTTCAGTCGTCTCACGAATGAGTGAC 21839
|||| || ||||||| | | || || | | |||||| || || | || |
Sbjct 123652 GACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTA 123594
Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCC--GGCCA 21897
|| || |||| | ||| ||||||||| ||| | || || ||||| || || |
Sbjct 123593 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGAGCTA 123534
Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTG 21934
||| | ||||| || ||||||||||| || |||||
Sbjct 123533 GACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497
>seq1042
Length=564079
Score = 80.6 bits (88), Expect = 8e-11
Identities = 83/109 (76%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || | ||| | ||||| ||| || |||||||| || ||||||||||||||||| ||
Sbjct 550739 CCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 550798
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
| |||| ||| ||| || || || || || |||||| |||| ||||
Sbjct 550799 ATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAA 550847
>seq1024
Length=717246
Score = 80.6 bits (88), Expect = 8e-11
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 21474 AGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTGGCA 21533
||||| || ||||||||||| || || || |||||||| || || | |||||||| |||
Sbjct 156873 AGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCA 156814
Query 21534 CGGTTAAGAATGTCAGCCCAGGTGTTGAT 21562
||||| | || |||||||| ||||| ||
Sbjct 156813 CGGTTGATGATATCAGCCCAAGTGTTAAT 156785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146195396779020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |