Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq9 156 6e-33
seq1063 149 8e-31
seq1382 140 4e-28
seq10 140 4e-28
seq1042 118 1e-21
seq1035 105 9e-18
seq6 96.9 5e-15
>seq9
Length=34148863
Score = 156 bits (172), Expect = 6e-33
Identities = 161/208 (77%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 27147 GAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTG 27206
|||||| |||| ||||| | |||||| | | | ||||||||||| |||||||||||| |
Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100
Query 27207 GAATACAAG-CATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAG 27265
||||||| |||| |||| ||| | | ||| || || | ||||||| |||| ||||||
Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041
Query 27266 AACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAAT 27325
|||||||| | ||| |||| | ||| || ||| | ||||| || || ||||| ||||
Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981
Query 27326 ATGCTACACAGATCCATGGACGCATACC 27353
|||| ||| ||||| |||||||||||
Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACC 1506953
>seq1063
Length=431445
Score = 149 bits (164), Expect = 8e-31
Identities = 239/339 (71%), Gaps = 21/339 (6%)
Strand=Plus/Plus
Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988
||||| ||||| | |||||| || || ||||| ||||||||||| |||||||||||||
Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957
Query 26989 ATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG-----TTGTAG-GTCTCTTCTTCT 27042
||||| || | || || ||||| || || || || ||||| |||||||| |||
Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017
Query 27043 TGACCGAACTTATAACCATAGTT--CTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTG 27100
| |||||| | || | | | | || || ||||||| | || | || ||
Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075
Query 27101 AAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAG--C 27158
|||| |||| || ||||||| | || | |||||||| |||| |
Sbjct 54076 AAGAGTGGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 54126
Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218
||||| | |||||| || | ||||||||||| |||||||||||| | ||||||| |||
Sbjct 54127 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCAT 54186
Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATC 27257
| ||| ||||||||||| || |||| ||||||| ||||
Sbjct 54187 GAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225
>seq1382
Length=172696
Score = 140 bits (154), Expect = 4e-28
Identities = 241/344 (70%), Gaps = 17/344 (5%)
Strand=Plus/Minus
Query 26872 TTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGC 26931
||||| ||||||||||| ||| | ||| | || |||| |||||| |||| ||| |||
Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778
Query 26932 CATGCAGCAAGGAA--GAAGT--GCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAA 26987
|| || || | ||| | || ||| | || ||||||||||| |||||||||||
Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718
Query 26988 GATCAAACGACCGAAGTAGCCATGTGCTGCGACGA-----TGTTGTAGGTCT----CTTC 27038
|||||| || | || || ||||| || || || | | ||||| |||| ||||
Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658
Query 27039 TTCTTGACCGAACTTATAACCATAGTTCTG-TGACTCAGTTTCAGTCGTCTCACGGACGA 27097
|||||||||||| | ||||| | | || || || ||||||| || || | || |
Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599
Query 27098 GTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCC-- 27155
||| || |||| || ||||||||| ||| || || || |||||||| ||
Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539
Query 27156 AGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTT 27199
||| | ||| | ||||| || || ||||||||||| |||||||
Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495
>seq10
Length=33665772
Score = 140 bits (154), Expect = 4e-28
Identities = 237/339 (70%), Gaps = 21/339 (6%)
Strand=Plus/Minus
Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988
||||| ||||| | |||||| || | ||| ||||||||||| |||||||||| ||
Sbjct 4333222 GGCCACGCAGCCAAGAAGAAATGTCAAGAAGTCGAGTTGTTGAAACTAGCATATTGGCAG 4333163
Query 26989 ATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG-----TTGTAG-GTCTCTTCTTCT 27042
|||| || | || || ||||| || | || ||| ||||| |||||||| |||
Sbjct 4333162 TTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCTCT 4333103
Query 27043 TGACCGAACTTATAACCATAGTT--CTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTG 27100
| |||||| | || | | | | || || ||||||| | || | || ||
Sbjct 4333102 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 4333045
Query 27101 AAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAG--C 27158
|||| | |||| || ||||||| | || | |||||||| |||| |
Sbjct 4333044 AAGAGTTGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 4332994
Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218
||||| | |||||| || | ||||||||||| |||||||||||||||||||||| |||
Sbjct 4332993 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATCAT 4332934
Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATC 27257
| |||| ||||||||||| || || | ||||||| ||||
Sbjct 4332933 GAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895
>seq1042
Length=564079
Score = 118 bits (130), Expect = 1e-21
Identities = 100/123 (81%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 27153 CCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212
|||||||| ||| | ||||| || |||||||||||||| ||||| || |||||||||||
Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797
Query 27213 AAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTG 27272
|| |||| ||| |||||||||||||| || |||||||| |||| || | | |||||
Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857
Query 27273 ACC 27275
|||
Sbjct 550858 ACC 550860
>seq1035
Length=594915
Score = 105 bits (116), Expect = 9e-18
Identities = 235/347 (68%), Gaps = 32/347 (9%)
Strand=Plus/Minus
Query 23550 ACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATG----ATGCCAATAGAAGAGAC 23605
|| || ||||| ||||| ||||| ||||| || || | | ||||||| | |
Sbjct 237375 ACGAAGTCATAGGCACGTAGATTCAGAGCCAGACCGACTTACTACCCCAATAGCACTCAT 237316
Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665
||| | ||| | || | ||||| ||||||| | |||||| |||||| |||
Sbjct 237315 CCATAAACCTGTTACGGATACAAAAAACATAAGG--------CCAACGGTTATTGGAAAA 237264
Query 23666 CGCAACCCCGAA-----GATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTC 23720
|||||||| || |||||| ||||||||||| || || || ||||| ||||| |||
Sbjct 237263 AGCAACCCCTAAAGATGGATTTGGGACCAAAAACGGTTAGCAGTGACCATTGAATAAGTC 237204
Query 23721 TCCTCCTCCTGAGTGGAATCGAACGCTTTAA----AAGTGTTTGC-CTGTTCTCCATCTT 23775
|| || | ||||| | | || || || | || ||||| | ||| |||||||
Sbjct 237203 TCTTCGGCTTGAGTTGGGTTAAAAGCACGAACAGTATGTATTTGCACCGTT-ACCATCTT 237145
Query 23776 C--ATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAG 23833
| ||| ||||| || | |||| ||||||||||| | || || || | || |
Sbjct 237144 CGAATAAAGTGTTTTAT--ACAG----ACCATGAATAGCGCATAGCAGAGCAGCGCCTAA 237091
Query 23834 TATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTAT 23880
|| || |||||||||||||| || ||||| | |||||| ||||
Sbjct 237090 TACTCC-TAAACTCCCATCATATTCAAAGGGTTCAACGTCCAATTAT 237045
>seq6
Length=34899179
Score = 96.9 bits (106), Expect = 5e-15
Identities = 104/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Plus
Query 24051 AGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAG 24110
|||| || ||||||||||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct 26461142 AGTTAGAATTGACGTAACATAAG-CCTATTAGTGCGAAAGCACCATGGAGAGCAACAAAA 26461200
Query 24111 GACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAA 24170
| ||| || || || | |||| ||||| ||| || ||||| | |||||||||||
Sbjct 26461201 GTCCACAGACCGCCTAATTGG---CACCGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 26461257
Query 24171 AGTAGAAGAAGAGAAT 24186
||||| | | |||||
Sbjct 26461258 AGTAGCAACAAAGAAT 26461273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665434014701880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |