Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq9 149 7e-31
seq7 132 6e-26
seq6 129 7e-25
seq1022 123 3e-23
seq4 89.7 6e-13
seq10 84.2 3e-11
>seq9
Length=34148863
Score = 149 bits (164), Expect = 7e-31
Identities = 242/343 (71%), Gaps = 4/343 (1%)
Strand=Plus/Plus
Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125
||||||||||||||||||| |||| || || || || ||||| |||||||||||||| |
Sbjct 33079398 GCTCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTT 33079457
Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185
| ||||||||||| | ||| | ||||| || || |||||||| ||||| |||||| |
Sbjct 33079458 CCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCA 33079517
Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245
| ||||| || ||||| || ||||| |||||| || || ||| |||| | ||
Sbjct 33079518 ACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC-AGC 33079576
Query 65246 CT-TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304
|| | || || | | | ||| | ||| || ||||| || || |||||
Sbjct 33079577 CTCCTCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGAC 33079636
Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGA 65363
|| ||| | |||| ||| ||||||||||| ||| |||| |||| |||||| |||
Sbjct 33079637 ATCGAGCGGGAGTTCGTCTGCGACGCACTCCC-TGTCGCTCTCGTCGGGATGAACGTTGA 33079695
Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406
||| | ||||||| |||| ||| | || || || |||
Sbjct 33079696 TCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTC 33079738
Score = 123 bits (136), Expect = 3e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125
|||| || |||||||| || | || || || ||||| ||||| ||||||||||| || |
Sbjct 1096827 GCTCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCT 1096886
Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185
| ||||||||||| | |||| | |||||||| || |||||||| || || |||||| |
Sbjct 1096887 CCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGA 1096946
Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216
| || ||||| ||||| || ||||| || ||
Sbjct 1096947 ACGAGCTTATCTCCCGTGACGAGGGCCTTCA 1096977
Score = 84.2 bits (92), Expect = 3e-11
Identities = 209/315 (66%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|| || ||||||||| ||| ||| | | ||| || || || || || || ||
Sbjct 28871705 GGGGCGAAGATCCCCAAAGGTTGCCTCTTGGTGGGCCCACCCGGCACCGGCAAAACGCTG 28871764
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395
|| |||||||| | ||||| || | || || ||| || |||| | || | |
Sbjct 28871765 CTGGCCCGAGCTGTGGCGGGAGAGGCCGGCGTGCCCTTCTTCTCGTGCGCGGCGTCCGAG 28871824
Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455
|| |||||| |||| || |||||||| || ||||| || ||| | || || | ||
Sbjct 28871825 TTCGTGGAGCTGTTCGTGGGTGTGGGGGCGTCGAGGGTCCGGGATTTATTCGAGAAAGCG 28871884
Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515
| || ||| || ||||| ||||| ||||| |||||||||||||| | ||| |
Sbjct 28871885 AAGGCTAAGGCACCTTGCATTGTGTTCATCGATGAAATTGATGCGGTGGGAAGGCAGAGG 28871944
Query 175516 AGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574
| || || | | || | || || ||||| || || || || ||||| || | ||
Sbjct 28871945 GGGGCCGG-GCTTGGCGGTGGCAACGATGAGAGGGAGCAGACCATCAATCAGCTCTTGAC 28872003
Query 175575 CGAGATGGATGGCTT 175589
||||||||||| ||
Sbjct 28872004 AGAGATGGATGGGTT 28872018
>seq7
Length=28617404
Score = 132 bits (146), Expect = 6e-26
Identities = 251/365 (69%), Gaps = 6/365 (2%)
Strand=Plus/Plus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
||||| || |||||||| || || ||| || || || |||||| || |||||||||
Sbjct 3465065 CCAGGAACTGGAAAGACTCTGCTTGCCAAGGCAATTGCTGGTGAAGCAGGTGTCCCATTT 3465124
Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433
|| || | || | | | ||||| || |||||||||||||| ||||| | | ||
Sbjct 3465125 TTCTCAATT-TCAGGATCTGAATTTGTAGAAATGTTTGTTGGTGTCGGTGCTTCACGAGT 3465183
Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
||| || || || | | ||| || ||| || |||||||| || ||||||||||
Sbjct 3465184 TCGTGACCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTGTTTGTTGATGAGAT 3465243
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551
|||||| || || | |||| | | | || | | | | || |||||| || ||||||
Sbjct 3465244 TGATGCCGTTGGTAGGCAAAGAGGAACAGGAATTGGAGG--AGGAAATGATGAAAGAGAA 3465301
Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611
|| || | ||||| || | || || |||||||||||||| | ||||| || |
Sbjct 3465302 CAGACTCTCAATCAGCTTTTGACTGAAATGGATGGCTTTGAAGGAAATACTGGTATAATT 3465361
Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671
|| ||||| || || || || | || || || ||| || | ||||| || |||||
Sbjct 3465362 GTCATTGCAGCGACCAACCGTGCAGACATTCTGGATTCTGCTTTACTTCGGCCTGGTCGA 3465421
Query 175672 TTTGA 175676
|||||
Sbjct 3465422 TTTGA 3465426
>seq6
Length=34899179
Score = 129 bits (142), Expect = 7e-25
Identities = 119/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126
||| |||||||||||||| |||| || || || || ||||| ||||||||||||| ||
Sbjct 15336856 CTCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTC 15336915
Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186
|||||||| || | ||| | |||||||| || |||||||| || || |||||||||
Sbjct 15336916 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAA 15336975
Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|| || || ||||| || ||||| ||||||
Sbjct 15336976 CGAGCTCATCTCCCGTGACGAGGGCCTCCAC 15337006
Score = 123 bits (136), Expect = 3e-23
Identities = 150/204 (74%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 65025 GAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCT 65084
|||||| ||||||| | ||||| |||| | || |||||||||||||||| ||
Sbjct 4328535 GAAGGCCGAATGGGCTCTCCAATGGATTGAGTCT---TCCGGCTCCTTCGCCGAGCGACT 4328591
Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144
| || || || || || ||||| ||||| |||||||| || |||||||| || | ||
Sbjct 4328592 CGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTG 4328651
Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204
| | |||||||| || |||||||| || || |||||| || || || || ||||| ||
Sbjct 4328652 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 4328711
Query 65205 TGAGGGTCTCCACCAGGAGTTTGC 65228
||||| || ||| || |||||
Sbjct 4328712 CGAGGGCCTTCACTGCGACTTTGC 4328735
>seq1022
Length=749713
Score = 123 bits (136), Expect = 3e-23
Identities = 275/407 (68%), Gaps = 12/407 (3%)
Strand=Plus/Minus
Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335
|||||| ||||| ||| | |||||| | ||| ||||| || || |||||| |
Sbjct 665813 GGTGCCCGTATCCCTAAAGGTGTCCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCTTG 665754
Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394
|| || || || || ||||| || ||||||||| || || | || | | |
Sbjct 665753 CTTGCTAAGGCAATTGCTGGTGAGGCAGGTGTCCCATTTTTCTCAATT-TCCGGATCTGA 665695
Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454
||||| || |||||||||||||| ||||| | ||||| ||||| || | | ||
Sbjct 665694 ATTTGTAGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGTGATCTTTTCAAGAAGGC 665635
Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514
| || ||| || || ||||| || |||||||||||||||| || || | |||| |
Sbjct 665634 CAAAGAGAATGCTCCTTGCATTGTGTTTGTTGATGAGATTGATGCTGTTGGAAGGCAAAG 665575
Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572
| | || | | | | || |||||| || || ||||| || ||||||| || |
Sbjct 665574 AGGAACAGGAATCGGAGG--AGGAAATGATGAAAGGGAACAGACTCTTAATCAGCTTTTG 665517
Query 175573 ACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629
|||||||||||||||||||| |||| || || || | || || || || || ||
Sbjct 665516 ACCGAGATGGATGGCTTTGAAGGCAAT---ACAGGTATAATTGTGATCGCAGCAACCAAC 665460
Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676
|||| || || || ||| || | ||||| || || || |||||
Sbjct 665459 CGCGCAGACATTCTAGATTCTGCTTTGCTTCGACCTGGGCGATTTGA 665413
>seq4
Length=30051516
Score = 89.7 bits (98), Expect = 6e-13
Identities = 191/283 (67%), Gaps = 2/283 (1%)
Strand=Plus/Minus
Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367
|||| ||| ||||| || ||||| || || || | || | || || || | ||
Sbjct 3938979 GGGTCCGCCGGGTACCGGCAAGACGCTGCTGGCGAGGGCGGTGGCAGGAGAGGCCGGAGT 3938920
Query 175368 CCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA 175427
||| ||| || ||| | || | | || |||||| | ||||| || ||||| ||
Sbjct 3938919 CCCGTTCTTCTCGTGTGCAGCGTCCGAGTTCGTGGAGCTATTTGTGGGAGTGGGGGCGTC 3938860
Query 175428 AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGA 175487
||||| || ||||| ||||| | || | || ||| || ||||| ||||| ||
Sbjct 3938859 GAGGGTCCGGGATCTGTTTGAGAAGGCAAAGGCTAAGGCACCGTGCATTGTTTTCATCGA 3938800
Query 175488 TGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGA 175546
||| |||||||||||||| | ||| | | ||||| | | || | ||||| ||||
Sbjct 3938799 TGAAATTGATGCGGTGGGAAGGCAGAGAGGAGCTGG-GCTTGGCGGTGGCAATGATGAGA 3938741
Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589
| || || || || ||||| || | || ||||||||||| ||
Sbjct 3938740 GGGAGCAGACTATCAATCAGCTCTTGACGGAGATGGATGGGTT 3938698
>seq10
Length=33665772
Score = 84.2 bits (92), Expect = 3e-11
Identities = 160/233 (69%), Gaps = 12/233 (5%)
Strand=Plus/Plus
Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461
||||||||||| || ||||| || || || || ||||| ||| | | || ||
Sbjct 32122793 GAGATGTTTGTCGGAGTGGGGGCTTCGAGAGTGCGGGATCTGTTTAACAAGGCA----AA 32122848
Query 175462 AATCAAC----CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAG 175517
|| ||| |||| | || || ||||||||||||||||| || || | ||| | |
Sbjct 32122849 GATGAACTCTCCATGCCTGGTATTTATTGATGAGATTGATGCAGTAGGAAGGCAGAGGGG 32122908
Query 175518 CGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575
| || | | | | || |||||| || |||||||| ||| | ||||| ||||||||
Sbjct 32122909 AACAGGAATTGGAGG--AGGAAATGATGAAAGAGAACAGACACTGAATCAGCTACTCACT 32122966
Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628
|| |||||||| ||| ||| | ||| || | || ||||| || |||||
Sbjct 32122967 GAAATGGATGGTTTTAGTGGTGATAGTGGAGTTATTGTAATTGCTGCTACTAA 32123019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596515468765920
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