Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855. 2_202012-11-14] 7,259 sequences; 472,231,289 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1382 127 2e-24 seq9 125 8e-24 seq1063 116 4e-21 seq10 116 4e-21 seq4 100 3e-16 seq1042 91.5 2e-13 seq1035 91.5 2e-13 seq1290 89.7 6e-13 seq480 89.7 6e-13 seq2320 82.4 9e-11 >seq1382 Length=172696 Score = 127 bits (140), Expect = 2e-24 Identities = 236/342 (69%), Gaps = 17/342 (5%) Strand=Plus/Plus Query 166288 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 166345 ||||| || || |||||||| || | ||| | || | ||| || ||||| || ||| Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556 Query 166346 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405 | || ||||||||||| || ||||| || ||| | | | || || || |||| Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616 Query 166406 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACA----TACAA 166460 ||| |||||| || | | ||||||| ||||| |||||||||| || | ||||| Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675 Query 166461 CA-----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 166515 | | ||||| ||||||||||| || | || |||||| ||||||| ||| ||| Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735 Query 166516 AACAACTCCCGCTCCTT----GCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTG 166571 |||||||| |||| ||| || ||| | || || ||||| ||| | || ||||| Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795 Query 166572 GTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAA 166613 | |||| || | || | ||| ||||| |||||||| || Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837 >seq9 Length=34148863 Score = 125 bits (138), Expect = 8e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155 ||||| | || ||||| ||||| || | ||| ||||||||||| ||||| |||| Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976 Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215 || || ||||| || || || ||||| | ||| || ||| | | || ||| | |||||| Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036 Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGT-TGGT 166274 || ||||||||||||| ||||| | ||||| || | | ||||||| ||||| | || Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095 Query 166275 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 166334 || | || || ||||| || || ||||||| | || ||| | || || |||| || Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155 Query 166335 ATT 166337 ||| Sbjct 1507156 ATT 1507158 >seq1063 Length=431445 Score = 116 bits (128), Expect = 4e-21 Identities = 232/340 (68%), Gaps = 19/340 (6%) Strand=Plus/Minus Query 166228 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 166287 |||| ||||| | ||||| || || || ||| ||| |||| | || || | || || Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166 Query 166288 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 166345 ||||| || || ||||||| || || ||| | || || ||| || ||||| || Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 54108 Query 166346 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405 |||| ||||||| || ||||| |||| | || | || || | |||| Sbjct 54107 -------TAGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055 Query 166406 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAACA- 166462 ||| ||||||| | | | | | || ||||| |||| ||||| || | |||| | Sbjct 54054 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 53996 Query 166463 ----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 166518 | ||||| ||||||||||| || | || |||||||||||||| ||| |||||| Sbjct 53995 AGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAAC 53936 Query 166519 AACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 166558 ||||| || || || || |||||| | ||||| ||||||| Sbjct 53935 AACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896 >seq10 Length=33665772 Score = 116 bits (128), Expect = 4e-21 Identities = 234/341 (69%), Gaps = 21/341 (6%) Strand=Plus/Plus Query 166228 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 166287 |||| ||||| | ||||| || || || ||||||| |||| | || ||||| || || Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954 Query 166288 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 166345 ||||| || || ||||||| || || ||| | || || ||| || ||||| || Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 4333012 Query 166346 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405 |||| ||||||| || ||||| | |||| | || | || || | |||| Sbjct 4333013 -------TAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065 Query 166406 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAA--- 166460 ||| ||||||| | | | | | || ||||| |||| ||||| || | |||| Sbjct 4333066 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124 Query 166461 --CATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 166518 ||| |||| ||||||||||| || | || |||| || |||||| ||| |||||| Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184 Query 166519 AACTCCCGCTCCTTG-CACTTCTTCCTTGCTGCATGGCCTG 166558 |||| | || |||| || |||||| | ||||| ||||||| Sbjct 4333185 AACT-CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224 >seq4 Length=30051516 Score = 100 bits (110), Expect = 3e-16 Identities = 119/160 (74%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 166593 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 166652 ||| ||||| |||||||| || |||||||| |||||||| ||| | |||| ||||||| Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829 Query 166653 TCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGT----ATGGAAG 166708 |||||| | || || ||| ||| | | || || ||| ||| ||| ||||||| Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887 Query 166709 TTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCT 166748 | || ||||| ||||| || || |||||||| | ||||| Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927 >seq1042 Length=564079 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269 |||||||| ||| | || |||| ||||| | ||||||||| || || ||| ||| |||| Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801 Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329 | || ||||| ||||||||||| || || ||||| || || | ||| | || ||||| Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741 Query 166330 GGG 166332 ||| Sbjct 550740 GGG 550738 >seq1035 Length=594915 Score = 91.5 bits (100), Expect = 2e-13 Identities = 261/398 (66%), Gaps = 30/398 (8%) Strand=Plus/Plus Query 167488 TTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACA 167547 || || || || || || || |||| |||||| ||||| | | | || ||||| Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055 Query 167548 CTGAATCCATTTCATATGATGGGTGT--AGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 167605 |||| || || |||||||||| || || || ||| | || | ||| |||| | | Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TAT--TAGGCGCTGCTCTGCTATGCG 237112 Query 167606 CAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA----GCAAGCAAAC 167661 | || |||||| | ||| | || ||||| | ||||||||| | |||| | | Sbjct 237113 CTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACAT 237168 Query 167662 ACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAAC 167721 ||| || || || | | ||||| | |||||||||||||||||||| || || ||| Sbjct 237169 ACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAAC 237228 Query 167722 CGATTCTGGTCTCAGATC-----TTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATT 167776 || || ||||| || ||| || || ||||||| ||| || || ||| Sbjct 237229 CGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG------- 237281 Query 167777 TCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCAT----CATT 167832 | ||||||| || || |||| | || | |||| | ||||| | | Sbjct 237282 -CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTC 237340 Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTC 167870 ||||||||||| ||||| ||||| || || |||||||| Sbjct 237341 GGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378 >seq1290 Length=351781 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 147164 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 147105 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 147104 GGTTCGAATCCTACTTGGGGAG 147083 >seq480 Length=3896 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 3842 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 3783 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 3782 GGTTCGAATCCTACTTGGGGAG 3761 >seq2320 Length=73522 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 ||| |||||||||||| || ||||| ||| ||||||| || ||||||||||||| ||| Sbjct 47437 TTCTTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 47496 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 47497 CCTACTTGGGGAG 47509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561197073759600