Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020845.1
Length=180977
Score E
Sequences producing significant alignments: (Bits) Value
seq9 113 5e-20
seq3 102 9e-17
seq1382 91.5 2e-13
seq10 87.8 2e-12
seq1 84.2 3e-11
>seq9
Length=34148863
Score = 113 bits (124), Expect = 5e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 124474 TACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGA-ACA 124532
||| ||| |||||| | ||||||| || ||||| || ||||| | || || | |||
Sbjct 1507147 TACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAGAAATACAATACA 1507088
Query 124533 TAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAA 124592
| ||||||||| | | || || || | ||||||||||||||||| || |||||||
Sbjct 1507087 TGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAA 1507029
Query 124593 ATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGA 124652
||||| | ||||| ||||| ||||| | || || |||||||| |||||| |
Sbjct 1507028 TAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAA 1506969
Query 124653 TCCAAGGACGCATTCC 124668
||||||||||||| ||
Sbjct 1506968 TCCAAGGACGCATACC 1506953
>seq3
Length=30470407
Score = 102 bits (112), Expect = 9e-17
Identities = 149/206 (72%), Gaps = 6/206 (3%)
Strand=Plus/Plus
Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376
|| || ||||||||||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 26204968 TGGGCGGTGCAGATGTTGCTGGTGGCCTTATCTCTCCTGATATGCTGCTCTCTGGTCTGC 26205027
Query 139377 AGTGCTAATCTGTA-TGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTG 139433
| || ||| | | |||||| ||||| | ||| | ||||| || | |||||
Sbjct 26205028 ATCGC-CATCCGCAGTGCAGGCTTGCCAGAGGAGTCGACGCTGAC--CCCGATGATTCTA 26205084
Query 139434 CCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCG 139493
|| || ||| | ||||| |||| | | ||| || | ||| |||||||| ||||| |||
Sbjct 26205085 CCGGGCATCATCCTCTTGTACTCCTGCGATGTGGCCAGGAACGCAGCATGCGGACCGCCG 26205144
Query 139494 TATCCCATAGGAATACCAAACCTTTG 139519
|| ||||| || | || ||||| ||
Sbjct 26205145 TAGCCCATGGGCACCCCGAACCTCTG 26205170
>seq1382
Length=172696
Score = 91.5 bits (100), Expect = 2e-13
Identities = 226/337 (67%), Gaps = 17/337 (5%)
Strand=Plus/Minus
Query 124192 GTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATACAACAGGGAAAAC 124251
|||||| ||||| |||| ||||| | || || | ||| | || | ||| || || |
Sbjct 123832 GTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGCCAAGC 123773
Query 124252 TGCTAGGAAG--AAGTGAAGACTT--CTTGAGTTGTTGAATGAAGCATACTGGAAGATAA 124307
||| | ||| | || |||| | | ||||||||||| |||||| |||| ||| |
Sbjct 123772 TGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAGGATCA 123713
Query 124308 GACGACCAAAGTAACCGTGTGCTGC-----TACTATGTTGTA----TGTTTCTTCTTCTT 124358
|| | || ||||| || || || |||| | ||||| | || |||||||||
Sbjct 123712 ATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTCTTCTT 123653
Query 124359 GTCCGAACTTATAACCATAGTTCTG-TGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAA 124417
| ||||| | ||||| | | || || || | || || ||||| ||||| | | |
Sbjct 123652 GACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTA 123594
Query 124418 GATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCC--TGCTA 124475
|| || || | ||||||||||| || ||||| || || ||||| | || ||||
Sbjct 123593 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGAGCTA 123534
Query 124476 CTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATG 124512
||| ||||| || |||||||| || ||||| ||
Sbjct 123533 GACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497
>seq10
Length=33665772
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 124472 GCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAAC 124531
||||| ||| |||||| || ||||||| || ||||| || ||||| ||||| || | |
Sbjct 4332995 GCTACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATC 4332936
Query 124532 ATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATC 124572
|| |||||||||||||| || || || | |||||||||||
Sbjct 4332935 ATGAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
>seq1
Length=27573629
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 138290 ACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAAC 138349
|| |||||||||||| | || |||||||| | || || || || |||||||||||||
Sbjct 10971018 ACATACCTGTGCATTCATGTTAGCACCATCCATGTAAACTTGTCCTCCATTGTCATGAAT 10970959
Query 138350 GATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408
||||| ||||||| |||| | |||| | || |||||||| || || |||||||
Sbjct 10970958 AATCTTGCATATCTCATCGATGCCTTCTTCATAGACTCCATGAGTTGACGGGTATGTAA 10970900
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242
|||||||| ||||| | |||||||| || || |||||||| || ||||||||||| ||
Sbjct 10971561 ACACCAATGGGACCCATTCCAGGACCACCTCCACCATGTGGGATGCAGAATGTCTTGTGG 10971502
Query 138243 AAATTTAGATGACATACATCTGCACC 138268
| || |||||||| |||||||| ||
Sbjct 10971501 AGGTTAAGATGACAGACATCTGCTCC 10971476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578945863132680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |