Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq9 156 6e-33 seq1063 149 8e-31 seq1382 140 4e-28 seq10 140 4e-28 seq1042 118 1e-21 seq1035 105 9e-18 seq6 96.9 5e-15 >seq9 Length=34148863 Score = 156 bits (172), Expect = 6e-33 Identities = 161/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 27147 GAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTG 27206 |||||| |||| ||||| | |||||| | | | ||||||||||| |||||||||||| | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 27207 GAATACAAG-CATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAG 27265 ||||||| |||| |||| ||| | | ||| || || | ||||||| |||| |||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 27266 AACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAAT 27325 |||||||| | ||| |||| | ||| || ||| | ||||| || || ||||| |||| Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981 Query 27326 ATGCTACACAGATCCATGGACGCATACC 27353 |||| ||| ||||| ||||||||||| Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACC 1506953 >seq1063 Length=431445 Score = 149 bits (164), Expect = 8e-31 Identities = 239/339 (71%), Gaps = 21/339 (6%) Strand=Plus/Plus Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988 ||||| ||||| | |||||| || || ||||| ||||||||||| ||||||||||||| Sbjct 53898 GGCCACGCAGCCAAGAAGAAATGTAAAGAACGAGAGTTGTTGAAACTAGCATATTGGAAG 53957 Query 26989 ATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG-----TTGTAG-GTCTCTTCTTCT 27042 ||||| || | || || ||||| || || || || ||||| |||||||| ||| Sbjct 53958 ATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAAGTCTCTTCCTCT 54017 Query 27043 TGACCGAACTTATAACCATAGTT--CTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTG 27100 | |||||| | || | | | | || || ||||||| | || | || || Sbjct 54018 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 54075 Query 27101 AAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAG--C 27158 |||| |||| || ||||||| | || | |||||||| |||| | Sbjct 54076 AAGAGTGGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 54126 Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218 ||||| | |||||| || | ||||||||||| |||||||||||| | ||||||| ||| Sbjct 54127 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCAGTAATACAATCAT 54186 Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATC 27257 | ||| ||||||||||| || |||| ||||||| |||| Sbjct 54187 GAAGTAGAAAGTACCAGATATTCCAAAAGGCATACCATC 54225 >seq1382 Length=172696 Score = 140 bits (154), Expect = 4e-28 Identities = 241/344 (70%), Gaps = 17/344 (5%) Strand=Plus/Minus Query 26872 TTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGC 26931 ||||| ||||||||||| ||| | ||| | || |||| |||||| |||| ||| ||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 26932 CATGCAGCAAGGAA--GAAGT--GCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAA 26987 || || || | ||| | || ||| | || ||||||||||| ||||||||||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTAGCATATTGGAG 123718 Query 26988 GATCAAACGACCGAAGTAGCCATGTGCTGCGACGA-----TGTTGTAGGTCT----CTTC 27038 |||||| || | || || ||||| || || || | | ||||| |||| |||| Sbjct 123717 GATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTTC 123658 Query 27039 TTCTTGACCGAACTTATAACCATAGTTCTG-TGACTCAGTTTCAGTCGTCTCACGGACGA 27097 |||||||||||| | ||||| | | || || || ||||||| || || | || | Sbjct 123657 TTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATCA 123599 Query 27098 GTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCC-- 27155 ||| || |||| || ||||||||| ||| || || || |||||||| || Sbjct 123598 AACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 123539 Query 27156 AGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTT 27199 ||| | ||| | ||||| || || ||||||||||| ||||||| Sbjct 123538 AGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTGTT 123495 >seq10 Length=33665772 Score = 140 bits (154), Expect = 4e-28 Identities = 237/339 (70%), Gaps = 21/339 (6%) Strand=Plus/Minus Query 26929 GGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAG 26988 ||||| ||||| | |||||| || | ||| ||||||||||| |||||||||| || Sbjct 4333222 GGCCACGCAGCCAAGAAGAAATGTCAAGAAGTCGAGTTGTTGAAACTAGCATATTGGCAG 4333163 Query 26989 ATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG-----TTGTAG-GTCTCTTCTTCT 27042 |||| || | || || ||||| || | || ||| ||||| |||||||| ||| Sbjct 4333162 TTCAATCGGCTTAAATAACCATGAGCAACTACAATGCTCTATTGTAAAGTCTCTTCCTCT 4333103 Query 27043 TGACCGAACTTATAACCATAGTT--CTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTG 27100 | |||||| | || | | | | || || ||||||| | || | || || Sbjct 4333102 TTACCGAATCAGTCAC--TTGCTAACGCGGATTCGTTTTCAGTGATTTCCCTGATGAAAC 4333045 Query 27101 AAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAG--C 27158 |||| | |||| || ||||||| | || | |||||||| |||| | Sbjct 4333044 AAGAGTTGACCAAGGAACCATGCATAGTACT----AGGG-----CCGAATACACCAGAGC 4332994 Query 27159 AACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCAT 27218 ||||| | |||||| || | ||||||||||| |||||||||||||||||||||| ||| Sbjct 4332993 TACACCTAACATGTGAAATAGATGCATAAGGATGTTGTGTTCTGCCTGGAATACAATCAT 4332934 Query 27219 GTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATC 27257 | |||| ||||||||||| || || | ||||||| |||| Sbjct 4332933 GAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATC 4332895 >seq1042 Length=564079 Score = 118 bits (130), Expect = 1e-21 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27153 CCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATAC 27212 |||||||| ||| | ||||| || |||||||||||||| ||||| || ||||||||||| Sbjct 550738 CCCAGCAAAACCTAACATGTTAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 550797 Query 27213 AAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTG 27272 || |||| ||| |||||||||||||| || |||||||| |||| || | | ||||| Sbjct 550798 AATCATGAAGTGGAAAGTACCAGAGATTCCGTGAGGCATACCATCTGAAACACTTCCTTG 550857 Query 27273 ACC 27275 ||| Sbjct 550858 ACC 550860 >seq1035 Length=594915 Score = 105 bits (116), Expect = 9e-18 Identities = 235/347 (68%), Gaps = 32/347 (9%) Strand=Plus/Minus Query 23550 ACAAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATG----ATGCCAATAGAAGAGAC 23605 || || ||||| ||||| ||||| ||||| || || | | ||||||| | | Sbjct 237375 ACGAAGTCATAGGCACGTAGATTCAGAGCCAGACCGACTTACTACCCCAATAGCACTCAT 237316 Query 23606 CCAAAGACCCATGACAGGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAA 23665 ||| | ||| | || | ||||| ||||||| | |||||| |||||| ||| Sbjct 237315 CCATAAACCTGTTACGGATACAAAAAACATAAGG--------CCAACGGTTATTGGAAAA 237264 Query 23666 CGCAACCCCGAA-----GATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTC 23720 |||||||| || |||||| ||||||||||| || || || ||||| ||||| ||| Sbjct 237263 AGCAACCCCTAAAGATGGATTTGGGACCAAAAACGGTTAGCAGTGACCATTGAATAAGTC 237204 Query 23721 TCCTCCTCCTGAGTGGAATCGAACGCTTTAA----AAGTGTTTGC-CTGTTCTCCATCTT 23775 || || | ||||| | | || || || | || ||||| | ||| ||||||| Sbjct 237203 TCTTCGGCTTGAGTTGGGTTAAAAGCACGAACAGTATGTATTTGCACCGTT-ACCATCTT 237145 Query 23776 C--ATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAG 23833 | ||| ||||| || | |||| ||||||||||| | || || || | || | Sbjct 237144 CGAATAAAGTGTTTTAT--ACAG----ACCATGAATAGCGCATAGCAGAGCAGCGCCTAA 237091 Query 23834 TATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTAT 23880 || || |||||||||||||| || ||||| | |||||| |||| Sbjct 237090 TACTCC-TAAACTCCCATCATATTCAAAGGGTTCAACGTCCAATTAT 237045 >seq6 Length=34899179 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/136 (76%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 24051 AGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAACAAAG 24110 |||| || ||||||||||||| ||||| ||||| || ||||| |||||||||||||| Sbjct 26461142 AGTTAGAATTGACGTAACATAAG-CCTATTAGTGCGAAAGCACCATGGAGAGCAACAAAA 26461200 Query 24111 GACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAA 24170 | ||| || || || | |||| ||||| ||| || ||||| | ||||||||||| Sbjct 26461201 GTCCACAGACCGCCTAATTGG---CACCGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 26461257 Query 24171 AGTAGAAGAAGAGAAT 24186 ||||| | | ||||| Sbjct 26461258 AGTAGCAACAAAGAAT 26461273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665434014701880