Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq9 113 5e-20 seq3 102 9e-17 seq1382 91.5 2e-13 seq10 87.8 2e-12 seq1 84.2 3e-11 >seq9 Length=34148863 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 124474 TACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGA-ACA 124532 ||| ||| |||||| | ||||||| || ||||| || ||||| | || || | ||| Sbjct 1507147 TACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAGAAATACAATACA 1507088 Query 124533 TAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAA 124592 | ||||||||| | | || || || | ||||||||||||||||| || ||||||| Sbjct 1507087 TGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAA 1507029 Query 124593 ATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGA 124652 ||||| | ||||| ||||| ||||| | || || |||||||| |||||| | Sbjct 1507028 TAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAA 1506969 Query 124653 TCCAAGGACGCATTCC 124668 ||||||||||||| || Sbjct 1506968 TCCAAGGACGCATACC 1506953 >seq3 Length=30470407 Score = 102 bits (112), Expect = 9e-17 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||||||||| ||||| || || ||||| || |||||||||||||| || || Sbjct 26204968 TGGGCGGTGCAGATGTTGCTGGTGGCCTTATCTCTCCTGATATGCTGCTCTCTGGTCTGC 26205027 Query 139377 AGTGCTAATCTGTA-TGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTG 139433 | || ||| | | |||||| ||||| | ||| | ||||| || | ||||| Sbjct 26205028 ATCGC-CATCCGCAGTGCAGGCTTGCCAGAGGAGTCGACGCTGAC--CCCGATGATTCTA 26205084 Query 139434 CCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCG 139493 || || ||| | ||||| |||| | | ||| || | ||| |||||||| ||||| ||| Sbjct 26205085 CCGGGCATCATCCTCTTGTACTCCTGCGATGTGGCCAGGAACGCAGCATGCGGACCGCCG 26205144 Query 139494 TATCCCATAGGAATACCAAACCTTTG 139519 || ||||| || | || ||||| || Sbjct 26205145 TAGCCCATGGGCACCCCGAACCTCTG 26205170 >seq1382 Length=172696 Score = 91.5 bits (100), Expect = 2e-13 Identities = 226/337 (67%), Gaps = 17/337 (5%) Strand=Plus/Minus Query 124192 GTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATACAACAGGGAAAAC 124251 |||||| ||||| |||| ||||| | || || | ||| | || | ||| || || | Sbjct 123832 GTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGCCAAGC 123773 Query 124252 TGCTAGGAAG--AAGTGAAGACTT--CTTGAGTTGTTGAATGAAGCATACTGGAAGATAA 124307 ||| | ||| | || |||| | | ||||||||||| |||||| |||| ||| | Sbjct 123772 TGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAGGATCA 123713 Query 124308 GACGACCAAAGTAACCGTGTGCTGC-----TACTATGTTGTA----TGTTTCTTCTTCTT 124358 || | || ||||| || || || |||| | ||||| | || ||||||||| Sbjct 123712 ATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTCTTCTT 123653 Query 124359 GTCCGAACTTATAACCATAGTTCTG-TGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAA 124417 | ||||| | ||||| | | || || || | || || ||||| ||||| | | | Sbjct 123652 GACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTA 123594 Query 124418 GATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCC--TGCTA 124475 || || || | ||||||||||| || ||||| || || ||||| | || |||| Sbjct 123593 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGAGCTA 123534 Query 124476 CTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512 ||| ||||| || |||||||| || ||||| || Sbjct 123533 GACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497 >seq10 Length=33665772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 124472 GCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAAC 124531 ||||| ||| |||||| || ||||||| || ||||| || ||||| ||||| || | | Sbjct 4332995 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATC 4332936 Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572 || |||||||||||||| || || || | ||||||||||| Sbjct 4332935 ATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1 Length=27573629 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349 || |||||||||||| | || |||||||| | || || || || ||||||||||||| Sbjct 10971018 ACATACCTGTGCATTCATGTTAGCACCATCCATGTAAACTTGTCCTCCATTGTCATGAAT 10970959 Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 ||||| ||||||| |||| | |||| | || |||||||| || || ||||||| Sbjct 10970958 AATCTTGCATATCTCATCGATGCCTTCTTCATAGACTCCATGAGTTGACGGGTATGTAA 10970900 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||| ||||| | |||||||| || || |||||||| || ||||||||||| || Sbjct 10971561 ACACCAATGGGACCCATTCCAGGACCACCTCCACCATGTGGGATGCAGAATGTCTTGTGG 10971502 Query 138243 AAATTTAGATGACATACATCTGCACC 138268 | || |||||||| |||||||| || Sbjct 10971501 AGGTTAAGATGACAGACATCTGCTCC 10971476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578945863132680