Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1382 131 2e-25 seq9 102 1e-16 >seq1382 Length=172696 Score = 131 bits (144), Expect = 2e-25 Identities = 240/343 (70%), Gaps = 19/343 (6%) Strand=Plus/Minus Query 8029 TTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGG 8088 || ||||| || ||||| |||| |||||| | || || | ||| | || | |||||| Sbjct 123837 TTGAGGTTGAAAGCCATGGTGCTAATACCTAAAGCTGTGACCCAGATACCAATAACTGGC 123778 Query 8089 AATGTAGCGAGGAAG--AAGTGAAGACTT--CTACTGTTGTT-AAACGATGCATACTGGA 8143 | | || | ||| | || |||| | | | |||||| |||| | ||||| |||| Sbjct 123777 CAAGCTGCCAAGAATCCATGTCAAGAAGTAGCGAGAGTTGTTGAAACTA-GCATATTGGA 123719 Query 8144 AGATTAATCTACCAAAGTATCCATGAGCAGCAACAATA-----TTATAGGTCTCTTC--- 8195 ||| |||| | || || ||||||||||| |||||| || || |||||||| Sbjct 123718 GGATCAATCGGCTTAAATAACCATGAGCAGCTACAATACTCTATTGTAAGTCTCTTCCTT 123659 Query 8196 -TTCTTGACCAAACTTATAACCATAGTTCTG-AGACTCTTCTTCAGTTGTCTCTCTGATT 8253 ||||||||| || | ||||| | | || ||| || | |||||| || || ||||| Sbjct 123658 CTTCTTGACCGAATCTGTAACC-TGCTAATGCAGATTCGTTTTCAGTGGTTTCCCTGATC 123600 Query 8254 AGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATACC- 8312 | | ||| || || || ||||| |||||||||||||| || || || ||||| | ||| Sbjct 123599 AAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCA 123540 Query 8313 -TGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 |||| ||| ||| | || ||||||||||| ||||| || Sbjct 123539 GAGCTAGACCTAACATGTTCAATGGATGCATAAGGATGTTGTG 123497 >seq9 Length=34148863 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 8304 GAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTG 8363 ||| | ||| | ||| ||| ||| || | |||||||||| ||||| || ||||| | Sbjct 1507159 GAATACACCAGTTACACCTAACATGTGAACCAGATGCATAAGGATGTTGTGTTCTGCCAG 1507100 Query 8364 GAATACGA-ACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATG 8422 ||||| | |||||||||| || | | ||| || |||| |||||| ||||||||||| Sbjct 1507099 AAATACAATACATGAAGTTGAAA-TGCTAGATATTCCTAAAGGCATACCATCAGAGAAAC 1507041 Query 8423 AACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTAT 8482 || ||||||| || || | ||||| || || |||||| | || ||||| || Sbjct 1507040 TTCCTTGACCAATAGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAAT 1506981 Query 8483 ATGCTACACAGATCCATGGTCTCATACC 8510 |||| ||| ||||| || | |||||| Sbjct 1506980 ATGCAACAGCAATCCAAGGACGCATACC 1506953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615806518185480