Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 149 7e-31 seq7 132 6e-26 seq6 129 7e-25 seq1022 123 3e-23 seq4 89.7 6e-13 seq10 84.2 3e-11 >seq9 Length=34148863 Score = 149 bits (164), Expect = 7e-31 Identities = 242/343 (71%), Gaps = 4/343 (1%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 ||||||||||||||||||| |||| || || || || ||||| |||||||||||||| | Sbjct 33079398 GCTCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGTT 33079457 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | ||||||||||| | ||| | ||||| || || |||||||| ||||| |||||| | Sbjct 33079458 CCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCA 33079517 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGA 65245 | ||||| || ||||| || ||||| |||||| || || ||| |||| | || Sbjct 33079518 ACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTAC-AGC 33079576 Query 65246 CT-TTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAG 65304 || | || || | | | ||| | ||| || ||||| || || ||||| Sbjct 33079577 CTCCTCCGCAACAAGCTGTCCGAGGAAGCGGTCCGGGCAATCGTTGCGGACGCTGTTGAC 33079636 Query 65305 ATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCTGA 65363 || ||| | |||| ||| ||||||||||| ||| |||| |||| |||||| ||| Sbjct 33079637 ATCGAGCGGGAGTTCGTCTGCGACGCACTCCC-TGTCGCTCTCGTCGGGATGAACGTTGA 33079695 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTC 65406 ||| | ||||||| |||| ||| | || || || ||| Sbjct 33079696 TCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCCTGCTC 33079738 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 |||| || |||||||| || | || || || ||||| ||||| ||||||||||| || | Sbjct 1096827 GCTCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCT 1096886 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | ||||||||||| | |||| | |||||||| || |||||||| || || |||||| | Sbjct 1096887 CCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGA 1096946 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 | || ||||| ||||| || ||||| || || Sbjct 1096947 ACGAGCTTATCTCCCGTGACGAGGGCCTTCA 1096977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/315 (66%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || || ||||||||| ||| ||| | | ||| || || || || || || || Sbjct 28871705 GGGGCGAAGATCCCCAAAGGTTGCCTCTTGGTGGGCCCACCCGGCACCGGCAAAACGCTG 28871764 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || |||||||| | ||||| || | || || ||| || |||| | || | | Sbjct 28871765 CTGGCCCGAGCTGTGGCGGGAGAGGCCGGCGTGCCCTTCTTCTCGTGCGCGGCGTCCGAG 28871824 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || |||||| |||| || |||||||| || ||||| || ||| | || || | || Sbjct 28871825 TTCGTGGAGCTGTTCGTGGGTGTGGGGGCGTCGAGGGTCCGGGATTTATTCGAGAAAGCG 28871884 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || ||| || ||||| ||||| ||||| |||||||||||||| | ||| | Sbjct 28871885 AAGGCTAAGGCACCTTGCATTGTGTTCATCGATGAAATTGATGCGGTGGGAAGGCAGAGG 28871944 Query 175516 AGCGCTGGTGGTATGC-CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | || || | | || | || || ||||| || || || || ||||| || | || Sbjct 28871945 GGGGCCGG-GCTTGGCGGTGGCAACGATGAGAGGGAGCAGACCATCAATCAGCTCTTGAC 28872003 Query 175575 CGAGATGGATGGCTT 175589 ||||||||||| || Sbjct 28872004 AGAGATGGATGGGTT 28872018 >seq7 Length=28617404 Score = 132 bits (146), Expect = 6e-26 Identities = 251/365 (69%), Gaps = 6/365 (2%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || ||| || || || |||||| || ||||||||| Sbjct 3465065 CCAGGAACTGGAAAGACTCTGCTTGCCAAGGCAATTGCTGGTGAAGCAGGTGTCCCATTT 3465124 Query 175375 ATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 || || | || | | | ||||| || |||||||||||||| ||||| | | || Sbjct 3465125 TTCTCAATT-TCAGGATCTGAATTTGTAGAAATGTTTGTTGGTGTCGGTGCTTCACGAGT 3465183 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 ||| || || || | | ||| || ||| || |||||||| || |||||||||| Sbjct 3465184 TCGTGACCTTTTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTGTTTGTTGATGAGAT 3465243 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||| || || | |||| | | | || | | | | || |||||| || |||||| Sbjct 3465244 TGATGCCGTTGGTAGGCAAAGAGGAACAGGAATTGGAGG--AGGAAATGATGAAAGAGAA 3465301 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTG 175611 || || | ||||| || | || || |||||||||||||| | ||||| || | Sbjct 3465302 CAGACTCTCAATCAGCTTTTGACTGAAATGGATGGCTTTGAAGGAAATACTGGTATAATT 3465361 Query 175612 GTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGT 175671 || ||||| || || || || | || || || ||| || | ||||| || ||||| Sbjct 3465362 GTCATTGCAGCGACCAACCGTGCAGACATTCTGGATTCTGCTTTACTTCGGCCTGGTCGA 3465421 Query 175672 TTTGA 175676 ||||| Sbjct 3465422 TTTGA 3465426 >seq6 Length=34899179 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 ||| |||||||||||||| |||| || || || || ||||| ||||||||||||| || Sbjct 15336856 CTCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGAGTCTTCTTCTCCGGCTC 15336915 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||||| || | ||| | |||||||| || |||||||| || || ||||||||| Sbjct 15336916 CTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTCTCAAA 15336975 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 15336976 CGAGCTCATCTCCCGTGACGAGGGCCTCCAC 15337006 Score = 123 bits (136), Expect = 3e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 65025 GAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAGCGCCT 65084 |||||| ||||||| | ||||| |||| | || |||||||||||||||| || Sbjct 4328535 GAAGGCCGAATGGGCTCTCCAATGGATTGAGTCT---TCCGGCTCCTTCGCCGAGCGACT 4328591 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 | || || || || || ||||| ||||| |||||||| || |||||||| || | || Sbjct 4328592 CGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTG 4328651 Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204 | | |||||||| || |||||||| || || |||||| || || || || ||||| || Sbjct 4328652 GCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGA 4328711 Query 65205 TGAGGGTCTCCACCAGGAGTTTGC 65228 ||||| || ||| || ||||| Sbjct 4328712 CGAGGGCCTTCACTGCGACTTTGC 4328735 >seq1022 Length=749713 Score = 123 bits (136), Expect = 3e-23 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 |||||| ||||| ||| | |||||| | ||| ||||| || || |||||| | Sbjct 665813 GGTGCCCGTATCCCTAAAGGTGTCCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCTTG 665754 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAA 175394 || || || || || ||||| || ||||||||| || || | || | | | Sbjct 665753 CTTGCTAAGGCAATTGCTGGTGAGGCAGGTGTCCCATTTTTCTCAATT-TCCGGATCTGA 665695 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||| || |||||||||||||| ||||| | ||||| ||||| || | | || Sbjct 665694 ATTTGTAGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTTCGTGATCTTTTCAAGAAGGC 665635 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | || ||| || || ||||| || |||||||||||||||| || || | |||| | Sbjct 665634 CAAAGAGAATGCTCCTTGCATTGTGTTTGTTGATGAGATTGATGCTGTTGGAAGGCAAAG 665575 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | | || | | | | || |||||| || || ||||| || ||||||| || | Sbjct 665574 AGGAACAGGAATCGGAGG--AGGAAATGATGAAAGGGAACAGACTCTTAATCAGCTTTTG 665517 Query 175573 ACCGAGATGGATGGCTTTGA---CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 |||||||||||||||||||| |||| || || || | || || || || || || Sbjct 665516 ACCGAGATGGATGGCTTTGAAGGCAAT---ACAGGTATAATTGTGATCGCAGCAACCAAC 665460 Query 175630 CGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||| || || || ||| || | ||||| || || || ||||| Sbjct 665459 CGCGCAGACATTCTAGATTCTGCTTTGCTTCGACCTGGGCGATTTGA 665413 >seq4 Length=30051516 Score = 89.7 bits (98), Expect = 6e-13 Identities = 191/283 (67%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 175308 GGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGT 175367 |||| ||| ||||| || ||||| || || || | || | || || || | || Sbjct 3938979 GGGTCCGCCGGGTACCGGCAAGACGCTGCTGGCGAGGGCGGTGGCAGGAGAGGCCGGAGT 3938920 Query 175368 CCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA 175427 ||| ||| || ||| | || | | || |||||| | ||||| || ||||| || Sbjct 3938919 CCCGTTCTTCTCGTGTGCAGCGTCCGAGTTCGTGGAGCTATTTGTGGGAGTGGGGGCGTC 3938860 Query 175428 AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGA 175487 ||||| || ||||| ||||| | || | || ||| || ||||| ||||| || Sbjct 3938859 GAGGGTCCGGGATCTGTTTGAGAAGGCAAAGGCTAAGGCACCGTGCATTGTTTTCATCGA 3938800 Query 175488 TGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC-CAGCAAATGACGAGA 175546 ||| |||||||||||||| | ||| | | ||||| | | || | ||||| |||| Sbjct 3938799 TGAAATTGATGCGGTGGGAAGGCAGAGAGGAGCTGG-GCTTGGCGGTGGCAATGATGAGA 3938741 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 | || || || || ||||| || | || ||||||||||| || Sbjct 3938740 GGGAGCAGACTATCAATCAGCTCTTGACGGAGATGGATGGGTT 3938698 >seq10 Length=33665772 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 175402 GAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA 175461 ||||||||||| || ||||| || || || || ||||| ||| | | || || Sbjct 32122793 GAGATGTTTGTCGGAGTGGGGGCTTCGAGAGTGCGGGATCTGTTTAACAAGGCA----AA 32122848 Query 175462 AATCAAC----CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAG 175517 || ||| |||| | || || ||||||||||||||||| || || | ||| | | Sbjct 32122849 GATGAACTCTCCATGCCTGGTATTTATTGATGAGATTGATGCAGTAGGAAGGCAGAGGGG 32122908 Query 175518 CGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | || | | | | || |||||| || |||||||| ||| | ||||| |||||||| Sbjct 32122909 AACAGGAATTGGAGG--AGGAAATGATGAAAGAGAACAGACACTGAATCAGCTACTCACT 32122966 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 || |||||||| ||| ||| | ||| || | || ||||| || ||||| Sbjct 32122967 GAAATGGATGGTTTTAGTGGTGATAGTGGAGTTATTGTAATTGCTGCTACTAA 32123019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596515468765920