Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Musa_20acuminata_20subsp._20malaccensis_20[refseq_20GCF_5F000313855.
2_202012-11-14] 7,259 sequences; 472,231,289 total letters
Query= NC_020859.1
Length=175430
Score E
Sequences producing significant alignments: (Bits) Value
seq1382 127 2e-24
seq9 125 8e-24
seq1063 116 4e-21
seq10 116 4e-21
seq4 100 3e-16
seq1042 91.5 2e-13
seq1035 91.5 2e-13
seq1290 89.7 6e-13
seq480 89.7 6e-13
seq2320 82.4 9e-11
>seq1382
Length=172696
Score = 127 bits (140), Expect = 2e-24
Identities = 236/342 (69%), Gaps = 17/342 (5%)
Strand=Plus/Plus
Query 166288 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 166345
||||| || || |||||||| || | ||| | || | ||| || ||||| || |||
Sbjct 123497 CACAACATCCTTATGCATCCATTGAACATGTTAGGTCTAGCTCTGGTGTATTCGGCGGCT 123556
Query 166346 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405
| || ||||||||||| || ||||| || ||| | | | || || || ||||
Sbjct 123557 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 123616
Query 166406 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACA----TACAA 166460
||| |||||| || | | ||||||| ||||| |||||||||| || | |||||
Sbjct 123617 AAAACGAATCTGCATTAGCA-GGTTACAGATTCGGTCAAGAAGAAGGAAGAGACTTACAA 123675
Query 166461 CA-----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 166515
| | ||||| ||||||||||| || | || |||||| ||||||| ||| |||
Sbjct 123676 TAGAGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCCTCCAATATGCTAGTTTC 123735
Query 166516 AACAACTCCCGCTCCTT----GCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTG 166571
|||||||| |||| ||| || ||| | || || ||||| ||| | || |||||
Sbjct 123736 AACAACTCTCGCTACTTCTTGACATGGATTCTTGGCAGCTTGGCCAGTTATTGGTATCTG 123795
Query 166572 GTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAA 166613
| |||| || | || | ||| ||||| |||||||| ||
Sbjct 123796 GGTCACAGCTTTAGGTATTAGCACCATGGCTTTCAACCTCAA 123837
>seq9
Length=34148863
Score = 125 bits (138), Expect = 8e-24
Identities = 175/243 (72%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 166096 TACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTT 166155
||||| | || ||||| ||||| || | ||| ||||||||||| ||||| ||||
Sbjct 1506917 TACATTGATCATGAGTATGAACTTAGTTTCTATCTGGGTATGCGTCCTTGGATTGCTGTT 1506976
Query 166156 GCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAA 166215
|| || ||||| || || || ||||| | ||| || ||| | | || ||| | ||||||
Sbjct 1506977 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCTATTGGTCAA 1507036
Query 166216 GGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGT-TGGT 166274
|| ||||||||||||| ||||| | ||||| || | | ||||||| ||||| | ||
Sbjct 1507037 GGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTAGCA-TTTCAACTTCATGTATTGT 1507095
Query 166275 CTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGT 166334
|| | || || ||||| || || ||||||| | || ||| | || || |||| ||
Sbjct 1507096 ATTTCTGGCAGAACACAACATCCTTATGCATCTGGTTCACATGTTAGGTGTAACTGGTGT 1507155
Query 166335 ATT 166337
|||
Sbjct 1507156 ATT 1507158
>seq1063
Length=431445
Score = 116 bits (128), Expect = 4e-21
Identities = 232/340 (68%), Gaps = 19/340 (6%)
Strand=Plus/Minus
Query 166228 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 166287
|||| ||||| | ||||| || || || ||| ||| |||| | || || | || ||
Sbjct 54225 GATGGTATGCCTTTTGGAATATCTGGTACTTTCTACTTCATGATTGTATTACTGGCAGAA 54166
Query 166288 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 166345
||||| || || ||||||| || || ||| | || || ||| || ||||| ||
Sbjct 54165 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 54108
Query 166346 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405
|||| ||||||| || ||||| |||| | || | || || | ||||
Sbjct 54107 -------TAGTACTATGCATGGTTCCTTGGTCCACTCTTGTTTCATCAGGGAAATCACTG 54055
Query 166406 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAACA- 166462
||| ||||||| | | | | | || ||||| |||| ||||| || | |||| |
Sbjct 54054 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 53996
Query 166463 ----TCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 166518
| ||||| ||||||||||| || | || |||||||||||||| ||| ||||||
Sbjct 53995 AGTATTGTAGCTGCTCATGGTTATTTAAGCCGATTGATCTTCCAATATGCTAGTTTCAAC 53936
Query 166519 AACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 166558
||||| || || || || |||||| | ||||| |||||||
Sbjct 53935 AACTCTCGTTCTTTACATTTCTTCTTGGCTGCGTGGCCTG 53896
>seq10
Length=33665772
Score = 116 bits (128), Expect = 4e-21
Identities = 234/341 (69%), Gaps = 21/341 (6%)
Strand=Plus/Plus
Query 166228 GATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAG 166287
|||| ||||| | ||||| || || || ||||||| |||| | || ||||| || ||
Sbjct 4332895 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTCATGATTGTATTCCAGGCAGAA 4332954
Query 166288 CACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT--GGGGTATTTGGTGGCA 166345
||||| || || ||||||| || || ||| | || || ||| || ||||| ||
Sbjct 4332955 CACAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTCTGGTGTATTCGGCCC-- 4333012
Query 166346 GTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405
|||| ||||||| || ||||| | |||| | || | || || | ||||
Sbjct 4333013 -------TAGTACTATGCATGGTTCCTTGGTCAACTCTTGTTTCATCAGGGAAATCACTG 4333065
Query 166406 AAACCGAATCC-CAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACAT-ACAA--- 166460
||| ||||||| | | | | | || ||||| |||| ||||| || | ||||
Sbjct 4333066 AAAACGAATCCGCGTTAGCAAG-TGACTGATTCGGTAAAGAGGAAGAGACTTTACAATAG 4333124
Query 166461 --CATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAAC 166518
||| |||| ||||||||||| || | || |||| || |||||| ||| ||||||
Sbjct 4333125 AGCATTGTAGTTGCTCATGGTTATTTAAGCCGATTGAACTGCCAATATGCTAGTTTCAAC 4333184
Query 166519 AACTCCCGCTCCTTG-CACTTCTTCCTTGCTGCATGGCCTG 166558
|||| | || |||| || |||||| | ||||| |||||||
Sbjct 4333185 AACT-CGACTTCTTGACATTTCTTCTTGGCTGCGTGGCCTG 4333224
>seq4
Length=30051516
Score = 100 bits (110), Expect = 3e-16
Identities = 119/160 (74%), Gaps = 6/160 (4%)
Strand=Plus/Plus
Query 166593 CACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGG 166652
||| ||||| |||||||| || |||||||| |||||||| ||| | |||| |||||||
Sbjct 1282770 CACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGACAGTCAGGG 1282829
Query 166653 TCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGT----ATGGAAG 166708
|||||| | || || ||| ||| | | || || ||| ||| ||| |||||||
Sbjct 1282830 TCGTGTCATTAATAC--GGGTTGATATCATCAATCGTGCTCATCTTGGTATGGATGGAAG 1282887
Query 166709 TTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCT 166748
| || ||||| ||||| || || |||||||| | |||||
Sbjct 1282888 TAATACATGAACGTAATGCTCATAACTTCCCTTTAGACCT 1282927
>seq1042
Length=564079
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 166210 GGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATG 166269
|||||||| ||| | || |||| ||||| | ||||||||| || || ||| ||| ||||
Sbjct 550860 GGTCAAGGAAGTGTTTCAGATGGTATGCCTCACGGAATCTCTGGTACTTTCCACTTCATG 550801
Query 166270 TTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCT 166329
| || ||||| ||||||||||| || || ||||| || || | ||| | || |||||
Sbjct 550800 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTAACATGTTAGGTTTTGCT 550741
Query 166330 GGG 166332
|||
Sbjct 550740 GGG 550738
>seq1035
Length=594915
Score = 91.5 bits (100), Expect = 2e-13
Identities = 261/398 (66%), Gaps = 30/398 (8%)
Strand=Plus/Plus
Query 167488 TTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACA 167547
|| || || || || || || |||| |||||| ||||| | | | || |||||
Sbjct 236996 TTTGGTGTAGCAGCTATATTTCGATGAATCCTCTGATTCCAACGGTGGAATAATTGGACG 237055
Query 167548 CTGAATCCATTTCATATGATGGGTGT--AGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 167605
|||| || || |||||||||| || || || ||| | || | ||| |||| | |
Sbjct 237056 TTGAACCCTTTGAATATGATGGGAGTTTAGGAG-TAT--TAGGCGCTGCTCTGCTATGCG 237112
Query 167606 CAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGA----GCAAGCAAAC 167661
| || |||||| | ||| | || ||||| | ||||||||| | |||| | |
Sbjct 237113 CTATTCATGGTCT----GTATAAAACACTTTATTCGAAGATGGTAACGGTGCAAATACAT 237168
Query 167662 ACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAAC 167721
||| || || || | | ||||| | |||||||||||||||||||| || || |||
Sbjct 237169 ACTGTTCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAAC 237228
Query 167722 CGATTCTGGTCTCAGATC-----TTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATT 167776
|| || ||||| || ||| || || ||||||| ||| || || |||
Sbjct 237229 CGTTTTTGGTCCCAAATCCATCTTTAGGGGTTGCTTTTTCCAATAACCGTTGG------- 237281
Query 167777 TCTTTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCAT----CATT 167832
| ||||||| || || |||| | || | |||| | ||||| | |
Sbjct 237282 -CCTTATGTTTTTTGTATCCGTAACAGGTTTATGGATGAGTGCTATTGGGGTAGTAAGTC 237340
Query 167833 GGTCTGGCTCTTAATCTTCGTGCTTACGATTTCGTTTC 167870
||||||||||| ||||| ||||| || || ||||||||
Sbjct 237341 GGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTC 237378
>seq1290
Length=351781
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| || ||||||||
Sbjct 147164 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 147105
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 147104 GGTTCGAATCCTACTTGGGGAG 147083
>seq480
Length=3896
Score = 89.7 bits (98), Expect = 6e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178
||||| | |||||||||||||||| || ||||| ||| ||||||| || ||||||||
Sbjct 3842 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 3783
Query 18179 GGTTCAAATCCTACCTGGGGAG 18200
||||| |||||||| |||||||
Sbjct 3782 GGTTCGAATCCTACTTGGGGAG 3761
>seq2320
Length=73522
Score = 82.4 bits (90), Expect = 9e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187
||| |||||||||||| || ||||| ||| ||||||| || ||||||||||||| |||
Sbjct 47437 TTCTTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 47496
Query 18188 CCTACCTGGGGAG 18200
||||| |||||||
Sbjct 47497 CCTACTTGGGGAG 47509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561197073759600
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